CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26589	Canola	cytosol	10.1	75.36
CDY16110	Canola	extracellular	55.92	70.24
CDY51169	Canola	cytosol	54.37	66.19
CDX71969	Canola	cytosol	50.87	66.16
CDY26588	Canola	extracellular	40.58	64.51
CDY16031	Canola	cytosol	38.25	63.34
CDY16002	Canola	cytosol	37.28	61.74
CDY26607	Canola	cytosol	54.56	61.49
CDY00489	Canola	mitochondrion	69.9	61.43
CDY26565	Canola	mitochondrion	66.6	60.28
CDY33753	Canola	mitochondrion	51.84	60.14
CDY34870	Canola	mitochondrion	32.82	58.88
CDY33797	Canola	mitochondrion	57.86	58.2
CDY68929	Canola	mitochondrion	65.83	55.85
AT1G12620.1	Thale cress	cytosol, mitochondrion	67.18	55.72
AT1G12300.1	Thale cress	mitochondrion	68.35	55.26
CDY31272	Canola	mitochondrion	60.39	54.75
CDY16003	Canola	cytosol, plastid	41.16	54.22
CDY16032	Canola	mitochondrion	42.72	53.92
CDY16033	Canola	cytosol	15.53	53.33
AT3G22470.1	Thale cress	cytosol, mitochondrion	63.3	52.67
CDY31271	Canola	mitochondrion	49.51	52.47
CDY16026	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	55.53	52.09
CDY26593	Canola	cytosol	61.55	52.05
AT1G12775.1	Thale cress	cytosol, mitochondrion	64.85	51.86
CDY34688	Canola	cytosol	35.92	51.1
CDY34375	Canola	mitochondrion	51.26	51.06
CDY15970	Canola	cytosol	9.13	50.0
CDY25522	Canola	mitochondrion, plastid	38.06	43.85
CDY09968	Canola	cytosol	23.69	41.5
CDY46909	Canola	mitochondrion	23.5	41.44
CDY03257	Canola	cytosol	31.46	41.43
CDY39810	Canola	cytosol	31.46	41.43
CDY06217	Canola	cytosol	22.91	40.27
CDX81633	Canola	extracellular, golgi, plasma membrane	68.74	38.94
CDX67634	Canola	cytosol	30.49	37.12
CDY46394	Canola	mitochondrion	33.2	35.55
CDY34969	Canola	mitochondrion	34.76	35.38
CDX69436	Canola	plastid	34.17	35.34
CDY49646	Canola	mitochondrion	33.98	34.93
CDY48949	Canola	mitochondrion	32.62	34.93
CDX68679	Canola	cytosol	7.77	34.78
VIT_12s0028g02320.t01	Wine grape	mitochondrion	32.04	34.59
CDY25492	Canola	mitochondrion	32.43	34.01
CDY46912	Canola	mitochondrion	32.62	34.01
Solyc06g005220.2.1	Tomato	cytosol	26.8	33.99
CDY25519	Canola	mitochondrion, plastid	42.14	33.96
CDY08386	Canola	cytosol	29.32	33.93
CDY66358	Canola	mitochondrion	25.63	33.85
CDY65983	Canola	mitochondrion	27.57	33.65
VIT_14s0081g00110.t01	Wine grape	cytosol	31.84	33.4
PGSC0003DMT400052977	Potato	cytosol	25.05	33.16
VIT_14s0081g00270.t01	Wine grape	plastid	37.28	33.1
Solyc06g007280.2.1	Tomato	cytosol	16.12	32.55
Solyc06g007810.1.1	Tomato	cytosol	16.89	32.46
PGSC0003DMT400025087	Potato	endoplasmic reticulum	31.07	32.32
CDY47835	Canola	mitochondrion	27.18	32.04
PGSC0003DMT400008759	Potato	cytosol	19.61	31.66
VIT_14s0081g00120.t01	Wine grape	plastid	35.53	31.39
PGSC0003DMT400025067	Potato	cytosol	28.54	30.88
CDY28348	Canola	mitochondrion, plastid	35.73	30.77
KRH70370	Soybean	cytosol	32.23	30.51
KRH42744	Soybean	mitochondrion	35.73	30.11
PGSC0003DMT400008757	Potato	cytosol	28.93	29.92
KRH58843	Soybean	nucleus	35.15	29.62
KRH49698	Soybean	cytosol	32.62	29.47
CDY29251	Canola	mitochondrion	28.54	28.99
VIT_14s0081g00280.t01	Wine grape	mitochondrion	35.73	28.8
CDX68680	Canola	mitochondrion	25.83	28.79
Solyc06g007300.1.1	Tomato	extracellular	33.01	28.72
PGSC0003DMT400025074	Potato	cytosol	30.68	28.62
PGSC0003DMT400052971	Potato	mitochondrion	32.82	28.5
PGSC0003DMT400008760	Potato	mitochondrion	32.43	28.5
KRH75063	Soybean	mitochondrion, plastid	33.2	28.31
CDX89301	Canola	plastid	29.13	28.04
KRH75045	Soybean	mitochondrion	32.23	27.81
KRH75048	Soybean	mitochondrion	32.62	27.63
KRH38755	Soybean	mitochondrion	31.84	27.61
CDY66357	Canola	cytosol	20.19	27.44
Solyc06g007740.1.1	Tomato	cytosol	31.26	27.29
VIT_14s0030g02280.t01	Wine grape	plastid	29.71	27.27
PGSC0003DMT400056665	Potato	mitochondrion	31.07	27.16
VIT_14s0030g02260.t01	Wine grape	cytosol	23.3	27.09
PGSC0003DMT400056663	Potato	plastid	30.87	27.04
CDY31277	Canola	plastid	50.29	27.01
KRH09256	Soybean	mitochondrion	29.13	26.83
PGSC0003DMT400053185	Potato	mitochondrion	30.29	26.44
CDY34370	Canola	cytosol	41.75	26.19
PGSC0003DMT400053556	Potato	mitochondrion	22.91	25.71
PGSC0003DMT400053182	Potato	cytosol	28.74	24.71
PGSC0003DMT400015298	Potato	mitochondrion	28.93	24.43
PGSC0003DMT400015293	Potato	mitochondrion	28.93	24.43
Solyc04g080120.1.1	Tomato	extracellular	28.74	24.18
CDY34680	Canola	cytosol	28.74	16.23
CDY21063	Canola	plastid	3.88	3.64

Protein Annotations

EnsemblPlants:CDY35831	EnsemblPlantsGene:GSBRNA2T00059350001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR44149	PANTHER:PTHR44149:SF3
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	ProteinID:CDY35831
ProteinID:CDY35831.1	TIGRFAMs:TIGR00756	UniParc:UPI0004EEA154	UniProt:A0A078HDL2	MapMan:35.1	:

Description

BnaC09g37630DBnaC09g37630D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HDL2]

Coordinates

chrLK032362:+:171841..173772

Molecular Weight (calculated)

56981.8 Da

IEP (calculated)

5.165

GRAVY (calculated)

0.062

Length

515 amino acids

Sequence
(BLAST)

001: MLMTRIRSAK ALRSVGPLLL ETGTLRTSLL HSSYEFLCFA CERGFSSGVS SNRNLSYRER LRSGIVWLQK LGFAFAVMGK MLKLGYDPDT VTFSTLINGV
101: CHGGKVFEAV ELVERMVQMD VIPNFIVLNT IVNGLCLQGK VSEAMALIDR MVENGCQPDG ATYGPILNIM CKSGNIALAL DLLRKMEHRK VKPQVVTYSM
201: IIDSLCKDGS LDDALGLFNE METKGIKANV ITYNSLIGGF CSAGRWNDGA ELLRDMITRE ITPNVVTFSA LIDSFLKERK LTEPQELFNE MITRDEANKM
301: LDLMVSKGCD PNILTFIILI NGYCKAGWVE DGMRLFRKMP LRGVVANTVT YSTLIQGFCQ SGKLDVAKEV FQDMVSQGAN PDTVTYKILL DGLCDNGELE
401: EALEVDDAWD LFCSLPLKGV KPNVKTFTVM IRKKGSLPEA NMLLRKMEED GIAPNDCTYN TIIRAHLLGG DIATSAKLIE EMKSCGFSSD ASTVEMVMDM
501: LSDGRLDKSF LDMLS

Best Arabidopsis Sequence Match ( AT1G12300.1 )
(BLAST)

001: MVKLMIRRLS SQVSKFVQPR LLETGTLRIA LINCPNELSF CCERGFSAFS DRNLSYRERL RSGLVDIKAD DAIDLFRDMI HSRPLPTVID FSRLFSAIAK
101: TKQYDLVLAL CKQMELKGIA HNLYTLSIMI NCFCRCRKLC LAFSAMGKII KLGYEPNTIT FSTLINGLCL EGRVSEALEL VDRMVEMGHK PDLITINTLV
201: NGLCLSGKEA EAMLLIDKMV EYGCQPNAVT YGPVLNVMCK SGQTALAMEL LRKMEERNIK LDAVKYSIII DGLCKHGSLD NAFNLFNEME MKGITTNIIT
301: YNILIGGFCN AGRWDDGAKL LRDMIKRKIN PNVVTFSVLI DSFVKEGKLR EAEELHKEMI HRGIAPDTIT YTSLIDGFCK ENHLDKANQM VDLMVSKGCD
401: PNIRTFNILI NGYCKANRID DGLELFRKMS LRGVVADTVT YNTLIQGFCE LGKLNVAKEL FQEMVSRKVP PNIVTYKILL DGLCDNGESE KALEIFEKIE
501: KSKMELDIGI YNIIIHGMCN ASKVDDAWDL FCSLPLKGVK PGVKTYNIMI GGLCKKGPLS EAELLFRKME EDGHAPDGWT YNILIRAHLG DGDATKSVKL
601: IEELKRCGFS VDASTIKMVI DMLSDGRLKK SFLDMLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g12300, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q0WKV3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.