CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49646	Canola	mitochondrion	93.98	93.41
Bra006187.1-P	Field mustard	plastid	50.2	85.91
AT5G16640.1	Thale cress	mitochondrion	74.1	73.21
CDY39810	Canola	cytosol	43.17	54.99
CDY09968	Canola	cytosol	32.33	54.76
CDY03257	Canola	cytosol	42.97	54.73
CDY06217	Canola	cytosol	32.13	54.61
CDX67634	Canola	cytosol	46.18	54.37
CDY08386	Canola	cytosol	48.19	53.93
CDY46909	Canola	mitochondrion	30.52	52.05
CDY65983	Canola	mitochondrion	43.78	51.66
CDY34969	Canola	mitochondrion	51.81	50.99
CDY46394	Canola	mitochondrion	49.2	50.94
CDY48949	Canola	mitochondrion	49.0	50.73
CDY25492	Canola	mitochondrion	49.6	50.31
CDY66358	Canola	mitochondrion	39.36	50.26
CDY46912	Canola	mitochondrion	49.6	50.0
CDY47835	Canola	mitochondrion	42.57	48.51
CDY28348	Canola	mitochondrion, plastid	53.61	44.65
CDY31271	Canola	mitochondrion	40.36	41.36
CDY16031	Canola	cytosol	25.7	41.16
CDY29251	Canola	mitochondrion	41.16	40.43
CDY34375	Canola	mitochondrion	41.37	39.85
CDY33797	Canola	mitochondrion	40.96	39.84
CDY31272	Canola	mitochondrion	45.38	39.79
CDY51169	Canola	cytosol	33.73	39.72
CDY16002	Canola	cytosol	24.7	39.55
CDY68929	Canola	mitochondrion	47.39	38.88
CDY26588	Canola	extracellular	25.1	38.58
CDX89301	Canola	plastid	41.37	38.5
CDY26593	Canola	cytosol	46.59	38.1
VIT_12s0028g02320.t01	Wine grape	mitochondrion	36.35	37.95
CDY16110	Canola	extracellular	31.12	37.8
CDY16026	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	41.57	37.7
CDY33753	Canola	mitochondrion	33.53	37.61
CDY00489	Canola	mitochondrion	43.98	37.37
CDY16032	Canola	mitochondrion	29.92	36.52
CDY34688	Canola	cytosol	26.51	36.46
CDY26565	Canola	mitochondrion	41.16	36.03
CDY25522	Canola	mitochondrion, plastid	32.33	36.02
CDY26607	Canola	cytosol	32.93	35.89
CDX71969	Canola	cytosol	27.51	34.6
Solyc06g007280.2.1	Tomato	cytosol	17.67	34.51
CDY35831	Canola	mitochondrion	35.34	34.17
CDY66357	Canola	cytosol	25.7	33.77
VIT_14s0081g00270.t01	Wine grape	plastid	38.76	33.28
CDY25519	Canola	mitochondrion, plastid	42.57	33.18
CDY34870	Canola	mitochondrion	19.08	33.1
VIT_14s0030g02280.t01	Wine grape	plastid	36.95	32.8
VIT_14s0081g00120.t01	Wine grape	plastid	37.75	32.25
PGSC0003DMT400008759	Potato	cytosol	20.48	31.97
PGSC0003DMT400052977	Potato	cytosol	24.9	31.88
VIT_14s0081g00110.t01	Wine grape	cytosol	31.33	31.77
KRH70370	Soybean	cytosol	34.14	31.25
KRH09256	Soybean	mitochondrion	34.94	31.13
PGSC0003DMT400008757	Potato	cytosol	30.72	30.72
KRH38755	Soybean	mitochondrion	36.55	30.64
VIT_14s0081g00280.t01	Wine grape	mitochondrion	39.16	30.52
Solyc06g005220.2.1	Tomato	cytosol	24.7	30.3
KRH49698	Soybean	cytosol	34.34	30.0
CDY16003	Canola	cytosol, plastid	23.49	29.92
KRH58843	Soybean	nucleus	36.55	29.79
KRH42744	Soybean	mitochondrion	36.35	29.62
Solyc06g007300.1.1	Tomato	extracellular	35.14	29.56
PGSC0003DMT400025087	Potato	endoplasmic reticulum	28.92	29.09
PGSC0003DMT400008760	Potato	mitochondrion	34.14	29.01
PGSC0003DMT400052971	Potato	mitochondrion	34.14	28.67
Solyc06g007740.1.1	Tomato	cytosol	33.94	28.64
KRH75045	Soybean	mitochondrion	34.34	28.64
KRH75063	Soybean	mitochondrion, plastid	34.74	28.64
PGSC0003DMT400025074	Potato	cytosol	31.53	28.44
PGSC0003DMT400056663	Potato	plastid	33.53	28.4
PGSC0003DMT400056665	Potato	mitochondrion	33.53	28.35
CDY16033	Canola	cytosol	8.43	28.0
Solyc06g007810.1.1	Tomato	cytosol	15.06	27.99
PGSC0003DMT400053185	Potato	mitochondrion	32.93	27.8
KRH75048	Soybean	mitochondrion	33.53	27.47
PGSC0003DMT400053556	Potato	mitochondrion	25.3	27.45
PGSC0003DMT400025067	Potato	cytosol	26.1	27.31
CDX68679	Canola	cytosol	6.22	26.96
CDX68680	Canola	mitochondrion	24.9	26.84
PGSC0003DMT400053182	Potato	cytosol	31.73	26.38
CDY34370	Canola	cytosol	42.57	25.82
VIT_14s0030g02260.t01	Wine grape	cytosol	22.49	25.28
PGSC0003DMT400015298	Potato	mitochondrion	30.72	25.08
PGSC0003DMT400015293	Potato	mitochondrion	30.72	25.08
Solyc04g080120.1.1	Tomato	extracellular	30.12	24.51
CDX81633	Canola	extracellular, golgi, plasma membrane	43.37	23.76
CDY31277	Canola	plastid	36.14	18.77
CDY34680	Canola	cytosol	33.73	18.42
CDY26589	Canola	cytosol	1.2	8.7
CDY15970	Canola	cytosol	1.2	6.38
CDY21063	Canola	plastid	3.01	2.73

Protein Annotations

EnsemblPlants:CDX69436	EnsemblPlantsGene:GSBRNA2T00135405001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR44149	PANTHER:PTHR44149:SF1
PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	ProteinID:CDX69436	ProteinID:CDX69436.1	SEG:seg
SUPFAM:SSF81901	TIGRFAMs:TIGR00756	UniParc:UPI0004EDFA31	MapMan:35.1	:	:

Description

BnaA10g17850D

Coordinates

chrLK031790:-:208235..209868

Molecular Weight (calculated)

56132.1 Da

IEP (calculated)

8.466

GRAVY (calculated)

0.018

Length

498 amino acids

Sequence
(BLAST)

001: MRRSISSKAK SFLHRNLPEK ANPPSHPLLN SRRAYTSSSN NNTDYKETLR NKLRHMNLDD SLELFFHMIQ SHPLPSIADF SRLLTAISKL NRHDVVIHLY
101: EQMEILGVPH NLYTYNILVN CLCRCSKLSQ ALSFLAKMIK LGHTPSVVTF GSLLGGLCRG GRVSEALRLF GKMVEIGVRP NVVIYNIVID GLCKSRHVDK
201: ALDFFNQMEV VRPDVVTYNS LISGLCNASR WGEALKMVRC MSESGLSPDV FTFNALIDAC VKRGSLLEAE ELYEEMVRRS LEPDVVTYSL LIDGLCVCSR
301: LDEAERMFEY MVSKRCFPDV VTYSILINGF CKSRKVDYGM KLFCEMSRRG VVRNVVTYTI LIQGYCLAGK VNVAEEIFKR MVGSGVSPNI VTYNVLLHGL
401: CDNGKVEKAL MMLEGMEKSG MEGDIVTYNI IIRGMCKAGE VAEAWGLYCS LNLKGLVPDI WTYTTMMLGL YKKGLRREAD ALFRKMKEDG ILPNECCV

Best Arabidopsis Sequence Match ( AT5G16640.1 )
(BLAST)

001: MRRSISSKAK SFLHRNLLYS GNSGTSPSSS FSICGFCFSR RAYSNGSDYR EMLRNGIRFM KLDDSLDLFF HMVQCRPLPS IADFSRLLSA ISKMKKYDVV
101: IYLWEQMQML GIPHNLCTCN ILLNCFCRCS QLSLALSFLG KMIKLGHEPS IVTFGSLLNG FCRGDRVYDA LYMFDQMVGM GYKPNVVIYN TIIDGLCKSK
201: QVDNALDLLN RMEKDGIGPD VVTYNSLISG LCSSGRWSDA TRMVSCMTKR EIYPDVFTFN ALIDACVKEG RVSEAEEFYE EMIRRSLDPD IVTYSLLIYG
301: LCMYSRLDEA EEMFGFMVSK GCFPDVVTYS ILINGYCKSK KVEHGMKLFC EMSQRGVVRN TVTYTILIQG YCRAGKLNVA EEIFRRMVFC GVHPNIITYN
401: VLLHGLCDNG KIEKALVILA DMQKNGMDAD IVTYNIIIRG MCKAGEVADA WDIYCSLNCQ GLMPDIWTYT TMMLGLYKKG LRREADALFR KMKEDGILPN
501: ECYV

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g16640, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FMD3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.