CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, mitochondrion, cytosol, plasma membrane, golgi

Predictor Summary:

cytosol 2
plastid 1
mitochondrion 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, secretory
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26588	Canola	extracellular	47.91	81.17
CDY16031	Canola	cytosol	43.9	77.49
CDY16002	Canola	cytosol	41.89	73.95
Bra026958.1-P	Field mustard	mitochondrion	83.61	72.06
CDY16110	Canola	extracellular	47.91	64.15
CDY16032	Canola	mitochondrion	45.54	61.27
CDY26607	Canola	cytosol	50.27	60.39
CDY51169	Canola	cytosol	46.45	60.28
CDY16003	Canola	cytosol, plastid	42.81	60.1
CDY26593	Canola	cytosol	65.94	59.44
CDY33753	Canola	mitochondrion	47.72	59.01
CDY26565	Canola	mitochondrion	60.66	58.52
CDY31271	Canola	mitochondrion	51.55	58.23
CDY34870	Canola	mitochondrion	30.24	57.84
CDX71969	Canola	cytosol	41.71	57.83
CDY00489	Canola	mitochondrion	60.84	57.0
CDY68929	Canola	mitochondrion	62.3	56.34
AT1G12300.1	Thale cress	mitochondrion	64.85	55.89
AT1G12620.1	Thale cress	cytosol, mitochondrion	63.02	55.72
CDY35831	Canola	mitochondrion	52.09	55.53
CDY33797	Canola	mitochondrion	51.73	55.47
CDY31272	Canola	mitochondrion	55.74	53.87
AT3G22470.1	Thale cress	cytosol, mitochondrion	59.56	52.83
AT1G12775.1	Thale cress	cytosol, mitochondrion	61.75	52.64
CDY46909	Canola	mitochondrion	26.05	48.97
CDY06217	Canola	cytosol	25.68	48.12
CDY09968	Canola	cytosol	25.68	47.96
CDY03257	Canola	cytosol	34.06	47.83
CDY39810	Canola	cytosol	33.88	47.57
CDX67634	Canola	cytosol	35.7	46.34
VIT_12s0028g02320.t01	Wine grape	mitochondrion	37.52	43.19
CDY66358	Canola	mitochondrion	30.6	43.08
CDY08386	Canola	cytosol	34.79	42.92
CDX69436	Canola	plastid	37.7	41.57
CDY34375	Canola	mitochondrion	38.98	41.39
CDY46912	Canola	mitochondrion	37.16	41.3
CDY46394	Canola	mitochondrion	36.07	41.16
CDY34688	Canola	cytosol	27.14	41.16
CDY49646	Canola	mitochondrion	37.16	40.72
CDY48949	Canola	mitochondrion	35.52	40.54
CDY34969	Canola	mitochondrion	36.61	39.72
CDY25492	Canola	mitochondrion	35.52	39.71
CDY65983	Canola	mitochondrion	29.51	38.39
Solyc06g007280.2.1	Tomato	cytosol	17.49	37.65
CDY25519	Canola	mitochondrion, plastid	43.72	37.56
CDX81633	Canola	extracellular, golgi, plasma membrane	62.11	37.51
CDY25522	Canola	mitochondrion, plastid	29.87	36.69
CDY47835	Canola	mitochondrion	28.96	36.38
Solyc06g005220.2.1	Tomato	cytosol	26.41	35.71
VIT_14s0081g00270.t01	Wine grape	plastid	37.7	35.69
CDY29251	Canola	mitochondrion	32.24	34.91
VIT_14s0030g02280.t01	Wine grape	plastid	35.34	34.58
PGSC0003DMT400008757	Potato	cytosol	31.33	34.54
VIT_14s0081g00110.t01	Wine grape	cytosol	30.78	34.42
CDY28348	Canola	mitochondrion, plastid	37.16	34.11
PGSC0003DMT400053556	Potato	mitochondrion	28.23	33.77
CDX68680	Canola	mitochondrion	28.23	33.55
VIT_14s0081g00120.t01	Wine grape	plastid	35.52	33.45
KRH70370	Soybean	cytosol	32.79	33.09
CDX89301	Canola	plastid	32.06	32.9
PGSC0003DMT400025074	Potato	cytosol	32.97	32.79
CDY66357	Canola	cytosol	22.59	32.72
KRH49698	Soybean	cytosol	33.88	32.63
KRH42744	Soybean	mitochondrion	34.97	31.42
KRH75048	Soybean	mitochondrion	34.79	31.41
KRH75045	Soybean	mitochondrion	34.06	31.32
PGSC0003DMT400056665	Potato	mitochondrion	33.52	31.24
PGSC0003DMT400008760	Potato	mitochondrion	33.33	31.23
PGSC0003DMT400025087	Potato	endoplasmic reticulum	28.05	31.11
Solyc06g007300.1.1	Tomato	extracellular	33.52	31.08
Solyc06g007740.1.1	Tomato	cytosol	33.33	31.02
KRH58843	Soybean	nucleus	34.43	30.93
VIT_14s0081g00280.t01	Wine grape	mitochondrion	35.7	30.67
KRH75063	Soybean	mitochondrion, plastid	33.7	30.63
PGSC0003DMT400052977	Potato	cytosol	21.49	30.33
KRH38755	Soybean	mitochondrion	32.79	30.3
PGSC0003DMT400053185	Potato	mitochondrion	32.24	30.0
KRH09256	Soybean	mitochondrion	30.42	29.87
PGSC0003DMT400052971	Potato	mitochondrion	32.24	29.85
PGSC0003DMT400025067	Potato	cytosol	25.87	29.83
PGSC0003DMT400008759	Potato	cytosol	17.3	29.78
PGSC0003DMT400056663	Potato	plastid	31.51	29.42
PGSC0003DMT400053182	Potato	cytosol	31.33	28.71
CDY34370	Canola	cytosol	42.44	28.38
PGSC0003DMT400015298	Potato	mitochondrion	30.97	27.87
PGSC0003DMT400015293	Potato	mitochondrion	30.97	27.87
Solyc06g007810.1.1	Tomato	cytosol	13.48	27.61
Solyc04g080120.1.1	Tomato	extracellular	30.6	27.45
CDY31277	Canola	plastid	45.54	26.07
CDY16033	Canola	cytosol	7.1	26.0
VIT_14s0030g02260.t01	Wine grape	cytosol	19.85	24.61
CDX68679	Canola	cytosol	4.19	20.0
CDY34680	Canola	cytosol	27.69	16.67
CDY15970	Canola	cytosol	0.55	3.19
CDY26589	Canola	cytosol	0.36	2.9
CDY21063	Canola	plastid	1.09	1.09

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A078FSH2	EnsemblPlants:CDY16026	ProteinID:CDY16026	ProteinID:CDY16026.1
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00090415001	InterPro:IPR002885
InterPro:IPR011990	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1649
InterPro:Pentatricopeptide_repeat	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0004EDCF8F	SEG:seg

Description

BnaC08g40970DBnaC08g40970D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FSH2]

Coordinates

chrLK032060:-:231272..233196

Molecular Weight (calculated)

55150.8 Da

IEP (calculated)

6.186

GRAVY (calculated)

0.070

Length

549 amino acids

Sequence
(BLAST)

001: MVRSRPLPTV IDFNRLFGLV AKTKQYDLVL ALCKQMELQG IAYDLYTLNI MINCFCRRRK LGFAFSAMGK ILKLGYEPST ITFSTLINGL SLVGKVSEAV
101: ELVDRMVGMK VIPNLIILNT IVNGLCLQDR LSEAMALIDR MMANGCQPDG FTYGPVLNRM CKSGNTSSAL DLLRKMEGRK IELDAAKYNV IIDSLCKDGS
201: LDDPLILFNE METKGVKANV ITYNSLIGGF CSAGRWDDGA QLLRDMIRRG ITPNVVTFNA LIDSFVKEGK LSEAEELYNE MIPRGIDPNT ITYSTLIYGL
301: CYEKRLDEAN QMLDLMVSKG CDPDIWTYNI LINGYCKAKL VDEGMRLFRK MSLRGVVADT VTYSSLIQGF CQSGKLKVAK ELFQEMVSEG AHPDIVTYGI
401: LLDGLCDNGE VEEALEILEK MHKTKTELDI GIYSIIIHGM CNASKVDEAW DLFCSLPSKG VKPDVKTYXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
501: XXXXXXXXXX XXXXXXXXXX XXXXXFFLKF HQKFLYIYIY IYISGDKGL

Best Arabidopsis Sequence Match ( AT1G12300.1 )
(BLAST)

001: MVKLMIRRLS SQVSKFVQPR LLETGTLRIA LINCPNELSF CCERGFSAFS DRNLSYRERL RSGLVDIKAD DAIDLFRDMI HSRPLPTVID FSRLFSAIAK
101: TKQYDLVLAL CKQMELKGIA HNLYTLSIMI NCFCRCRKLC LAFSAMGKII KLGYEPNTIT FSTLINGLCL EGRVSEALEL VDRMVEMGHK PDLITINTLV
201: NGLCLSGKEA EAMLLIDKMV EYGCQPNAVT YGPVLNVMCK SGQTALAMEL LRKMEERNIK LDAVKYSIII DGLCKHGSLD NAFNLFNEME MKGITTNIIT
301: YNILIGGFCN AGRWDDGAKL LRDMIKRKIN PNVVTFSVLI DSFVKEGKLR EAEELHKEMI HRGIAPDTIT YTSLIDGFCK ENHLDKANQM VDLMVSKGCD
401: PNIRTFNILI NGYCKANRID DGLELFRKMS LRGVVADTVT YNTLIQGFCE LGKLNVAKEL FQEMVSRKVP PNIVTYKILL DGLCDNGESE KALEIFEKIE
501: KSKMELDIGI YNIIIHGMCN ASKVDDAWDL FCSLPLKGVK PGVKTYNIMI GGLCKKGPLS EAELLFRKME EDGHAPDGWT YNILIRAHLG DGDATKSVKL
601: IEELKRCGFS VDASTIKMVI DMLSDGRLKK SFLDMLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g12300, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q0WKV3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.