CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89301	Canola	plastid	97.44	92.34
AT4G26800.2	Thale cress	mitochondrion, plastid	58.97	58.17
CDY46909	Canola	mitochondrion	26.82	46.58
CDX67634	Canola	cytosol	38.86	46.57
CDY03257	Canola	cytosol	34.91	45.27
CDY39810	Canola	cytosol	34.91	45.27
CDY46394	Canola	mitochondrion	42.01	44.28
CDY66358	Canola	mitochondrion	33.53	43.59
CDY48949	Canola	mitochondrion	41.03	43.24
CDY06217	Canola	cytosol	24.26	41.98
CDY65983	Canola	mitochondrion	34.91	41.94
CDY46912	Canola	mitochondrion	40.83	41.9
CDY09968	Canola	cytosol	24.26	41.84
CDY08386	Canola	cytosol	36.29	41.35
CDY25492	Canola	mitochondrion	40.04	41.34
CDX69436	Canola	plastid	40.43	41.16
CDY49646	Canola	mitochondrion	40.63	41.12
CDY34969	Canola	mitochondrion	39.84	39.92
CDY47835	Canola	mitochondrion	32.35	37.53
CDY16031	Canola	cytosol	22.49	36.66
CDY16002	Canola	cytosol	21.89	35.69
CDY33797	Canola	mitochondrion	35.31	34.96
CDY31271	Canola	mitochondrion	33.33	34.77
CDY28348	Canola	mitochondrion, plastid	40.83	34.62
CDY34375	Canola	mitochondrion	34.71	34.04
CDY16032	Canola	mitochondrion	27.22	33.82
CDY16110	Canola	extracellular	27.22	33.66
CDY26588	Canola	extracellular	21.5	33.64
CDY51169	Canola	cytosol	28.01	33.57
CDY34870	Canola	mitochondrion	18.93	33.45
CDY68929	Canola	mitochondrion	40.04	33.44
VIT_12s0028g02320.t01	Wine grape	mitochondrion	31.16	33.12
CDY31272	Canola	mitochondrion	37.08	33.1
CDY26593	Canola	cytosol	39.05	32.51
CDY16026	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	34.91	32.24
CDY26565	Canola	mitochondrion	36.09	32.16
CDY00489	Canola	mitochondrion	37.08	32.08
CDY34688	Canola	cytosol	21.7	30.39
CDX71969	Canola	cytosol	23.67	30.3
KRH70370	Soybean	cytosol	32.15	29.96
CDY66357	Canola	cytosol	22.29	29.82
VIT_14s0081g00270.t01	Wine grape	plastid	33.33	29.14
CDY26607	Canola	cytosol	26.23	29.1
CDY25522	Canola	mitochondrion, plastid	25.64	29.08
CDY25519	Canola	mitochondrion, plastid	36.49	28.95
KRH49698	Soybean	cytosol	32.54	28.95
CDY35831	Canola	mitochondrion	28.99	28.54
KRH09256	Soybean	mitochondrion	31.36	28.44
CDY33753	Canola	mitochondrion	24.85	28.38
KRH75045	Soybean	mitochondrion	33.33	28.31
VIT_14s0081g00120.t01	Wine grape	plastid	32.15	27.96
PGSC0003DMT400008759	Potato	cytosol	17.55	27.9
Solyc06g005220.2.1	Tomato	cytosol	22.29	27.83
KRH75063	Soybean	mitochondrion, plastid	32.94	27.65
KRH75048	Soybean	mitochondrion	33.14	27.63
KRH42744	Soybean	mitochondrion	33.14	27.5
KRH58843	Soybean	nucleus	33.14	27.5
VIT_14s0030g02280.t01	Wine grape	plastid	29.98	27.09
PGSC0003DMT400052977	Potato	cytosol	20.71	26.99
PGSC0003DMT400008757	Potato	cytosol	26.23	26.71
KRH38755	Soybean	mitochondrion	31.16	26.6
VIT_14s0081g00110.t01	Wine grape	cytosol	25.64	26.48
CDY16003	Canola	cytosol, plastid	20.32	26.34
Solyc06g007810.1.1	Tomato	cytosol	13.81	26.12
Solyc06g007280.2.1	Tomato	cytosol	13.02	25.88
PGSC0003DMT400008760	Potato	mitochondrion	29.39	25.43
PGSC0003DMT400053556	Potato	mitochondrion	22.88	25.27
VIT_14s0081g00280.t01	Wine grape	mitochondrion	31.56	25.04
PGSC0003DMT400025067	Potato	cytosol	23.47	25.0
PGSC0003DMT400025087	Potato	endoplasmic reticulum	24.26	24.85
PGSC0003DMT400025074	Potato	cytosol	27.02	24.82
PGSC0003DMT400056665	Potato	mitochondrion	28.6	24.62
Solyc06g007300.1.1	Tomato	extracellular	28.6	24.49
Solyc06g007740.1.1	Tomato	cytosol	28.21	24.24
PGSC0003DMT400052971	Potato	mitochondrion	28.21	24.11
CDX68680	Canola	mitochondrion	21.89	24.03
PGSC0003DMT400056663	Potato	plastid	27.61	23.81
CDX68679	Canola	cytosol	5.33	23.48
CDY16033	Canola	cytosol	6.9	23.33
CDY34370	Canola	cytosol	37.08	22.9
Solyc04g080120.1.1	Tomato	extracellular	27.22	22.55
VIT_14s0030g02260.t01	Wine grape	cytosol	19.53	22.35
PGSC0003DMT400015298	Potato	mitochondrion	26.82	22.3
PGSC0003DMT400015293	Potato	mitochondrion	26.82	22.3
PGSC0003DMT400053185	Potato	mitochondrion	25.25	21.69
PGSC0003DMT400053182	Potato	cytosol	25.25	21.37
CDX81633	Canola	extracellular, golgi, plasma membrane	37.87	21.12
CDY34680	Canola	cytosol	28.6	15.9
CDY31277	Canola	plastid	29.39	15.54
CDY26589	Canola	cytosol	1.18	8.7
CDY15970	Canola	cytosol	0.99	5.32
CDY21063	Canola	plastid	2.96	2.73

Protein Annotations

EnsemblPlants:CDY29251	EnsemblPlantsGene:GSBRNA2T00042185001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR44149	PANTHER:PTHR44149:SF3
PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	ProteinID:CDY29251	ProteinID:CDY29251.1	SUPFAM:SSF48452
TIGRFAMs:TIGR00756	UniParc:UPI0004EE0AE5	UniProt:A0A078GUM5	MapMan:35.1	:	:

Description

BnaC01g19030DBnaC01g19030D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GUM5]

Coordinates

chrLK032234:+:19048..21161

Molecular Weight (calculated)

57062.7 Da

IEP (calculated)

8.966

GRAVY (calculated)

-0.020

Length

507 amino acids

Sequence
(BLAST)

001: MRWPIPTAIS STAKALLHRY FPKNGIIAPS FRLCKFRAFS SAVDYREILR TGLRGIKHDE AVDLFGYMAE SRPLPNIIEF NKVLTAIAKM KSYETVIRLW
101: SIVEDDEGIE ISPDIYTCNI LVKCFIRCCH PCVAMSFLGK MLKLGVEPDV VTSSLLVNGF CQINRFDEAF YVAEQMKKMG VTLNVVVYTI LIDGLCRNRF
201: LNEAINVFGL MENEGVTPNV FTYTSLISGL CNACKLSEAS HVLRQMISRK IDPNVVTFTT LINAYVKAGK FSEFWELYQE MIKLSIDPNV VTYTSVINGL
301: CMHNHVDRAK KAFEDMLRNG CAPNVLTYST LANGLFKSNR FNEGIELLKE MSDSGVAENT VSRNTLIQGC IQAGKISSAQ ELFERMPSDG LPPNIRSYNI
401: VLAGLFVYGK VKKALSTYEL MQKTRNDLDI VTYTIMIHWM CKDGKADEAF KLFFSLSSKG VEPDDKAYTA MISGLKKNGM LARAHALTRA YQKYKRNRGS
501: FQSAKGY

Best Arabidopsis Sequence Match ( AT4G26800.2 )
(BLAST)

001: MRWSIATAIA STAKGFLHLH HHFLKNSNPG IVLSPSLRFR FWVRAFSGTT IDYREVLRSG LHNIKFDDAF HLFVLMAYSY PLPSIVEFNK VLTAIAKMQM
101: YDVVINLWKR IENAEGIEIS PDLYTCNILV NCFCRCFQPS SALSYLGKMM KLGIEPDIVT ASSLVNGFCL SNSIKDAVYV AGQMEKMGIK RDVVVDTILI
201: DTLCKNRLVV PALEVLKRMK DRGISPNVVT YSSLITGLCK SGRLADAERR LHEMDSKKIN PNVITFSALI DAYAKRGKLS KVDSVYKMMI QMSIDPNVFT
301: YSSLIYGLCM HNRVDEAIKM LDLMISKGCT PNVVTYSTLA NGFFKSSRVD DGIKLLDDMP QRGVAANTVS CNTLIKGYFQ AGKIDLALGV FGYMTSNGLI
401: PNIRSYNIVL AGLFANGEVE KALSRFEHMQ KTRNDLDIIT YTIMIHGMCK ACMVKEAYDL FYKLKFKRVE PDFKAYTIMI AELNRAGMRT EADALNRFYQ
501: KHVRQNESAP AEVS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g26800 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZ20]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.