CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra026882.1-P	Field mustard	cytosol	87.7	84.08
CDY26589	Canola	cytosol	9.77	72.46
CDY16110	Canola	extracellular	51.95	64.88
CDY26565	Canola	mitochondrion	72.07	64.85
CDY00489	Canola	mitochondrion	74.22	64.85
CDY33753	Canola	mitochondrion	55.66	64.19
CDY51169	Canola	cytosol	49.61	60.05
CDY31271	Canola	mitochondrion	56.64	59.67
CDY16033	Canola	cytosol	17.19	58.67
CDY31272	Canola	mitochondrion	64.45	58.1
CDY16032	Canola	mitochondrion	46.29	58.09
CDY35831	Canola	mitochondrion	58.2	57.86
CDX71969	Canola	cytosol	43.16	55.81
CDY16003	Canola	cytosol, plastid	42.58	55.75
CDY34870	Canola	mitochondrion	31.25	55.75
CDY68929	Canola	mitochondrion	66.02	55.68
CDY26593	Canola	cytosol	65.82	55.34
CDY15970	Canola	cytosol	10.16	55.32
AT1G12620.1	Thale cress	cytosol, mitochondrion	66.99	55.23
AT1G12300.1	Thale cress	mitochondrion	68.55	55.1
CDY26607	Canola	cytosol	49.02	54.92
CDY16031	Canola	cytosol	33.2	54.66
AT3G22470.1	Thale cress	cytosol, mitochondrion	65.43	54.12
CDY16026	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	55.47	51.73
AT1G12775.1	Thale cress	cytosol, mitochondrion	64.06	50.93
CDY26588	Canola	extracellular	30.86	48.77
CDY16002	Canola	cytosol	29.49	48.55
CDX67634	Canola	cytosol	36.91	44.68
CDY09968	Canola	cytosol	25.2	43.88
CDY39810	Canola	cytosol	33.2	43.48
CDY03257	Canola	cytosol	33.2	43.48
CDY06217	Canola	cytosol	24.61	43.0
CDX81633	Canola	extracellular, golgi, plasma membrane	75.2	42.35
CDY34375	Canola	mitochondrion	42.38	41.97
CDY48949	Canola	mitochondrion	38.87	41.37
CDY46394	Canola	mitochondrion	38.87	41.37
CDY08386	Canola	cytosol	35.74	41.12
CDX69436	Canola	plastid	39.84	40.96
CDY47835	Canola	mitochondrion	34.96	40.96
CDY46909	Canola	mitochondrion	23.24	40.75
CDY65983	Canola	mitochondrion	33.4	40.52
CDY49646	Canola	mitochondrion	39.65	40.52
CDY34688	Canola	cytosol	28.52	40.33
CDY25492	Canola	mitochondrion	37.89	39.51
VIT_12s0028g02320.t01	Wine grape	mitochondrion	36.33	38.99
CDY66358	Canola	mitochondrion	29.69	38.97
CDY46912	Canola	mitochondrion	37.3	38.66
CDY34969	Canola	mitochondrion	38.09	38.54
VIT_14s0081g00270.t01	Wine grape	plastid	41.21	36.38
CDX68679	Canola	cytosol	8.01	35.65
CDY29251	Canola	mitochondrion	34.96	35.31
CDY25522	Canola	mitochondrion, plastid	30.66	35.12
KRH70370	Soybean	cytosol	36.91	34.74
PGSC0003DMT400008759	Potato	cytosol	21.48	34.48
CDY25519	Canola	mitochondrion, plastid	42.97	34.43
VIT_14s0081g00120.t01	Wine grape	plastid	39.06	34.31
VIT_14s0081g00110.t01	Wine grape	cytosol	32.81	34.22
CDY28348	Canola	mitochondrion, plastid	39.84	34.11
CDX89301	Canola	plastid	35.35	33.83
KRH49698	Soybean	cytosol	37.5	33.68
Solyc06g007280.2.1	Tomato	cytosol	16.6	33.33
PGSC0003DMT400008757	Potato	cytosol	32.23	33.13
KRH75063	Soybean	mitochondrion, plastid	38.67	32.78
KRH42744	Soybean	mitochondrion	38.87	32.57
Solyc06g007810.1.1	Tomato	cytosol	16.99	32.46
PGSC0003DMT400025074	Potato	cytosol	34.96	32.43
KRH58843	Soybean	nucleus	38.67	32.41
PGSC0003DMT400052977	Potato	cytosol	24.61	32.39
KRH75045	Soybean	mitochondrion	37.5	32.16
PGSC0003DMT400008760	Potato	mitochondrion	36.72	32.08
KRH75048	Soybean	mitochondrion	37.89	31.91
VIT_14s0081g00280.t01	Wine grape	mitochondrion	39.65	31.77
Solyc06g007300.1.1	Tomato	extracellular	36.52	31.59
PGSC0003DMT400025087	Potato	endoplasmic reticulum	30.47	31.52
PGSC0003DMT400056665	Potato	mitochondrion	36.13	31.41
PGSC0003DMT400052971	Potato	mitochondrion	36.13	31.2
KRH09256	Soybean	mitochondrion	33.98	31.13
PGSC0003DMT400056663	Potato	plastid	35.74	31.12
Solyc06g007740.1.1	Tomato	cytosol	35.74	31.02
VIT_14s0030g02280.t01	Wine grape	plastid	33.79	30.84
Solyc06g005220.2.1	Tomato	cytosol	24.02	30.3
PGSC0003DMT400025067	Potato	cytosol	28.12	30.25
PGSC0003DMT400053185	Potato	mitochondrion	34.77	30.17
CDX68680	Canola	mitochondrion	26.56	29.44
KRH38755	Soybean	mitochondrion	33.98	29.29
PGSC0003DMT400053556	Potato	mitochondrion	25.98	28.98
PGSC0003DMT400053182	Potato	cytosol	33.2	28.38
CDY31277	Canola	plastid	53.12	28.36
CDY66357	Canola	cytosol	20.7	27.97
CDY34370	Canola	cytosol	43.36	27.04
VIT_14s0030g02260.t01	Wine grape	cytosol	23.24	26.86
PGSC0003DMT400015298	Potato	mitochondrion	31.05	26.07
PGSC0003DMT400015293	Potato	mitochondrion	31.05	26.07
Solyc04g080120.1.1	Tomato	extracellular	30.47	25.49
CDY34680	Canola	cytosol	28.52	16.01
CDY21063	Canola	plastid	4.1	3.83

Protein Annotations

EnsemblPlants:CDY33797	EnsemblPlantsGene:GSBRNA2T00055220001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR44149	PANTHER:PTHR44149:SF3
PFAM:PF12854	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	ProteinID:CDY33797	ProteinID:CDY33797.1
SEG:seg	TIGRFAMs:TIGR00756	UniParc:UPI0004EDFBCF	UniProt:A0A078H8E4	MapMan:35.1	:

Description

BnaA09g46030DBnaA09g46030D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H8E4]

Coordinates

chrLK032321:+:373454..375327

Molecular Weight (calculated)

56896.2 Da

IEP (calculated)

7.110

GRAVY (calculated)

-0.033

Length

512 amino acids

Sequence
(BLAST)

001: MIRRTCIPLH RKAFALVQPR FSGTGTSIGS SSDRNFSYKE KLRSGLVDIK KDDAVALFQS MIQSRPLPTV VDFSRLFSGI ARTKQYDLVL SLCKQMESNG
101: IAHDLYTLSI VINCFCRRRK LGFAFSVFGK MLKLGYEPTT VTFSTLINGL CLEGRVSEAV ELVDRIDRMM STRSIYLWSG FEQNVLCKDE SLDDALSLFS
201: EMETKGIKAN VFTYTSLIGG FCNAGRWDDG AQLLRDMITR DITPDVVTFN ALIDSFVKEG KLTEAQELYN EMITRGIDPN TITYTTLIYG LCMENRLDEA
301: NQMMDLMVSK GCDPNSVTYS ILINGYCKNK LVDEGMRLFR KMSVRGVVAD TVTYSTLIQG FCQTGKPKVA KELFQEMVSI GVPPSVVDGA WDLFCSLPSK
401: GVKPNVKTFT VMISGLCKKG SLPEANILLR KMEEDGIVPN VCTYNTLIRA HLSGGDISNS VELIEEMKRC GFSADASTIK MVMDMLSDGR LDKSFLDMLS
501: GPFGDKSSSS LD

Best Arabidopsis Sequence Match ( AT1G12300.1 )
(BLAST)

001: MVKLMIRRLS SQVSKFVQPR LLETGTLRIA LINCPNELSF CCERGFSAFS DRNLSYRERL RSGLVDIKAD DAIDLFRDMI HSRPLPTVID FSRLFSAIAK
101: TKQYDLVLAL CKQMELKGIA HNLYTLSIMI NCFCRCRKLC LAFSAMGKII KLGYEPNTIT FSTLINGLCL EGRVSEALEL VDRMVEMGHK PDLITINTLV
201: NGLCLSGKEA EAMLLIDKMV EYGCQPNAVT YGPVLNVMCK SGQTALAMEL LRKMEERNIK LDAVKYSIII DGLCKHGSLD NAFNLFNEME MKGITTNIIT
301: YNILIGGFCN AGRWDDGAKL LRDMIKRKIN PNVVTFSVLI DSFVKEGKLR EAEELHKEMI HRGIAPDTIT YTSLIDGFCK ENHLDKANQM VDLMVSKGCD
401: PNIRTFNILI NGYCKANRID DGLELFRKMS LRGVVADTVT YNTLIQGFCE LGKLNVAKEL FQEMVSRKVP PNIVTYKILL DGLCDNGESE KALEIFEKIE
501: KSKMELDIGI YNIIIHGMCN ASKVDDAWDL FCSLPLKGVK PGVKTYNIMI GGLCKKGPLS EAELLFRKME EDGHAPDGWT YNILIRAHLG DGDATKSVKL
601: IEELKRCGFS VDASTIKMVI DMLSDGRLKK SFLDMLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g12300, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q0WKV3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.