CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31271	Canola	mitochondrion	62.15	72.63
CDY68929	Canola	mitochondrion	74.82	70.02
CDY51169	Canola	cytosol	48.94	65.72
CDY26589	Canola	cytosol	7.92	65.22
CDY33797	Canola	mitochondrion	58.1	64.45
CDY00489	Canola	mitochondrion	66.37	64.33
CDY26607	Canola	cytosol	51.41	63.9
CDY33753	Canola	mitochondrion	49.47	63.29
AT3G22470.1	Thale cress	cytosol, mitochondrion	68.49	62.84
CDY16033	Canola	cytosol	16.55	62.67
AT1G12620.1	Thale cress	cytosol, mitochondrion	68.31	62.48
CDY16110	Canola	extracellular	45.07	62.44
CDY26565	Canola	mitochondrion	62.32	62.21
CDY26588	Canola	extracellular	34.68	60.8
CDY16032	Canola	mitochondrion	43.66	60.78
CDY35831	Canola	mitochondrion	54.75	60.39
CDX71969	Canola	cytosol	42.08	60.35
AT1G12300.1	Thale cress	mitochondrion	67.61	60.28
CDY34870	Canola	mitochondrion	30.46	60.28
CDY26593	Canola	cytosol	64.61	60.26
AT1G12775.1	Thale cress	cytosol, mitochondrion	66.55	58.7
CDY16031	Canola	cytosol	31.87	58.2
CDY16003	Canola	cytosol, plastid	38.91	56.52
CDY16026	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	53.87	55.74
CDY16002	Canola	cytosol	30.46	55.63
CDY34375	Canola	mitochondrion	46.48	51.06
CDY15970	Canola	cytosol	8.1	48.94
CDY34688	Canola	cytosol	31.16	48.9
CDX68679	Canola	cytosol	9.86	48.7
CDY03257	Canola	cytosol	32.75	47.57
CDY39810	Canola	cytosol	32.57	47.31
CDY65983	Canola	mitochondrion	35.04	47.16
CDY09968	Canola	cytosol	24.12	46.6
CDY46909	Canola	mitochondrion	23.94	46.58
CDX67634	Canola	cytosol	34.68	46.57
CDY06217	Canola	cytosol	23.77	46.08
CDY25492	Canola	mitochondrion	39.26	45.42
CDX69436	Canola	plastid	39.79	45.38
CDY66358	Canola	mitochondrion	30.99	45.13
CDY46912	Canola	mitochondrion	38.91	44.74
CDY49646	Canola	mitochondrion	39.26	44.51
CDY08386	Canola	cytosol	34.51	44.04
CDY46394	Canola	mitochondrion	36.97	43.66
CDY34969	Canola	mitochondrion	38.56	43.28
CDY48949	Canola	mitochondrion	36.62	43.24
CDY25522	Canola	mitochondrion, plastid	33.45	42.51
VIT_12s0028g02320.t01	Wine grape	mitochondrion	35.39	42.14
CDY25519	Canola	mitochondrion, plastid	45.42	40.38
CDY47835	Canola	mitochondrion	30.99	40.27
Solyc06g007280.2.1	Tomato	cytosol	17.96	40.0
CDX81633	Canola	extracellular, golgi, plasma membrane	63.73	39.82
CDY28348	Canola	mitochondrion, plastid	40.14	38.13
VIT_14s0081g00270.t01	Wine grape	plastid	38.03	37.24
CDY29251	Canola	mitochondrion	33.1	37.08
VIT_14s0081g00110.t01	Wine grape	cytosol	31.34	36.25
CDX89301	Canola	plastid	33.63	35.7
VIT_14s0081g00120.t01	Wine grape	plastid	36.62	35.68
CDY31277	Canola	plastid	60.21	35.66
PGSC0003DMT400008759	Potato	cytosol	19.72	35.11
PGSC0003DMT400008760	Potato	mitochondrion	35.92	34.81
KRH75063	Soybean	mitochondrion, plastid	36.97	34.77
PGSC0003DMT400052977	Potato	cytosol	23.77	34.7
Solyc06g007300.1.1	Tomato	extracellular	36.09	34.63
KRH70370	Soybean	cytosol	33.1	34.56
PGSC0003DMT400008757	Potato	cytosol	30.28	34.54
KRH58843	Soybean	nucleus	37.15	34.53
KRH42744	Soybean	mitochondrion	37.15	34.53
KRH75045	Soybean	mitochondrion	36.27	34.51
KRH75048	Soybean	mitochondrion	36.8	34.38
PGSC0003DMT400025074	Potato	cytosol	33.27	34.24
KRH49698	Soybean	cytosol	34.15	34.04
Solyc06g007740.1.1	Tomato	cytosol	35.21	33.9
CDX68680	Canola	mitochondrion	27.29	33.55
Solyc06g005220.2.1	Tomato	cytosol	23.94	33.5
PGSC0003DMT400053185	Potato	mitochondrion	34.68	33.39
CDY66357	Canola	cytosol	22.18	33.25
PGSC0003DMT400052971	Potato	mitochondrion	34.68	33.22
VIT_14s0081g00280.t01	Wine grape	mitochondrion	37.32	33.18
PGSC0003DMT400056663	Potato	plastid	34.33	33.16
PGSC0003DMT400025087	Potato	endoplasmic reticulum	28.87	33.13
KRH38755	Soybean	mitochondrion	34.51	33.0
PGSC0003DMT400056665	Potato	mitochondrion	33.98	32.77
KRH09256	Soybean	mitochondrion	32.04	32.56
Solyc06g007810.1.1	Tomato	cytosol	15.32	32.46
PGSC0003DMT400025067	Potato	cytosol	26.58	31.72
CDY34370	Canola	cytosol	45.77	31.67
PGSC0003DMT400053182	Potato	cytosol	33.27	31.55
VIT_14s0030g02280.t01	Wine grape	plastid	30.81	31.19
PGSC0003DMT400053556	Potato	mitochondrion	25.18	31.15
VIT_14s0030g02260.t01	Wine grape	cytosol	22.89	29.35
PGSC0003DMT400015293	Potato	mitochondrion	31.34	29.18
PGSC0003DMT400015298	Potato	mitochondrion	31.34	29.18
Solyc04g080120.1.1	Tomato	extracellular	30.28	28.1
CDY34680	Canola	cytosol	29.05	18.09
CDY21063	Canola	plastid	5.99	6.19

Protein Annotations

EnsemblPlants:CDY31272	EnsemblPlantsGene:GSBRNA2T00047432001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1649
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	ProteinID:CDY31272	ProteinID:CDY31272.1	TIGRFAMs:TIGR00756
UniParc:UPI0004EF0C9D	UniProt:A0A078H189	MapMan:35.1	:	:	:

Description

BnaC08g15670DBnaC08g15670D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H189]

Coordinates

chrLK032269:-:437928..439768

Molecular Weight (calculated)

63144.2 Da

IEP (calculated)

7.251

GRAVY (calculated)

0.010

Length

568 amino acids

Sequence
(BLAST)

001: MKRYVQTRLL QTGTLFLSER AFSTLGIGKK VSYRERLRIG VVDIKKDDAV DLFQSMVQSR PLPSIVDFGR LFGAVAKTRQ DDLVLSLCKQ MELHGIAHNI
101: YSLSIVVNCF CRRRKLGFAF SVMGKMLKLG YEPDTVTFST LVNGLCLEGG VSEAVALVDR MVETKVRPNL ITLSTLINGL CLNSKVSEAV ALIDRVVEHG
201: CQPDVCTYGP VLNSISKVKL NVVHYSMVVD SLCKEGKYDD ALSLFNEMET KGIKANVFTY NTLIGSFCKA GRWDDGAQLL RDMITREITP DVITFSALID
301: CLVKEGKVKE AKELYSEMVA RGIDPDTITY NSLIDRLCIE NRLDEANQMM DLMGSKGCEP SIVTYGTFIN GYCKAKRVDD GMKLFREISL RGLVANTVTY
401: STLIQGFCQS EDGLCDNGEL QEALDILVNM QKNKMELDIG IYSIIIHGMC KANKVDDAWD LFSNLHLKGV KPDVRTYTIM FGGLCKKGSL SEAYMLFRKM
501: KEDGIAPNEC TYNTLIRAHL GGSGAATSVE LIEEMKRCGF NADASTMKMV IDMLSDSRLN KSFLSMLS

Best Arabidopsis Sequence Match ( AT1G12620.1 )
(BLAST)

001: MRGLIQTRLL ETGTLRTALF LSCYGRVFSS VSDGKGKVSY RERLRSGIVD IKEDDAVDLF QEMTRSRPRP RLIDFSRLFS VVARTKQYDL VLDLCKQMEL
101: KGIAHNLYTL SIMINCCCRC RKLSLAFSAM GKIIKLGYEP DTVTFSTLIN GLCLEGRVSE ALELVDRMVE MGHKPTLITL NALVNGLCLN GKVSDAVLLI
201: DRMVETGFQP NEVTYGPVLK VMCKSGQTAL AMELLRKMEE RKIKLDAVKY SIIIDGLCKD GSLDNAFNLF NEMEIKGFKA DIIIYTTLIR GFCYAGRWDD
301: GAKLLRDMIK RKITPDVVAF SALIDCFVKE GKLREAEELH KEMIQRGISP DTVTYTSLID GFCKENQLDK ANHMLDLMVS KGCGPNIRTF NILINGYCKA
401: NLIDDGLELF RKMSLRGVVA DTVTYNTLIQ GFCELGKLEV AKELFQEMVS RRVRPDIVSY KILLDGLCDN GEPEKALEIF EKIEKSKMEL DIGIYNIIIH
501: GMCNASKVDD AWDLFCSLPL KGVKPDVKTY NIMIGGLCKK GSLSEADLLF RKMEEDGHSP NGCTYNILIR AHLGEGDATK SAKLIEEIKR CGFSVDASTV
601: KMVVDMLSDG RLKKSFLDML S

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g12620 [Source:UniProtKB/Swiss-Prot;Acc:Q9ASZ8]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.