CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

cytosol 2
extracellular 5
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, secretory
BaCelLo:	cytosol
iPSORT:	secretory
MultiLoc:	extracellular
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26588	Canola	extracellular	56.83	71.91
Bra026884.1-P	Field mustard	cytosol	80.0	71.46
CDY51169	Canola	cytosol	72.68	70.45
CDY16031	Canola	cytosol	50.49	66.56
CDY26589	Canola	cytosol	10.98	65.22
CDY16002	Canola	cytosol	49.02	64.63
CDY26607	Canola	cytosol	70.98	63.68
CDX71969	Canola	cytosol	58.29	60.35
CDY16033	Canola	cytosol	21.95	60.0
CDY35831	Canola	mitochondrion	70.24	55.92
CDY33753	Canola	mitochondrion	60.49	55.86
CDY00489	Canola	mitochondrion	77.32	54.1
CDY33797	Canola	mitochondrion	64.88	51.95
Bra026836.1-P	Field mustard	cytosol, mitochondrion	62.2	51.93
CDY26565	Canola	mitochondrion	70.98	51.14
CDY34688	Canola	cytosol	44.88	50.83
CDY26593	Canola	cytosol	75.12	50.57
CDY16026	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	64.15	47.91
CDY68929	Canola	mitochondrion	70.24	47.45
AT3G22470.1	Thale cress	cytosol, mitochondrion	70.24	46.53
CDY15970	Canola	cytosol	10.49	45.74
CDY31272	Canola	mitochondrion	62.44	45.07
AT1G12620.1	Thale cress	cytosol, mitochondrion	67.8	44.77
CDY09968	Canola	cytosol	31.71	44.22
AT1G12300.1	Thale cress	mitochondrion	68.29	43.96
CDY34870	Canola	mitochondrion	30.73	43.9
CDY06217	Canola	cytosol	31.22	43.69
CDY34375	Canola	mitochondrion	53.41	42.36
AT1G12775.1	Thale cress	cytosol, mitochondrion	66.1	42.08
CDY31271	Canola	mitochondrion	49.76	41.98
CDX68679	Canola	cytosol	10.98	39.13
CDY16032	Canola	mitochondrion	38.78	38.97
Solyc06g007280.2.1	Tomato	cytosol	24.15	38.82
CDY16003	Canola	cytosol, plastid	36.59	38.36
Solyc06g005220.2.1	Tomato	cytosol	36.59	36.95
CDY03257	Canola	cytosol	35.12	36.83
PGSC0003DMT400052977	Potato	cytosol	34.63	36.5
CDY39810	Canola	cytosol	34.63	36.32
CDY46909	Canola	mitochondrion	25.85	36.3
CDY25522	Canola	mitochondrion, plastid	38.54	35.35
VIT_14s0081g00110.t01	Wine grape	cytosol	41.95	35.03
CDX67634	Canola	cytosol	36.1	34.99
CDX81633	Canola	extracellular, golgi, plasma membrane	77.07	34.76
PGSC0003DMT400008759	Potato	cytosol	26.59	34.17
Solyc06g007810.1.1	Tomato	cytosol	21.95	33.58
CDY08386	Canola	cytosol	35.61	32.81
VIT_12s0028g02320.t01	Wine grape	mitochondrion	36.59	31.45
CDY66357	Canola	cytosol	28.78	31.13
CDX69436	Canola	plastid	37.8	31.12
CDY46394	Canola	mitochondrion	36.34	30.98
PGSC0003DMT400025067	Potato	cytosol	35.85	30.88
CDY49646	Canola	mitochondrion	37.32	30.54
CDY25519	Canola	mitochondrion, plastid	47.56	30.52
CDY48949	Canola	mitochondrion	35.61	30.35
VIT_14s0081g00270.t01	Wine grape	plastid	42.93	30.34
PGSC0003DMT400025087	Potato	endoplasmic reticulum	36.59	30.3
CDY25492	Canola	mitochondrion	36.1	30.14
CDY46912	Canola	mitochondrion	35.61	29.55
VIT_14s0081g00120.t01	Wine grape	plastid	41.46	29.16
PGSC0003DMT400008757	Potato	cytosol	35.12	28.92
KRH70370	Soybean	cytosol	38.29	28.86
CDY34969	Canola	mitochondrion	35.37	28.66
PGSC0003DMT400025074	Potato	cytosol	38.29	28.44
KRH49698	Soybean	cytosol	39.02	28.07
VIT_14s0030g02260.t01	Wine grape	cytosol	30.24	27.99
CDY65983	Canola	mitochondrion	28.54	27.73
CDY29251	Canola	mitochondrion	33.66	27.22
CDY47835	Canola	mitochondrion	28.78	27.0
PGSC0003DMT400008760	Potato	mitochondrion	38.29	26.79
Solyc06g007740.1.1	Tomato	cytosol	38.29	26.61
CDX89301	Canola	plastid	34.63	26.54
PGSC0003DMT400056665	Potato	mitochondrion	37.8	26.32
Solyc06g007300.1.1	Tomato	extracellular	37.8	26.18
KRH75063	Soybean	mitochondrion, plastid	38.54	26.16
KRH75045	Soybean	mitochondrion	37.8	25.96
PGSC0003DMT400052971	Potato	mitochondrion	37.32	25.8
KRH42744	Soybean	mitochondrion	37.8	25.37
VIT_14s0081g00280.t01	Wine grape	mitochondrion	39.51	25.35
PGSC0003DMT400056663	Potato	plastid	36.34	25.34
CDX68680	Canola	mitochondrion	28.54	25.32
CDY28348	Canola	mitochondrion, plastid	36.83	25.25
KRH75048	Soybean	mitochondrion	37.32	25.16
KRH09256	Soybean	mitochondrion	34.15	25.04
KRH58843	Soybean	nucleus	37.32	25.04
KRH38755	Soybean	mitochondrion	36.1	24.92
CDY66358	Canola	mitochondrion	23.66	24.87
PGSC0003DMT400053185	Potato	mitochondrion	35.61	24.75
VIT_14s0030g02280.t01	Wine grape	plastid	33.41	24.42
PGSC0003DMT400053182	Potato	cytosol	34.39	23.54
CDY34370	Canola	cytosol	47.07	23.51
Solyc04g080120.1.1	Tomato	extracellular	34.63	23.2
PGSC0003DMT400015293	Potato	mitochondrion	34.39	23.11
PGSC0003DMT400015298	Potato	mitochondrion	34.39	23.11
PGSC0003DMT400053556	Potato	mitochondrion	25.61	22.88
CDY31277	Canola	plastid	48.54	20.75
CDY34680	Canola	cytosol	34.15	15.35
CDY21063	Canola	plastid	0.0	0.0

Protein Annotations

EnsemblPlants:CDY16110	EnsemblPlantsGene:GSBRNA2T00090531001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1649
PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	ProteinID:CDY16110	ProteinID:CDY16110.1	SignalP:SignalP-noTM
SUPFAM:SSF81901	TIGRFAMs:TIGR00756	UniParc:UPI0004EDB7BC	UniProt:A0A078FNU4	MapMan:35.1	:

Description

BnaC08g40130DBnaC08g40130D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FNU4]

Coordinates

chrLK032060:-:705143..706519

Molecular Weight (calculated)

45869.9 Da

IEP (calculated)

6.073

GRAVY (calculated)

-0.074

Length

410 amino acids

Sequence
(BLAST)

001: MKVIPNLIIL NTLVNGLSVA LIDRMMENGC QPDQFTYGPI LNRMCKSGNT ASALDLLRKM EHRKIKPHVV TYNIIIDTLC KDGNLDDALN LFNEMETKGI
101: KAHVFTYNSL IGGFCSAGRW DNGAQWLSDM ISRDITPNIV TFNALIDCFV KEGKLSEAQE LYNEMITRGI DPDTITYSTL IYGLCNEKRL DEANQMMDLM
201: VSKGCDPSIV TYSILINGYC KAKRVDEGMR LFRNMSVRGV IANTVTYSTL IQGFCQSGQL NVAKELFQEM VSEGVHPNIM TYGILLDGKI DDAWDLFCSL
301: SLKGVKPDVK MYTVMISGLC KKGSLSEADA LFRKLKEDRC EPGDCTYNTL IRAHLRGRDI STSAKLIEEM KRCRFSADAS TIKLVMDMLV DGSLDKSFLD
401: MLSGPFRDIS

Best Arabidopsis Sequence Match ( AT1G12300.1 )
(BLAST)

001: MVKLMIRRLS SQVSKFVQPR LLETGTLRIA LINCPNELSF CCERGFSAFS DRNLSYRERL RSGLVDIKAD DAIDLFRDMI HSRPLPTVID FSRLFSAIAK
101: TKQYDLVLAL CKQMELKGIA HNLYTLSIMI NCFCRCRKLC LAFSAMGKII KLGYEPNTIT FSTLINGLCL EGRVSEALEL VDRMVEMGHK PDLITINTLV
201: NGLCLSGKEA EAMLLIDKMV EYGCQPNAVT YGPVLNVMCK SGQTALAMEL LRKMEERNIK LDAVKYSIII DGLCKHGSLD NAFNLFNEME MKGITTNIIT
301: YNILIGGFCN AGRWDDGAKL LRDMIKRKIN PNVVTFSVLI DSFVKEGKLR EAEELHKEMI HRGIAPDTIT YTSLIDGFCK ENHLDKANQM VDLMVSKGCD
401: PNIRTFNILI NGYCKANRID DGLELFRKMS LRGVVADTVT YNTLIQGFCE LGKLNVAKEL FQEMVSRKVP PNIVTYKILL DGLCDNGESE KALEIFEKIE
501: KSKMELDIGI YNIIIHGMCN ASKVDDAWDL FCSLPLKGVK PGVKTYNIMI GGLCKKGPLS EAELLFRKME EDGHAPDGWT YNILIRAHLG DGDATKSVKL
601: IEELKRCGFS VDASTIKMVI DMLSDGRLKK SFLDMLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g12300, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q0WKV3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.