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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY25519 Canola mitochondrion, plastid 72.59 93.27
Bra027656.1-P Field mustard cytosol 92.08 80.34
CDY26588 Canola extracellular 20.34 51.54
CDY16031 Canola cytosol 19.0 50.16
CDY16002 Canola cytosol 18.51 48.87
CDY16110 Canola extracellular 23.51 47.07
CDY51169 Canola cytosol 23.75 46.1
CDY31272 Canola mitochondrion 31.67 45.77
CDY31271 Canola mitochondrion 27.04 45.68
CDY34870 Canola mitochondrion 15.59 44.6
CDY33753 Canola mitochondrion 24.0 44.37
CDY26607 Canola cytosol 24.6 44.2
CDY68929 Canola mitochondrion 32.52 43.99
CDY00489 Canola mitochondrion 31.18 43.69
CDY65983 Canola mitochondrion 22.41 43.6
CDY09968 Canola cytosol 15.59 43.54
CDY33797 Canola mitochondrion 27.04 43.36
CDY25492 Canola mitochondrion 25.82 43.18
CDY06217 Canola cytosol 15.35 43.0
CDY34688 Canola cytosol 18.88 42.82
CDY03257 Canola cytosol 20.34 42.71
AT1G64100.2 Thale cress cytosol 41.9 42.68
CDX69436 Canola plastid 25.82 42.57
CDY34375 Canola mitochondrion 26.8 42.55
CDY39810 Canola cytosol 20.22 42.46
CDY16026 Canola cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole 28.38 42.44
CDX71969 Canola cytosol 20.46 42.42
CDX67634 Canola cytosol 21.8 42.32
CDY46909 Canola mitochondrion 14.86 41.78
CDY35831 Canola mitochondrion 26.19 41.75
CDY66358 Canola mitochondrion 19.73 41.54
VIT_12s0028g02320.t01 Wine grape mitochondrion 24.12 41.51
CDY26593 Canola cytosol 30.69 41.38
CDY16032 Canola mitochondrion 20.46 41.18
CDY26565 Canola mitochondrion 28.5 41.12
CDY49646 Canola mitochondrion 24.85 40.72
CDY08386 Canola cytosol 21.92 40.45
CDY48949 Canola mitochondrion 23.14 39.5
CDY16003 Canola cytosol, plastid 18.76 39.39
CDY46394 Canola mitochondrion 23.02 39.29
Solyc06g007280.2.1 Tomato cytosol 12.06 38.82
CDY34969 Canola mitochondrion 23.87 38.74
CDY47835 Canola mitochondrion 20.58 38.67
CDY46912 Canola mitochondrion 23.14 38.46
CDY29251 Canola mitochondrion 22.9 37.08
VIT_14s0081g00270.t01 Wine grape plastid 26.07 36.9
VIT_14s0081g00110.t01 Wine grape cytosol 21.44 35.85
CDX89301 Canola plastid 23.26 35.7
VIT_14s0081g00120.t01 Wine grape plastid 25.21 35.51
CDY25522 Canola mitochondrion, plastid 19.24 35.35
CDY28348 Canola mitochondrion, plastid 25.58 35.12
KRH70370 Soybean cytosol 22.9 34.56
Solyc06g005220.2.1 Tomato cytosol 16.93 34.24
VIT_14s0030g02280.t01 Wine grape plastid 23.02 33.69
KRH58843 Soybean nucleus 24.97 33.55
PGSC0003DMT400008757 Potato cytosol 20.34 33.53
KRH42744 Soybean mitochondrion 24.6 33.06
KRH49698 Soybean cytosol 22.78 32.81
VIT_14s0081g00280.t01 Wine grape mitochondrion 25.46 32.71
PGSC0003DMT400008759 Potato cytosol 12.55 32.29
PGSC0003DMT400052977 Potato cytosol 15.23 32.13
KRH38755 Soybean mitochondrion 23.14 31.99
PGSC0003DMT400008760 Potato mitochondrion 22.78 31.91
PGSC0003DMT400025074 Potato cytosol 21.44 31.88
PGSC0003DMT400056665 Potato mitochondrion 22.78 31.75
Solyc06g007740.1.1 Tomato cytosol 22.78 31.69
KRH09256 Soybean mitochondrion 21.56 31.66
PGSC0003DMT400056663 Potato plastid 22.53 31.46
Solyc06g007300.1.1 Tomato extracellular 22.66 31.42
KRH75045 Soybean mitochondrion 22.78 31.32
KRH75063 Soybean mitochondrion, plastid 22.9 31.13
PGSC0003DMT400052971 Potato mitochondrion 22.41 31.03
KRH75048 Soybean mitochondrion 22.9 30.92
PGSC0003DMT400025087 Potato endoplasmic reticulum 18.64 30.91
CDX68680 Canola mitochondrion 17.3 30.74
CDY66357 Canola cytosol 14.01 30.34
PGSC0003DMT400053556 Potato mitochondrion 16.93 30.28
PGSC0003DMT400053182 Potato cytosol 22.05 30.22
PGSC0003DMT400053185 Potato mitochondrion 21.44 29.83
CDY15970 Canola cytosol 3.41 29.79
PGSC0003DMT400015298 Potato mitochondrion 21.8 29.34
PGSC0003DMT400015293 Potato mitochondrion 21.8 29.34
CDY16033 Canola cytosol 5.36 29.33
CDX81633 Canola extracellular, golgi, plasma membrane 32.4 29.26
Solyc04g080120.1.1 Tomato extracellular 21.32 28.59
PGSC0003DMT400025067 Potato cytosol 16.57 28.57
VIT_14s0030g02260.t01 Wine grape cytosol 15.23 28.22
Solyc06g007810.1.1 Tomato cytosol 9.14 27.99
CDX68679 Canola cytosol 3.65 26.09
CDY26589 Canola cytosol 2.07 24.64
CDY31277 Canola plastid 24.48 20.96
CDY34680 Canola cytosol 19.37 17.43
CDY21063 Canola plastid 2.68 4.01
Protein Annotations
EnsemblPlants:CDY34370EnsemblPlantsGene:GSBRNA2T00056426001Gene3D:1.25.40.10GO:A0A078H738GO:GO:0003674GO:GO:0005488
GO:GO:0005515InterPro:IPR002885InterPro:IPR011990InterPro:Pentatricopeptide_repeatInterPro:TPR-like_helical_dom_sfPFAM:PF01535
PFAM:PF12854PFAM:PF13041PFscan:PS51375ProteinID:CDY34370ProteinID:CDY34370.1SUPFAM:SSF81901
TIGRFAMs:TIGR00756UniParc:UPI0004EE06AAUniProt:A0A078H738MapMan:15.5.2.2::
Description
BnaA09g11120DBnaA09g11120D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H738]
Coordinates
chrLK032333:-:159284..171646
Molecular Weight (calculated)
92778.5 Da
IEP (calculated)
7.366
GRAVY (calculated)
-0.153
Length
821 amino acids
Sequence
(BLAST)
001: MDDSNRLHRL RSHKQTKFIR YNSEEVTSIK WEFINMTEQE EDLISRMYRL VGNRWDLIAG RFFQRSTKNE MLARVFRFES SSSVPAARLF CTRSILHTLA
101: KKRSGKAGGF GGETLKLQSG IHEIKGLDDA IDLFSYMVRS RPLPCVVDFC KLLGVVVRME RPDVVISLHR KMEMRRIPCN IYSFTILIKC FCSCSKLPFA
201: LSTFGKLTKL GFHPTLVTFT TLLHGLCVEE RVSEALRFFH RICKPNVVTF TTLMNGLCRE GRVVEAVALL DRMVEDGLQP NQITYGTIVD GMCKMGDTVS
301: ALNLLRKMEE VSRIKPNVVI YSAVIDGLWK DGRRSDAQNV FSEMQEKGVF PNLFTYNCMI VGFCSSGRWS EAQRLLQEMF ERKINPDVVT FSGLINALVK
401: EGKFFEAEEL YYEMLQRGII PNTITYNSMI DGFSKQNRLD AAEHMFYLMA TKGCSPDVIT FSILIDGYCR AKRVDDGMEI LHEMSRRGLV ANTITYTTLI
501: HGFCQVGNLN TALDLLQEMI SSGVCPNVVT CNTLLDGLCN NGKLKDALEM FKAMQKSKMD LDAIPNTITY NSVIDGLCKQ SRLDEATQMF DSMGSKGFSP
601: DVVTFTTLIN GYCKVGRVGD GLEVFCEMGR RGIVANAITY RTLIHGFCQV GNINGALDIF QEMISSGVYP DTITIRNMLT GLCSKEELER AVAMLEDLQM
701: SVGTYFEVSD PPKLLSRDRL RCSKTDTTPK EQKIAVSSDL DADHVIRCVD QKLRKTFPEA STSSNQEAAQ QSSLGSYKEF DFGTDEKHLT VDDEHRAYQE
801: QQRLVLPCDA IRYPYSSPHL I
Best Arabidopsis Sequence Match ( AT1G64100.1 )
(BLAST)
001: MTLQSQSSHC LNVHSSMVRD IEKCEQKTKR DIEKKNTKSG GVRLNSRRLI HGRVAEKGTK SLPSLTQVTF EGEELKLKSG SHYFKSLDDA IDFFDYMVRS
101: RPFYTAVDCN KVIGVFVRMN RPDVAISLYR KMEIRRIPLN IYSFNILIKC FCDCHKLSFS LSTFGKLTKL GFQPDVVTFN TLLHGLCLED RISEALALFG
201: YMVETGFLEA VALFDQMVEI GLTPVVITFN TLINGLCLEG RVLEAAALVN KMVGKGLHID VVTYGTIVNG MCKMGDTKSA LNLLSKMEET HIKPDVVIYS
301: AIIDRLCKDG HHSDAQYLFS EMLEKGIAPN VFTYNCMIDG FCSFGRWSDA QRLLRDMIER EINPDVLTFN ALISASVKEG KLFEAEKLCD EMLHRCIFPD
401: TVTYNSMIYG FCKHNRFDDA KHMFDLMASP DVVTFNTIID VYCRAKRVDE GMQLLREISR RGLVANTTTY NTLIHGFCEV DNLNAAQDLF QEMISHGVCP
501: DTITCNILLY GFCENEKLEE ALELFEVIQM SKIDLDTVAY NIIIHGMCKG SKVDEAWDLF CSLPIHGVEP DVQTYNVMIS GFCGKSAISD ANVLFHKMKD
601: NGHEPDNSTY NTLIRGCLKA GEIDKSIELI SEMRSNGFSG DAFTIKMVAD LITDGRLDKS FSDMLS
Arabidopsis Description
Pentatricopeptide (PPR) repeat-containing protein [Source:UniProtKB/TrEMBL;Acc:A8MRJ8]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.