CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16003	Canola	cytosol, plastid	56.13	58.57
CDY34870	Canola	mitochondrion	40.69	57.84
CDY26588	Canola	extracellular	40.93	51.54
CDY31271	Canola	mitochondrion	58.09	48.77
CDY00489	Canola	mitochondrion	69.61	48.46
CDY26565	Canola	mitochondrion	65.2	46.75
CDY33797	Canola	mitochondrion	58.09	46.29
CDY16026	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	61.27	45.54
CDY31272	Canola	mitochondrion	60.78	43.66
AT1G12300.1	Thale cress	mitochondrion	67.89	43.49
CDY35831	Canola	mitochondrion	53.92	42.72
AT1G12775.1	Thale cress	cytosol, mitochondrion	67.16	42.55
CDY68929	Canola	mitochondrion	63.24	42.5
AT1G12620.1	Thale cress	cytosol, mitochondrion	63.97	42.03
CDY26593	Canola	cytosol	62.25	41.71
CDY26607	Canola	cytosol	46.08	41.14
CDX71969	Canola	cytosol	39.71	40.91
AT3G22470.1	Thale cress	cytosol, mitochondrion	59.56	39.26
CDY16110	Canola	extracellular	38.97	38.78
CDY33753	Canola	mitochondrion	41.67	38.29
CDY16002	Canola	cytosol	28.68	37.62
CDY16031	Canola	cytosol	27.94	36.66
Bra026884.1-P	Field mustard	cytosol	39.46	35.08
Bra026836.1-P	Field mustard	cytosol, mitochondrion	41.91	34.83
CDY65983	Canola	mitochondrion	34.8	33.65
CDY51169	Canola	cytosol	33.82	32.62
CDY25492	Canola	mitochondrion	38.97	32.38
CDY66358	Canola	mitochondrion	30.88	32.31
CDY03257	Canola	cytosol	30.64	31.97
Solyc06g007280.2.1	Tomato	cytosol	19.85	31.76
CDY46912	Canola	mitochondrion	37.99	31.38
CDY39810	Canola	cytosol	29.9	31.2
CDX68680	Canola	mitochondrion	35.29	31.17
CDX67634	Canola	cytosol	31.62	30.5
CDY46394	Canola	mitochondrion	35.29	29.94
CDX69436	Canola	plastid	36.52	29.92
CDX81633	Canola	extracellular, golgi, plasma membrane	65.93	29.59
CDY49646	Canola	mitochondrion	36.03	29.34
CDY46909	Canola	mitochondrion	20.83	29.11
CDY48949	Canola	mitochondrion	34.31	29.11
CDY34375	Canola	mitochondrion	36.03	28.43
CDY25522	Canola	mitochondrion, plastid	31.13	28.41
VIT_12s0028g02320.t01	Wine grape	mitochondrion	32.84	28.09
CDY34969	Canola	mitochondrion	34.8	28.06
CDY08386	Canola	cytosol	30.15	27.64
CDY29251	Canola	mitochondrion	33.82	27.22
CDY47835	Canola	mitochondrion	28.92	27.0
CDY25519	Canola	mitochondrion, plastid	42.16	26.92
CDX89301	Canola	plastid	33.58	25.61
CDY28348	Canola	mitochondrion, plastid	35.54	24.25
VIT_14s0081g00120.t01	Wine grape	plastid	34.56	24.19
VIT_14s0081g00270.t01	Wine grape	plastid	34.31	24.14
KRH70370	Soybean	cytosol	31.86	23.9
CDY06217	Canola	cytosol	17.16	23.89
CDY09968	Canola	cytosol	17.16	23.81
VIT_14s0030g02280.t01	Wine grape	plastid	32.6	23.71
KRH58843	Soybean	nucleus	35.05	23.4
PGSC0003DMT400025074	Potato	cytosol	31.37	23.19
KRH75045	Soybean	mitochondrion	33.82	23.12
KRH75063	Soybean	mitochondrion, plastid	34.07	23.01
KRH42744	Soybean	mitochondrion	34.31	22.91
KRH49698	Soybean	cytosol	31.37	22.46
PGSC0003DMT400053556	Potato	mitochondrion	25.25	22.44
KRH75048	Soybean	mitochondrion	33.09	22.2
PGSC0003DMT400008760	Potato	mitochondrion	31.13	21.67
Solyc06g007300.1.1	Tomato	extracellular	31.37	21.62
Solyc06g007740.1.1	Tomato	cytosol	30.88	21.36
PGSC0003DMT400008757	Potato	cytosol	25.98	21.29
PGSC0003DMT400056665	Potato	mitochondrion	30.64	21.22
KRH09256	Soybean	mitochondrion	28.92	21.11
VIT_14s0081g00110.t01	Wine grape	cytosol	25.0	20.77
PGSC0003DMT400052971	Potato	mitochondrion	30.15	20.74
KRH38755	Soybean	mitochondrion	30.15	20.71
PGSC0003DMT400056663	Potato	plastid	29.66	20.58
PGSC0003DMT400053185	Potato	mitochondrion	29.66	20.51
CDY34370	Canola	cytosol	41.18	20.46
VIT_14s0081g00280.t01	Wine grape	mitochondrion	31.86	20.34
Solyc06g005220.2.1	Tomato	cytosol	20.1	20.2
PGSC0003DMT400025087	Potato	endoplasmic reticulum	24.02	19.8
CDY34688	Canola	cytosol	17.4	19.61
PGSC0003DMT400053182	Potato	cytosol	28.68	19.53
PGSC0003DMT400015298	Potato	mitochondrion	28.68	19.18
PGSC0003DMT400015293	Potato	mitochondrion	28.68	19.18
Solyc04g080120.1.1	Tomato	extracellular	28.68	19.12
PGSC0003DMT400025067	Potato	cytosol	21.57	18.49
PGSC0003DMT400052977	Potato	cytosol	16.42	17.22
CDY66357	Canola	cytosol	15.69	16.89
CDY31277	Canola	plastid	37.99	16.16
PGSC0003DMT400008759	Potato	cytosol	8.58	10.97
VIT_14s0030g02260.t01	Wine grape	cytosol	11.03	10.16
CDY34680	Canola	cytosol	19.61	8.77
Solyc06g007810.1.1	Tomato	cytosol	4.41	6.72
CDY16033	Canola	cytosol	2.21	6.0
CDY21063	Canola	plastid	7.11	5.28
CDY26589	Canola	cytosol	0.74	4.35
CDX68679	Canola	cytosol	1.23	4.35
CDY15970	Canola	cytosol	0.74	3.19

Protein Annotations

EnsemblPlants:CDY16032	EnsemblPlantsGene:GSBRNA2T00090422001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1649
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	ProteinID:CDY16032
ProteinID:CDY16032.1	TIGRFAMs:TIGR00756	UniParc:UPI0004EEFDCA	UniProt:A0A078FT83	MapMan:35.1	:

Description

BnaC08g40910DBnaC08g40910D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FT83]

Coordinates

chrLK032060:+:253638..255044

Molecular Weight (calculated)

45683.4 Da

IEP (calculated)

8.613

GRAVY (calculated)

0.200

Length

408 amino acids

Sequence
(BLAST)

001: MLMIRSAKAL RFVRPLLLET GTLRTSLFHS PCESSCFVCE RGFSSDRNLC YRERLSSGIV GIKKDDAVAL FQTMIESRPR PTVIDFNRLF TALARTKQYD
101: LVLALCKQME LQGIAHNIYT LSIVINCFCR SRKLGFAFSA MGKILKLGYE PDTVTFSTLI NGLCLVGRVS EAVDLVDRLV GMKVIPNLII LNTLVNGLCL
201: KECASPVNTS SALDLIRKME HRKVKLNAAI YNIIIDSLCK DGSLDYALSL FNEMATKGIK ADVFTYNSLI GGFCSTGRWD DGTQLLRDMI TSEITPNIVT
301: FSVLIDSFVK VGKLTEAKEL YNEMIARGID LDTITCTSLI YGFCNEKRLD EANQMMELMV TKGCDPNIVT FNTLINGYCK ANGLMKGNLM WPRNSSKRWF
401: LKVFILVL

Best Arabidopsis Sequence Match ( AT1G12300.1 )
(BLAST)

001: MVKLMIRRLS SQVSKFVQPR LLETGTLRIA LINCPNELSF CCERGFSAFS DRNLSYRERL RSGLVDIKAD DAIDLFRDMI HSRPLPTVID FSRLFSAIAK
101: TKQYDLVLAL CKQMELKGIA HNLYTLSIMI NCFCRCRKLC LAFSAMGKII KLGYEPNTIT FSTLINGLCL EGRVSEALEL VDRMVEMGHK PDLITINTLV
201: NGLCLSGKEA EAMLLIDKMV EYGCQPNAVT YGPVLNVMCK SGQTALAMEL LRKMEERNIK LDAVKYSIII DGLCKHGSLD NAFNLFNEME MKGITTNIIT
301: YNILIGGFCN AGRWDDGAKL LRDMIKRKIN PNVVTFSVLI DSFVKEGKLR EAEELHKEMI HRGIAPDTIT YTSLIDGFCK ENHLDKANQM VDLMVSKGCD
401: PNIRTFNILI NGYCKANRID DGLELFRKMS LRGVVADTVT YNTLIQGFCE LGKLNVAKEL FQEMVSRKVP PNIVTYKILL DGLCDNGESE KALEIFEKIE
501: KSKMELDIGI YNIIIHGMCN ASKVDDAWDL FCSLPLKGVK PGVKTYNIMI GGLCKKGPLS EAELLFRKME EDGHAPDGWT YNILIRAHLG DGDATKSVKL
601: IEELKRCGFS VDASTIKMVI DMLSDGRLKK SFLDMLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g12300, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q0WKV3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.