CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
mitochondrion 6

Predictors

GFP

MS/MS

Papers

nucleus: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG98502
KRG98507
KRH46360
KRH46364

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	KRG98502	AT4G26630.1	25387881
AT1G62670.1	KRG98507	AT4G26630.1	25387881
AT1G62670.1	KRH46360	AT4G26630.1	25387881
AT1G62670.1	KRH46364	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH42744	Soybean	mitochondrion	94.11	94.11
KRH70370	Soybean	cytosol	51.39	57.72
KRH49698	Soybean	cytosol	52.37	56.14
KRH75063	Soybean	mitochondrion, plastid	54.34	54.97
KRH38755	Soybean	mitochondrion	53.19	54.71
KRH09256	Soybean	mitochondrion	49.26	53.85
KRH75045	Soybean	mitochondrion	52.54	53.77
KRH75048	Soybean	mitochondrion	53.36	53.62
VIT_12s0028g02320.t01	Wine grape	mitochondrion	38.79	49.69
VIT_14s0081g00120.t01	Wine grape	plastid	40.75	42.71
KRH39054	Soybean	cytosol	34.7	42.66
KRH39074	Soybean	cytosol	34.37	42.25
VIT_14s0081g00270.t01	Wine grape	plastid	40.1	42.24
KRH39004	Soybean	cytosol	34.21	42.05
VIT_14s0081g00110.t01	Wine grape	cytosol	33.72	41.96
KRH39057	Soybean	cytosol	34.04	41.85
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	34.21	41.39
KRH39072	Soybean	cytosol	33.55	41.33
KRH39112	Soybean	cytosol	33.39	41.05
CDX67634	Canola	cytosol	28.31	40.9
KRH08636	Soybean	cytosol	34.86	40.8
KRH40513	Soybean	plastid	23.4	40.74
CDY39810	Canola	cytosol	25.7	40.15
Solyc06g005220.2.1	Tomato	cytosol	26.51	39.9
Bra036649.1-P	Field mustard	cytosol	25.53	39.9
CDY03257	Canola	cytosol	25.53	39.9
Bra026882.1-P	Field mustard	cytosol	34.7	39.7
VIT_14s0081g00280.t01	Wine grape	mitochondrion	41.41	39.59
PGSC0003DMT400008757	Potato	cytosol	32.08	39.36
CDY06217	Canola	cytosol	18.82	39.25
CDY51169	Canola	cytosol	27.17	39.24
CDY09968	Canola	cytosol	18.82	39.12
VIT_14s0030g02280.t01	Wine grape	plastid	35.84	39.04
KRH08277	Soybean	plastid	36.17	38.98
KRH08628	Soybean	plastid	35.19	38.95
KRH09084	Soybean	plastid	32.57	38.94
Bra027636.1-P	Field mustard	cytosol	20.62	38.89
KRH08671	Soybean	cytosol, mitochondrion	35.19	38.88
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	33.39	38.86
AT1G62720.1	Thale cress	mitochondrion	30.77	38.76
KRH17148	Soybean	mitochondrion	34.53	38.72
CDY46909	Canola	mitochondrion	18.49	38.7
CDY33797	Canola	mitochondrion	32.41	38.67
AT3G22470.1	Thale cress	cytosol, mitochondrion	39.12	38.61
Bra031731.1-P	Field mustard	mitochondrion	32.08	38.58
Bra025516.1-P	Field mustard	cytosol, mitochondrion	29.95	38.36
CDY34870	Canola	mitochondrion	18.0	38.33
Bra027029.1-P	Field mustard	mitochondrion	15.22	38.27
CDY46394	Canola	mitochondrion	30.11	38.25
CDY48949	Canola	mitochondrion	29.95	38.05
KRH39066	Soybean	cytosol	34.53	38.02
KRH48615	Soybean	mitochondrion	33.88	37.98
Bra026957.1-P	Field mustard	mitochondrion	37.48	37.98
KRH09154	Soybean	mitochondrion	34.53	37.95
CDY16031	Canola	cytosol	19.31	37.94
PGSC0003DMT400008759	Potato	cytosol	19.8	37.93
AT1G63330.2	Thale cress	cytosol	34.7	37.92
Bra021192.1-P	Field mustard	plastid	31.1	37.7
KRH08607	Soybean	cytosol	34.53	37.61
CDY26565	Canola	mitochondrion	35.02	37.61
CDY00489	Canola	mitochondrion	36.01	37.54
AT5G16640.1	Thale cress	mitochondrion	30.93	37.5
Bra028267.1-P	Field mustard	mitochondrion	38.3	37.38
KRH08639	Soybean	mitochondrion, plastid	34.53	37.35
CDY16110	Canola	extracellular	25.04	37.32
CDY16002	Canola	cytosol	18.99	37.3
Solyc06g007280.2.1	Tomato	cytosol	15.55	37.25
AT1G12700.2	Thale cress	cytosol	37.64	37.22
AT1G12300.1	Thale cress	mitochondrion	38.79	37.21
KRH08625	Soybean	plastid	35.02	37.15
CDY31272	Canola	mitochondrion	34.53	37.15
PGSC0003DMT400025074	Potato	cytosol	33.55	37.14
CDX71969	Canola	cytosol	24.06	37.12
CDY08386	Canola	cytosol	27.0	37.08
Bra026836.1-P	Field mustard	cytosol, mitochondrion	29.79	37.07
Bra026958.1-P	Field mustard	mitochondrion	38.63	37.05
AT1G12620.1	Thale cress	cytosol, mitochondrion	37.64	37.04
PGSC0003DMT400056665	Potato	mitochondrion	35.68	37.01
PGSC0003DMT400025087	Potato	endoplasmic reticulum	29.95	36.97
CDY34969	Canola	mitochondrion	30.61	36.96
KRH40400	Soybean	plastid	34.86	36.92
Bra026971.1-P	Field mustard	mitochondrion	37.97	36.88
PGSC0003DMT400008760	Potato	mitochondrion	35.35	36.86
CDY26607	Canola	cytosol	27.5	36.76
PGSC0003DMT400052977	Potato	cytosol	23.4	36.76
CDY65983	Canola	mitochondrion	25.37	36.73
AT3G16710.1	Thale cress	mitochondrion	30.44	36.69
AT1G62680.2	Thale cress	plastid	32.9	36.68
KRH39050	Soybean	mitochondrion	31.91	36.65
Bra026884.1-P	Field mustard	cytosol	27.5	36.6
KRH41817	Soybean	mitochondrion	33.22	36.58
CDY68929	Canola	mitochondrion	36.33	36.57
CDY34375	Canola	mitochondrion	30.93	36.56
CDX69436	Canola	plastid	29.79	36.55
AT5G41170.1	Thale cress	mitochondrion	31.42	36.43
Bra016762.1-P	Field mustard	mitochondrion	36.17	36.41
CDY49646	Canola	mitochondrion	29.79	36.33
CDY33753	Canola	mitochondrion	26.35	36.26
AT1G63400.1	Thale cress	cytosol, plastid	34.21	36.22
KRH25652	Soybean	cytosol, golgi	31.91	36.11
PGSC0003DMT400025067	Potato	cytosol	27.99	35.92
Bra036651.1-P	Field mustard	mitochondrion	31.42	35.89
AT1G63080.3	Thale cress	mitochondrion	36.01	35.83
Solyc06g007810.1.1	Tomato	cytosol	15.71	35.82
Bra027026.1-P	Field mustard	mitochondrion	30.61	35.76
PGSC0003DMT400056663	Potato	plastid	34.37	35.71
CDY26593	Canola	cytosol	35.52	35.63
PGSC0003DMT400052971	Potato	mitochondrion	34.53	35.58
KRH09121	Soybean	mitochondrion	31.1	35.58
PGSC0003DMT400053185	Potato	mitochondrion	34.21	35.42
AT1G62914.1	Thale cress	mitochondrion	30.61	35.42
Bra027658.1-P	Field mustard	cytosol, mitochondrion	31.42	35.36
AT1G62590.1	Thale cress	mitochondrion	36.66	35.33
KRH31646	Soybean	cytosol	29.95	35.33
AT1G63150.1	Thale cress	mitochondrion	36.33	35.29
CDY46912	Canola	mitochondrion	28.48	35.22
CDY26588	Canola	extracellular	18.66	35.19
CDY35831	Canola	mitochondrion	29.62	35.15
AT1G62930.1	Thale cress	plastid	36.17	35.14
Bra006187.1-P	Field mustard	plastid	16.69	35.05
CDY16032	Canola	mitochondrion	23.4	35.05
AT1G62910.1	Thale cress	mitochondrion	36.17	34.97
Solyc06g007300.1.1	Tomato	extracellular	33.72	34.8
AT1G12775.1	Thale cress	cytosol, mitochondrion	36.66	34.78
CDY26589	Canola	cytosol	3.93	34.78
Bra026954.1-P	Field mustard	mitochondrion	36.99	34.77
Solyc06g007740.1.1	Tomato	cytosol	33.55	34.75
CDY25492	Canola	mitochondrion	27.82	34.62
CDY66358	Canola	mitochondrion	22.09	34.62
AT1G62670.1	Thale cress	mitochondrion	35.68	34.6
CDY34688	Canola	cytosol	20.46	34.53
AT1G63130.1	Thale cress	mitochondrion	35.52	34.44
CDY16026	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	30.93	34.43
AT1G64583.1	Thale cress	mitochondrion	28.81	34.38
KRH09095	Soybean	plastid	32.9	34.36
KRH09097	Soybean	plastid	32.57	34.13
AT1G64580.1	Thale cress	mitochondrion	28.97	33.84
AT1G06580.1	Thale cress	mitochondrion	27.66	33.8
CDY16003	Canola	cytosol, plastid	21.6	33.76
CDY31271	Canola	mitochondrion	26.84	33.74
Solyc04g080120.1.1	Tomato	extracellular	33.55	33.5
PGSC0003DMT400015293	Potato	mitochondrion	33.39	33.44
PGSC0003DMT400015298	Potato	mitochondrion	33.39	33.44
CDY16033	Canola	cytosol	8.18	33.33
KRH09082	Soybean	cytosol	22.26	33.33
PGSC0003DMT400053182	Potato	cytosol	32.57	33.22
AT1G63070.1	Thale cress	mitochondrion	32.08	33.22
CDY29251	Canola	mitochondrion	27.5	33.14
Bra027726.1-P	Field mustard	mitochondrion	25.37	32.91
AT4G26800.2	Thale cress	mitochondrion, plastid	27.66	32.88
Bra026401.1-P	Field mustard	plastid	28.48	32.52
CDX89301	Canola	plastid	28.48	32.52
PGSC0003DMT400053556	Potato	mitochondrion	24.39	32.46
VIT_14s0030g02260.t01	Wine grape	cytosol	23.4	32.28
CDY47835	Canola	mitochondrion	23.08	32.27
CDY25519	Canola	mitochondrion, plastid	33.22	31.77
CDY25522	Canola	mitochondrion, plastid	23.08	31.54
CDY28348	Canola	mitochondrion, plastid	30.77	31.44
KRH08599	Soybean	cytosol, plastid	32.41	29.6
KRH09085	Soybean	mitochondrion	32.73	28.41
CDX68680	Canola	mitochondrion	20.29	26.84
AT1G64100.2	Thale cress	cytosol	35.19	26.67
CDY66357	Canola	cytosol	15.88	25.59
CDY34370	Canola	cytosol	33.55	24.97
CDX81633	Canola	extracellular, golgi, plasma membrane	35.52	23.87
KRH39064	Soybean	cytosol	36.33	22.91
Bra027656.1-P	Field mustard	cytosol	34.53	22.42
CDY15970	Canola	cytosol	3.27	21.28
Bra016758.1-P	Field mustard	plastid	37.15	19.59
KRH12873	Soybean	cytosol	21.93	19.25
CDY31277	Canola	plastid	28.81	18.35
CDY34680	Canola	cytosol	21.28	14.25
CDY21063	Canola	plastid	2.29	2.55

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100793769	MapMan:35.1	EMBL:ACUP02003292	EnsemblPlantsGene:GLYMA_05G151600	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305
InterPro:IPR002885	InterPro:IPR011990	UniProt:K7KQD3	EnsemblPlants:KRH58843	ProteinID:KRH58843	ProteinID:KRH58843.1
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1594
InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000295F4A2	SEG:seg

Description

hypothetical protein

Coordinates

chr5:+:34518861..34523838

Molecular Weight (calculated)

68217.4 Da

IEP (calculated)

8.331

GRAVY (calculated)

0.149

Length

611 amino acids

Sequence
(BLAST)

001: MLRRIPSFSR FRLLHHMMGT FSHSLFIHSP SSSLSFSKHC HCSTNTDDTE SHSNGTQLLI SMRNLCWSGK LKNIDEALDL FQGMARMKPL PSVKDFTLLL
101: GAIVRLKHYT TAISLVKHMF SSLGIEADTI TLNIVINCLC RLKLVAFGFS VLGTMFKLGL EPTVMTLTTL INGLCVQGNV AQAVGLADHM EKMWYPLDVY
201: TYGVLINGLC KTGDTLAAVG WLRKMEERNW KPNVVVYSTI MDGLCKDGLV SEALNLCSEM NGKGVRPNLV TYACLIQGLC NFGRWKEAGS LLDEMMKMGM
301: RPDLQMLNIL VDAFCKEGKV MQAKSVIGFM ILTGEGPDVF TYNSLIHIYC LQNKMNEAMR VFHLMVSRGR LPDIVVFTSL IHGWCKDKNI NKAMHLLEEM
401: SKMGFVPDVA TWTTLIGGFC QAGRPLAAKE LFLNMHKYGQ VPNLQTCAVI LDGLCKENLL SEAVSLAKAM EKSNLDLNIV IYSILLDGMC SAGKLNAAWE
501: LFSSLPGKGL QINVYIYTIM IKGLCKQGSL DKAEDLLINM EENGCLPNNC TYNVFVQGLL TKKEIARSIK YLTIMRDKGF SVDAATTEFI INYLSTNEGD
601: TKIREFLFRK R

Best Arabidopsis Sequence Match ( AT1G12700.1 )
(BLAST)

001: MMIKRSITTN MKALRLIQPH LLKTGSLRTD LLCTISSFFS SCERDFSSIS NGNVCFRERL RSGIVDIKKD DAIALFQEMI RSRPLPSLVD FSRFFSAIAR
101: TKQFNLVLDF CKQLELNGIA HNIYTLNIMI NCFCRCCKTC FAYSVLGKVM KLGYEPDTTT FNTLIKGLFL EGKVSEAVVL VDRMVENGCQ PDVVTYNSIV
201: NGICRSGDTS LALDLLRKME ERNVKADVFT YSTIIDSLCR DGCIDAAISL FKEMETKGIK SSVVTYNSLV RGLCKAGKWN DGALLLKDMV SREIVPNVIT
301: FNVLLDVFVK EGKLQEANEL YKEMITRGIS PNIITYNTLM DGYCMQNRLS EANNMLDLMV RNKCSPDIVT FTSLIKGYCM VKRVDDGMKV FRNISKRGLV
401: ANAVTYSILV QGFCQSGKIK LAEELFQEMV SHGVLPDVMT YGILLDGLCD NGKLEKALEI FEDLQKSKMD LGIVMYTTII EGMCKGGKVE DAWNLFCSLP
501: CKGVKPNVMT YTVMISGLCK KGSLSEANIL LRKMEEDGNA PNDCTYNTLI RAHLRDGDLT ASAKLIEEMK SCGFSADASS IKMVIDMLLS GELDKSFLDM
601: LS

Arabidopsis Description

ATP binding;nucleic acid binding;helicases [Source:TAIR;Acc:AT1G12700]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.