CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX89318
CDX94304
CDX97358

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	CDX89318	AT4G26630.1	25387881
AT1G62670.1	CDX94304	AT4G26630.1	25387881
AT1G62670.1	CDX97358	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra027658.1-P	Field mustard	cytosol, mitochondrion	97.1	92.45
CDY25522	Canola	mitochondrion, plastid	66.54	76.96
CDY34688	Canola	cytosol	50.87	72.65
CDY26589	Canola	cytosol	8.12	60.87
AT1G63070.1	Thale cress	mitochondrion	69.44	60.85
AT1G63330.2	Thale cress	cytosol	65.76	60.82
AT1G62910.1	Thale cress	mitochondrion	73.11	59.81
AT1G63080.3	Thale cress	mitochondrion	70.79	59.61
AT1G62670.1	Thale cress	mitochondrion	71.95	59.05
AT1G63130.1	Thale cress	mitochondrion	71.57	58.73
AT1G62590.1	Thale cress	mitochondrion	71.95	58.68
AT1G62930.1	Thale cress	plastid	70.6	58.03
AT1G63400.1	Thale cress	cytosol, plastid	64.41	57.71
AT1G63150.1	Thale cress	mitochondrion	69.05	56.76
AT1G62914.1	Thale cress	mitochondrion	56.29	55.11
CDY16110	Canola	extracellular	42.36	53.41
CDY35831	Canola	mitochondrion	51.06	51.26
CDX71969	Canola	cytosol	38.88	50.76
CDY51169	Canola	cytosol	40.62	49.65
CDY26607	Canola	cytosol	43.71	49.45
CDY16033	Canola	cytosol	14.12	48.67
CDY26588	Canola	extracellular	30.17	48.15
CDY16031	Canola	cytosol	28.43	47.27
CDY39810	Canola	cytosol	35.2	46.55
CDY31272	Canola	mitochondrion	51.06	46.48
CDY03257	Canola	cytosol	35.01	46.29
CDY33753	Canola	mitochondrion	39.65	46.17
CDY46909	Canola	mitochondrion	25.92	45.89
CDY68929	Canola	mitochondrion	53.38	45.47
CDY00489	Canola	mitochondrion	51.45	45.39
CDY16002	Canola	cytosol	26.69	44.37
CDY26565	Canola	mitochondrion	48.36	43.94
CDY34870	Canola	mitochondrion	24.37	43.9
CDY09968	Canola	cytosol	24.95	43.88
CDX67634	Canola	cytosol	35.78	43.74
CDY06217	Canola	cytosol	24.76	43.69
CDY65983	Canola	mitochondrion	35.01	42.89
CDY08386	Canola	cytosol	36.75	42.7
CDY31271	Canola	mitochondrion	39.85	42.39
CDY33797	Canola	mitochondrion	41.97	42.38
CDY46912	Canola	mitochondrion	40.04	41.9
CDX68679	Canola	cytosol	9.28	41.74
CDY46394	Canola	mitochondrion	38.49	41.37
CDX69436	Canola	plastid	39.85	41.37
CDY34969	Canola	mitochondrion	40.43	41.3
CDY26593	Canola	cytosol	48.55	41.22
CDY25492	Canola	mitochondrion	38.68	40.73
CDY48949	Canola	mitochondrion	37.72	40.54
CDY49646	Canola	mitochondrion	39.27	40.52
CDY16003	Canola	cytosol, plastid	29.98	39.64
CDY66358	Canola	mitochondrion	29.79	39.49
CDY15970	Canola	cytosol	7.16	39.36
CDY16026	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	41.39	38.98
CDY47835	Canola	mitochondrion	32.3	38.22
CDY28348	Canola	mitochondrion, plastid	41.97	36.29
CDY16032	Canola	mitochondrion	28.43	36.03
VIT_12s0028g02320.t01	Wine grape	mitochondrion	32.5	35.22
CDY29251	Canola	mitochondrion	34.04	34.71
VIT_14s0081g00110.t01	Wine grape	cytosol	32.3	34.01
PGSC0003DMT400052977	Potato	cytosol	25.53	33.93
CDX89301	Canola	plastid	35.01	33.83
Solyc06g007280.2.1	Tomato	cytosol	16.63	33.73
CDY25519	Canola	mitochondrion, plastid	41.2	33.33
Solyc06g007810.1.1	Tomato	cytosol	16.83	32.46
Solyc06g005220.2.1	Tomato	cytosol	25.34	32.27
CDY66357	Canola	cytosol	23.6	32.19
VIT_14s0081g00120.t01	Wine grape	plastid	36.17	32.08
VIT_14s0081g00270.t01	Wine grape	plastid	35.98	32.07
PGSC0003DMT400008759	Potato	cytosol	19.34	31.35
KRH42744	Soybean	mitochondrion	36.94	31.26
KRH58843	Soybean	nucleus	36.56	30.93
PGSC0003DMT400025087	Potato	endoplasmic reticulum	29.59	30.91
Solyc06g007300.1.1	Tomato	extracellular	35.01	30.57
PGSC0003DMT400025067	Potato	cytosol	28.05	30.46
KRH70370	Soybean	cytosol	31.72	30.15
PGSC0003DMT400052971	Potato	mitochondrion	34.24	29.85
KRH49698	Soybean	cytosol	32.88	29.82
PGSC0003DMT400008760	Potato	mitochondrion	33.27	29.35
PGSC0003DMT400025074	Potato	cytosol	31.33	29.35
Solyc06g007740.1.1	Tomato	cytosol	33.46	29.32
PGSC0003DMT400008757	Potato	cytosol	28.05	29.12
CDX81633	Canola	extracellular, golgi, plasma membrane	50.68	28.82
PGSC0003DMT400053185	Potato	mitochondrion	32.69	28.64
KRH38755	Soybean	mitochondrion	32.69	28.45
PGSC0003DMT400056665	Potato	mitochondrion	32.3	28.35
VIT_14s0081g00280.t01	Wine grape	mitochondrion	35.01	28.33
KRH75063	Soybean	mitochondrion, plastid	33.08	28.31
KRH75045	Soybean	mitochondrion	32.5	28.14
KRH75048	Soybean	mitochondrion	33.08	28.12
PGSC0003DMT400056663	Potato	plastid	31.72	27.89
KRH09256	Soybean	mitochondrion	29.98	27.73
VIT_14s0030g02280.t01	Wine grape	plastid	29.79	27.45
VIT_14s0030g02260.t01	Wine grape	cytosol	23.02	26.86
CDY34370	Canola	cytosol	42.55	26.8
PGSC0003DMT400015293	Potato	mitochondrion	31.33	26.56
PGSC0003DMT400015298	Potato	mitochondrion	31.33	26.56
PGSC0003DMT400053182	Potato	cytosol	30.37	26.21
Solyc04g080120.1.1	Tomato	extracellular	30.95	26.14
CDX68680	Canola	mitochondrion	22.63	25.32
PGSC0003DMT400053556	Potato	mitochondrion	21.66	24.4
CDY31277	Canola	plastid	40.81	22.0
CDY34680	Canola	cytosol	33.46	18.97
CDY21063	Canola	plastid	2.51	2.37

Protein Annotations

EnsemblPlants:CDY34375	EnsemblPlantsGene:GSBRNA2T00056434001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PFAM:PF01535	PFAM:PF12854
PFAM:PF13041	PFscan:PS51375	ProteinID:CDY34375	ProteinID:CDY34375.1	SUPFAM:SSF81901	TIGRFAMs:TIGR00756
UniParc:UPI0004EE63F3	UniProt:A0A078H746	MapMan:35.1	:	:	:

Description

BnaA09g11170DBnaA09g11170D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H746]

Coordinates

chrLK032333:-:193671..195541

Molecular Weight (calculated)

58238.7 Da

IEP (calculated)

6.877

GRAVY (calculated)

-0.101

Length

517 amino acids

Sequence
(BLAST)

001: MRSILIAISL APKRFVHQNL HGTGNPLSYL PSFCCWTRAF SGRSDDDYRD GFLEDTKIED AVGLFSEMVK SRPLPSIIEF TMLGKMMKLG YDPNVVTLSS
101: LLNGYCRCNR ISEAVALVHQ MVEMGCQPNT ITFNTLIHGL FLHNKTSEAV ALVDRMVAKG CQPDLFTYGV VVNGLCKRGE IDLALDLIKK MEKLKIEADV
201: VIYSTVIDGL CKYKHVDDAL ELFSEMENKG VRGNVFTYNS LISCLCRYGR WSDAYRLLKE MIERKINPNV FTFSALIDSF AKEGKLSEAE SLYKEMIQSE
301: DCYPDVVTYN TLINGFCKSK RVEDGMQLFR EMSQRGLVGG TITYTTLIQG FFQARDCENA QKNFKQMVSC GVPPNIWTYN ILLDGFCDNG KLEEALGMCR
401: AGKVEDAWEL FCSLDLKGVK PDVRTYTIMI SGFCVKRLKQ EAVALFRKMK EDGPLPNGRT YNALIRAHLW DGEKAASAEL IKEMRSFGFS AEASTFGLVT
501: NMLHDGRLDK SFLDMLS

Best Arabidopsis Sequence Match ( AT1G63070.1 )
(BLAST)

001: MMRSVAVIGK KCLHRHTVLL KGNPRTTLCW ERSFAGASSD DCRENLSRKV LQDLKLDDAI GLFGDMVKSR PFPSIVEFSK LLSAIAKMNK FDLVISLGEQ
101: MQNLGISHNL YTYSIFINYF CRRSQLSLAL AILGKMMKLG YGPSIVTLNS LLNGFCHGNR ISEAVALVDQ MVEMGYQPDT VTFTTLVHGL FQHNKASEAV
201: ALVERMVVKG CQPDLVTYGA VINGLCKRGE PDLALNLLNK MEKGKIEADV VIYNTIIDGL CKYKHMDDAF DLFNKMETKG IKPDVFTYNP LISCLCNYGR
301: WSDASRLLSD MLEKNINPDL VFFNALIDAF VKEGKLVEAE KLYDEMVKSK HCFPDVVAYN TLIKGFCKYK RVEEGMEVFR EMSQRGLVGN TVTYTTLIHG
401: FFQARDCDNA QMVFKQMVSD GVHPDIMTYN ILLDGLCNNG NVETALVVFE YMQKRDMKLD IVTYTTMIEA LCKAGKVEDG WDLFCSLSLK GVKPNVVTYT
501: TMMSGFCRKG LKEEADALFV EMKEDGPLPN SGTYNTLIRA RLRDGDEAAS AELIKEMRSC GFAGDASTFG LVTNMLHDGR LDKSFLDMLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g63070, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9CAN6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.