CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
peroxisome 1
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra031731.1-P	Field mustard	mitochondrion	97.91	55.31
CDY16003	Canola	cytosol, plastid	62.37	45.78
CDY16032	Canola	mitochondrion	57.84	40.69
CDY16002	Canola	cytosol	42.86	39.55
CDY16031	Canola	cytosol	37.63	34.73
CDY26588	Canola	extracellular	37.98	33.64
CDX71969	Canola	cytosol	45.99	33.33
CDY35831	Canola	mitochondrion	58.88	32.82
CDY00489	Canola	mitochondrion	66.9	32.76
CDY31271	Canola	mitochondrion	54.01	31.89
CDY68929	Canola	mitochondrion	66.9	31.63
CDY33797	Canola	mitochondrion	55.75	31.25
CDY26565	Canola	mitochondrion	61.67	31.11
CDY26607	Canola	cytosol	49.13	30.85
CDY16110	Canola	extracellular	43.9	30.73
CDY31272	Canola	mitochondrion	60.28	30.46
CDY16026	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	57.84	30.24
CDY26593	Canola	cytosol	63.41	29.89
AT3G22470.1	Thale cress	cytosol, mitochondrion	61.32	28.43
AT1G12775.1	Thale cress	cytosol, mitochondrion	63.41	28.26
AT1G12300.1	Thale cress	mitochondrion	62.72	28.26
CDY51169	Canola	cytosol	41.46	28.13
AT1G12620.1	Thale cress	cytosol, mitochondrion	60.28	27.86
Solyc06g007280.2.1	Tomato	cytosol	23.69	26.67
CDY25522	Canola	mitochondrion, plastid	39.37	25.28
CDY34375	Canola	mitochondrion	43.9	24.37
CDY65983	Canola	mitochondrion	33.45	22.75
VIT_12s0028g02320.t01	Wine grape	mitochondrion	36.59	22.01
CDY33753	Canola	mitochondrion	33.8	21.85
CDX68680	Canola	mitochondrion	33.8	21.0
CDY25519	Canola	mitochondrion, plastid	45.3	20.34
CDY46912	Canola	mitochondrion	34.49	20.04
CDY34969	Canola	mitochondrion	35.19	19.96
CDY25492	Canola	mitochondrion	33.8	19.76
CDX81633	Canola	extracellular, golgi, plasma membrane	62.02	19.58
CDX69436	Canola	plastid	33.1	19.08
CDY29251	Canola	mitochondrion	33.45	18.93
CDY03257	Canola	cytosol	25.78	18.93
CDY39810	Canola	cytosol	25.78	18.93
CDX67634	Canola	cytosol	27.53	18.68
PGSC0003DMT400025074	Potato	cytosol	35.54	18.48
CDY66358	Canola	mitochondrion	24.74	18.21
KRH70370	Soybean	cytosol	34.49	18.2
KRH42744	Soybean	mitochondrion	38.68	18.17
CDY49646	Canola	mitochondrion	31.71	18.16
CDY46909	Canola	mitochondrion	18.47	18.15
VIT_14s0081g00270.t01	Wine grape	plastid	36.59	18.1
CDY48949	Canola	mitochondrion	30.31	18.09
CDY46394	Canola	mitochondrion	30.31	18.09
KRH58843	Soybean	nucleus	38.33	18.0
PGSC0003DMT400008760	Potato	mitochondrion	36.59	17.92
KRH75045	Soybean	mitochondrion	36.59	17.59
CDX89301	Canola	plastid	32.75	17.57
Solyc06g007300.1.1	Tomato	extracellular	36.24	17.57
KRH75063	Soybean	mitochondrion, plastid	36.93	17.55
PGSC0003DMT400056663	Potato	plastid	35.89	17.52
PGSC0003DMT400056665	Potato	mitochondrion	35.89	17.49
KRH49698	Soybean	cytosol	34.49	17.37
Solyc06g005220.2.1	Tomato	cytosol	24.39	17.24
PGSC0003DMT400053556	Potato	mitochondrion	27.53	17.21
Solyc06g007740.1.1	Tomato	cytosol	35.19	17.12
PGSC0003DMT400052971	Potato	mitochondrion	35.19	17.03
KRH75048	Soybean	mitochondrion	35.89	16.94
CDY28348	Canola	mitochondrion, plastid	35.19	16.89
CDY34688	Canola	cytosol	21.25	16.85
VIT_14s0081g00120.t01	Wine grape	plastid	34.15	16.81
CDY47835	Canola	mitochondrion	25.44	16.7
VIT_14s0030g02280.t01	Wine grape	plastid	32.4	16.58
PGSC0003DMT400008757	Potato	cytosol	28.57	16.47
CDY08386	Canola	cytosol	25.44	16.4
PGSC0003DMT400053185	Potato	mitochondrion	33.45	16.27
KRH38755	Soybean	mitochondrion	33.45	16.16
PGSC0003DMT400025087	Potato	endoplasmic reticulum	27.18	15.76
CDY34370	Canola	cytosol	44.6	15.59
PGSC0003DMT400015293	Potato	mitochondrion	32.75	15.41
PGSC0003DMT400015298	Potato	mitochondrion	32.75	15.41
PGSC0003DMT400053182	Potato	cytosol	31.71	15.19
PGSC0003DMT400025067	Potato	cytosol	25.09	15.13
KRH09256	Soybean	mitochondrion	29.27	15.03
VIT_14s0081g00280.t01	Wine grape	mitochondrion	33.45	15.02
CDY06217	Canola	cytosol	15.33	15.02
CDY09968	Canola	cytosol	15.33	14.97
Solyc04g080120.1.1	Tomato	extracellular	31.36	14.71
VIT_14s0081g00110.t01	Wine grape	cytosol	24.74	14.46
PGSC0003DMT400052977	Potato	cytosol	18.47	13.62
CDY31277	Canola	plastid	43.55	13.03
CDY66357	Canola	cytosol	12.2	9.23
PGSC0003DMT400008759	Potato	cytosol	8.01	7.21
VIT_14s0030g02260.t01	Wine grape	cytosol	9.06	5.87
Solyc06g007810.1.1	Tomato	cytosol	4.88	5.22
CDY34680	Canola	cytosol	16.38	5.15
CDY21063	Canola	plastid	9.06	4.74
CDY26589	Canola	cytosol	1.05	4.35
CDX68679	Canola	cytosol	1.39	3.48
CDY15970	Canola	cytosol	1.05	3.19
CDY16033	Canola	cytosol	1.39	2.67

Protein Annotations

EnsemblPlants:CDY34870	EnsemblPlantsGene:GSBRNA2T00057433001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR44149	PANTHER:PTHR44149:SF1
PFAM:PF13041	PFscan:PS51375	ProteinID:CDY34870	ProteinID:CDY34870.1	SEG:seg	TIGRFAMs:TIGR00756
UniParc:UPI0004EDE13F	UniProt:A0A078H8Q3	MapMan:35.1	:	:	:

Description

BnaA09g47960DBnaA09g47960D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H8Q3]

Coordinates

chrLK032342:-:257162..258323

Molecular Weight (calculated)

31717.9 Da

IEP (calculated)

9.088

GRAVY (calculated)

0.043

Length

287 amino acids

Sequence
(BLAST)

001: MKMIGRLIPF HRKAFQPRIA LFLSSSAFSV LINVSYNERL GSGLVDIKKD DAVALFQTMI QSRPLPSLVD FSRLFSGIAR TKHKLGFAFS VMGKMLKLGF
101: EPGSHISNTL VNGLCLKDKV SQAVDLIDRM VDNGCQPDGA TYGPVLNRMC KSGNTASALD LLRKMEDRKI KLDAVTYNII IDSLCKDGSL DDALSLFNEM
201: ETKGIKPNVF TYNSLIRGFC SAGRWDDGAP LLRDMITRGI TPTVITFNSL IDSFILTQGC DPDILTLDIL INGYCKAKRS GCRYSHL

Best Arabidopsis Sequence Match ( AT1G12300.1 )
(BLAST)

001: MVKLMIRRLS SQVSKFVQPR LLETGTLRIA LINCPNELSF CCERGFSAFS DRNLSYRERL RSGLVDIKAD DAIDLFRDMI HSRPLPTVID FSRLFSAIAK
101: TKQYDLVLAL CKQMELKGIA HNLYTLSIMI NCFCRCRKLC LAFSAMGKII KLGYEPNTIT FSTLINGLCL EGRVSEALEL VDRMVEMGHK PDLITINTLV
201: NGLCLSGKEA EAMLLIDKMV EYGCQPNAVT YGPVLNVMCK SGQTALAMEL LRKMEERNIK LDAVKYSIII DGLCKHGSLD NAFNLFNEME MKGITTNIIT
301: YNILIGGFCN AGRWDDGAKL LRDMIKRKIN PNVVTFSVLI DSFVKEGKLR EAEELHKEMI HRGIAPDTIT YTSLIDGFCK ENHLDKANQM VDLMVSKGCD
401: PNIRTFNILI NGYCKANRID DGLELFRKMS LRGVVADTVT YNTLIQGFCE LGKLNVAKEL FQEMVSRKVP PNIVTYKILL DGLCDNGESE KALEIFEKIE
501: KSKMELDIGI YNIIIHGMCN ASKVDDAWDL FCSLPLKGVK PGVKTYNIMI GGLCKKGPLS EAELLFRKME EDGHAPDGWT YNILIRAHLG DGDATKSVKL
601: IEELKRCGFS VDASTIKMVI DMLSDGRLKK SFLDMLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g12300, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q0WKV3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.