CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

cytosol 3
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, plastid
BaCelLo:	cytosol
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER91265
OQU91413

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	EER91265	AT4G26630.1	25387881
AT1G62670.1	OQU91413	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU80148	Sorghum	mitochondrion	90.01	90.51
KXG19780	Sorghum	cytosol	65.8	81.39
OQU82836	Sorghum	cytosol	67.44	80.56
OQU82833	Sorghum	cytosol	44.73	72.99
OQU82832	Sorghum	cytosol	28.18	72.03
OQU82831	Sorghum	cytosol	59.78	71.29
OQU82823	Sorghum	cytosol	77.29	70.89
OQU82827	Sorghum	cytosol	77.29	70.89
EES07882	Sorghum	cytosol	74.01	69.63
EES09203	Sorghum	cytosol	67.03	61.4
OQU82856	Sorghum	cytosol	54.58	53.06
OQU82834	Sorghum	cytosol	69.77	52.96
Os10t0495200-01	Rice	mitochondrion	55.13	51.53
Os10t0497300-01	Rice	mitochondrion	55.68	51.26
Os10t0501700-00	Rice	cytosol	30.92	49.78
Os10t0497366-00	Rice	mitochondrion	26.95	49.13
Os10t0495100-01	Rice	cytosol, mitochondrion	29.55	46.85
Os08t0110200-01	Rice	mitochondrion	51.03	46.74
Os08t0107800-01	Rice	mitochondrion	38.99	45.67
Os08t0248400-01	Rice	mitochondrion	27.22	45.23
OQU88594	Sorghum	cytosol	32.01	44.83
Os10t0499500-01	Rice	mitochondrion	30.37	43.87
KXG35774	Sorghum	cytosol, mitochondrion	28.04	43.34
EER95949	Sorghum	mitochondrion	38.44	42.38
KXG34536	Sorghum	mitochondrion	32.56	41.61
KXG28799	Sorghum	plastid	42.41	40.79
Os10t0497432-01	Rice	mitochondrion	13.68	37.59
Os08t0107700-01	Rice	cytosol, mitochondrion	19.15	37.43
KRH39057	Soybean	cytosol	22.57	33.2
KRH39054	Soybean	cytosol	22.43	33.0
KRH39072	Soybean	cytosol	22.3	32.86
KRH39074	Soybean	cytosol	22.16	32.6
KRH39004	Soybean	cytosol	22.02	32.39
KRH40513	Soybean	plastid	15.46	32.19
KRH39112	Soybean	cytosol	21.61	31.79
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	21.2	30.69
Bra027636.1-P	Field mustard	cytosol	13.54	30.56
Bra036649.1-P	Field mustard	cytosol	16.28	30.43
KRH48615	Soybean	mitochondrion	22.57	30.28
AT1G63330.2	Thale cress	cytosol	22.98	30.05
VIT_12s0028g02320.t01	Wine grape	mitochondrion	19.56	29.98
Bra026882.1-P	Field mustard	cytosol	21.89	29.96
KRH39066	Soybean	cytosol	22.71	29.91
KRH08636	Soybean	cytosol	21.34	29.89
VIT_14s0081g00120.t01	Wine grape	plastid	23.53	29.5
VIT_14s0081g00110.t01	Wine grape	cytosol	19.56	29.12
Solyc06g007810.1.1	Tomato	cytosol	10.67	29.1
KRH41817	Soybean	mitochondrion	22.02	29.01
KRH09084	Soybean	plastid	20.25	28.96
VIT_14s0081g00270.t01	Wine grape	plastid	22.85	28.79
PGSC0003DMT400008759	Potato	cytosol	12.45	28.53
KRH08639	Soybean	mitochondrion, plastid	22.02	28.5
Bra027029.1-P	Field mustard	mitochondrion	9.44	28.4
KRH08671	Soybean	cytosol, mitochondrion	21.48	28.39
Bra021192.1-P	Field mustard	plastid	19.56	28.37
KRH08607	Soybean	cytosol	21.75	28.34
KRH08277	Soybean	plastid	21.89	28.22
KRH31646	Soybean	cytosol	19.97	28.19
KRH17148	Soybean	mitochondrion	20.93	28.07
AT1G62720.1	Thale cress	mitochondrion	18.6	28.04
Bra036651.1-P	Field mustard	mitochondrion	20.52	28.04
KRH39050	Soybean	mitochondrion	20.38	28.01
KRH40400	Soybean	plastid	22.02	27.9
PGSC0003DMT400052977	Potato	cytosol	14.77	27.76
AT1G64580.1	Thale cress	mitochondrion	19.84	27.72
AT5G16640.1	Thale cress	mitochondrion	19.02	27.58
Bra026884.1-P	Field mustard	cytosol	17.24	27.45
KRH09082	Soybean	cytosol	15.32	27.45
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	19.7	27.43
AT1G62680.2	Thale cress	plastid	20.52	27.37
KRH08628	Soybean	plastid	20.66	27.36
AT1G62930.1	Thale cress	plastid	23.53	27.34
PGSC0003DMT400008757	Potato	cytosol	18.6	27.31
AT3G16710.1	Thale cress	mitochondrion	18.88	27.22
KRH09154	Soybean	mitochondrion	20.66	27.16
Bra027026.1-P	Field mustard	mitochondrion	19.43	27.15
Bra006187.1-P	Field mustard	plastid	10.81	27.15
AT1G62670.1	Thale cress	mitochondrion	23.39	27.14
AT1G63080.3	Thale cress	mitochondrion	22.71	27.04
Bra016762.1-P	Field mustard	mitochondrion	22.43	27.02
AT1G62590.1	Thale cress	mitochondrion	23.39	26.97
KRH08625	Soybean	plastid	21.2	26.91
Bra026958.1-P	Field mustard	mitochondrion	23.39	26.84
AT1G63130.1	Thale cress	mitochondrion	23.12	26.83
AT1G12620.1	Thale cress	cytosol, mitochondrion	22.71	26.73
AT3G22470.1	Thale cress	cytosol, mitochondrion	22.57	26.66
Bra025516.1-P	Field mustard	cytosol, mitochondrion	17.37	26.62
KRH09121	Soybean	mitochondrion	19.43	26.59
AT1G63400.1	Thale cress	cytosol, plastid	20.93	26.52
VIT_14s0081g00280.t01	Wine grape	mitochondrion	23.12	26.45
Bra026971.1-P	Field mustard	mitochondrion	22.71	26.39
KRH25652	Soybean	cytosol, golgi	19.43	26.3
AT1G63070.1	Thale cress	mitochondrion	21.2	26.27
AT1G63150.1	Thale cress	mitochondrion	22.57	26.23
AT1G64583.1	Thale cress	mitochondrion	18.33	26.17
CDX68679	Canola	cytosol	4.1	26.09
PGSC0003DMT400015293	Potato	mitochondrion	21.75	26.07
PGSC0003DMT400015298	Potato	mitochondrion	21.75	26.07
AT1G12300.1	Thale cress	mitochondrion	22.71	26.06
VIT_14s0030g02280.t01	Wine grape	plastid	19.97	26.02
Bra026954.1-P	Field mustard	mitochondrion	23.12	26.0
AT1G12775.1	Thale cress	cytosol, mitochondrion	22.85	25.93
KRH09097	Soybean	plastid	20.66	25.9
KRH09095	Soybean	plastid	20.66	25.81
AT1G06580.1	Thale cress	mitochondrion	17.65	25.8
AT1G62914.1	Thale cress	mitochondrion	18.6	25.76
Solyc06g005220.2.1	Tomato	cytosol	14.23	25.62
AT1G62910.1	Thale cress	mitochondrion	22.02	25.47
Solyc06g007740.1.1	Tomato	cytosol	20.52	25.42
Bra026836.1-P	Field mustard	cytosol, mitochondrion	16.96	25.25
PGSC0003DMT400025074	Potato	cytosol	19.02	25.18
Solyc04g080120.1.1	Tomato	extracellular	21.07	25.16
Solyc06g007280.2.1	Tomato	cytosol	8.76	25.1
Bra028267.1-P	Field mustard	mitochondrion	21.48	25.08
PGSC0003DMT400056665	Potato	mitochondrion	20.11	24.96
AT5G41170.1	Thale cress	mitochondrion	17.78	24.67
Solyc06g007300.1.1	Tomato	extracellular	19.97	24.66
Bra031731.1-P	Field mustard	mitochondrion	17.1	24.61
Bra026957.1-P	Field mustard	mitochondrion	20.25	24.54
Bra027658.1-P	Field mustard	cytosol, mitochondrion	18.19	24.49
PGSC0003DMT400056663	Potato	plastid	19.43	24.15
AT1G12700.2	Thale cress	cytosol	20.38	24.11
PGSC0003DMT400008760	Potato	mitochondrion	19.29	24.06
PGSC0003DMT400052971	Potato	mitochondrion	19.43	23.95
PGSC0003DMT400053185	Potato	mitochondrion	19.29	23.9
PGSC0003DMT400025087	Potato	endoplasmic reticulum	16.01	23.64
PGSC0003DMT400053182	Potato	cytosol	19.02	23.21
Bra026401.1-P	Field mustard	plastid	16.96	23.18
VIT_14s0030g02260.t01	Wine grape	cytosol	13.95	23.02
Bra027726.1-P	Field mustard	mitochondrion	14.77	22.93
AT4G26800.2	Thale cress	mitochondrion, plastid	16.01	22.76
KRH08599	Soybean	cytosol, plastid	20.79	22.72
PGSC0003DMT400025067	Potato	cytosol	14.77	22.69
OQU88581	Sorghum	cytosol	32.83	22.08
PGSC0003DMT400053556	Potato	mitochondrion	13.54	21.57
AT1G64100.2	Thale cress	cytosol	22.98	20.84
KRH09085	Soybean	mitochondrion	19.97	20.74
Bra027656.1-P	Field mustard	cytosol	26.13	20.3
KRH39064	Soybean	cytosol	23.53	17.75
KRH12873	Soybean	cytosol	16.28	17.1
Bra016758.1-P	Field mustard	plastid	22.16	13.98

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A1B6PPU4	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	EnsemblPlants:KXG27690	ProteinID:KXG27690	ProteinID:KXG27690.2	PFAM:PF01535
PFAM:PF12854	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF302
InterPro:Pentatricopeptide_repeat	EnsemblPlantsGene:SORBI_3005G028300	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000B8B9F7A

Description

hypothetical protein

Coordinates

chr5:-:2530040..2533912

Molecular Weight (calculated)

82318.3 Da

IEP (calculated)

6.591

GRAVY (calculated)

0.025

Length

731 amino acids

Sequence
(BLAST)

001: SGSLGLNDAL KLFDEMLTHA RPASVRAFNQ LLTAVSRARC SSASELVVSL FNRMIRECSI KVAPSSFTYT ILIGCFCRMG RLKHGFAAFG LILKTGWRVN
101: DTVIFSQLLK GLCDAKRVDE ATDILLRRMP EFGCTPDVFS YSILLKGFCN EKRAEEALEL LSMMADDGDG SHTPNVVTYT TVIDGLCKAQ MVDRAKGVFQ
201: HMIDKGVRPN NHTYTCLIHG YLSIGKWKEV VQMLQEMSTH GLQPDCYIYA VLLDYLCKNG RCTEARNIFD SVIRKGIKPN VTIYGILLHG YATEGSLSEM
301: HSFLDLMVGN GVSPDHHIFN IMFCAYAKKA MIDEAMHIFD KMRQQRLSPN IVTYGALIDA LCKLGRVDDA VLKFNQMIDE GMTPDIFVFS SLVYGLCTVD
401: KWEKAEELFF EVLDQGIRLD TVFFNTLMCN LCREGRVMEA QRLIDLMLRV GVRPDVISYN TLVDGHCLTG RIDEAAKLLD VIVSIGLKPD KVTYNTLLHG
501: YCKARRIDDA YSLFREMLMK GLTPDVVTYN TILHGLFQTG RFSEAKELYL SMINSRTQMN IYTYNIIING LCKNNFVDEA FKMFHSLCSK DLQLDIFTAN
601: IMIGALLKGG RKEDAMDLFA TISAYGLVPD VETYCLIAEN LIKEGSLEEL DELFSAMEEN GTAPNSRMLN ALVRWLLHRG DINRAGAYLS KLDEKNFSLE
701: ASTTSMLISI YSRGEYQQLA KSLPEKYHFP Q

Best Arabidopsis Sequence Match ( AT1G62670.1 )
(BLAST)

001: MRISFAIAST AKRFVHRSLV VRGNAATVSP SFSFFWRRAF SGKTSYDYRE KLSRNGLSEL KLDDAVALFG EMVKSRPFPS IIEFSKLLSA IAKMNKFDVV
101: ISLGEQMQNL GIPHNHYTYS ILINCFCRRS QLPLALAVLG KMMKLGYEPN IVTLSSLLNG YCHSKRISEA VALVDQMFVT GYQPNTVTFN TLIHGLFLHN
201: KASEAMALID RMVAKGCQPD LVTYGVVVNG LCKRGDTDLA FNLLNKMEQG KLEPGVLIYN TIIDGLCKYK HMDDALNLFK EMETKGIRPN VVTYSSLISC
301: LCNYGRWSDA SRLLSDMIER KINPDVFTFS ALIDAFVKEG KLVEAEKLYD EMVKRSIDPS IVTYSSLING FCMHDRLDEA KQMFEFMVSK HCFPDVVTYN
401: TLIKGFCKYK RVEEGMEVFR EMSQRGLVGN TVTYNILIQG LFQAGDCDMA QEIFKEMVSD GVPPNIMTYN TLLDGLCKNG KLEKAMVVFE YLQRSKMEPT
501: IYTYNIMIEG MCKAGKVEDG WDLFCNLSLK GVKPDVVAYN TMISGFCRKG SKEEADALFK EMKEDGTLPN SGCYNTLIRA RLRDGDREAS AELIKEMRSC
601: GFAGDASTIG LVTNMLHDGR LDKSFLDMLS

Arabidopsis Description

RPF2Pentatricopeptide repeat-containing protein At1g62670, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SXD1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.