Factsheet for PGSC0003DMT400012246

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g078720.2.1	Tomato	mitochondrion	92.35	93.45
PGSC0003DMT400012247	Potato	mitochondrion	27.06	23.59
TraesCS7D01G178900.1	Wheat	cytosol	14.12	19.67
PGSC0003DMT400012249	Potato	mitochondrion	24.12	19.43
TraesCS2B01G531300.1	Wheat	plastid	18.82	18.18
TraesCS6B01G346700.1	Wheat	mitochondrion	22.35	17.67
TraesCS6A01G316200.1	Wheat	mitochondrion	22.35	17.67
TraesCS6D01G295500.1	Wheat	mitochondrion	22.35	17.59
TraesCS7B01G083300.1	Wheat	cytosol	13.53	17.29
OQU85385	Sorghum	mitochondrion	22.35	17.19
TraesCS7B01G082900.1	Wheat	plastid	20.0	17.0
Zm00001d052194_P001	Maize	mitochondrion	21.76	16.97
EER89430	Sorghum	plastid	22.35	16.74
TraesCS7B01G083500.1	Wheat	mitochondrion	22.94	16.74
GSMUA_Achr10P...	Banana	mitochondrion	21.18	16.67
TraesCS7A01G177600.1	Wheat	plastid	20.59	16.28
TraesCS7D01G179200.1	Wheat	cytosol, plastid	20.0	16.27
TraesCS7D01G179600.1	Wheat	mitochondrion	22.35	16.24
HORVU7Hr1G036500.7	Barley	plastid	19.41	16.18
TraesCS7A01G232500.1	Wheat	plastid	19.41	16.02
TraesCS7D01G179400.1	Wheat	plastid	19.41	15.71
TraesCS7A01G236700.1	Wheat	plastid	19.41	15.57
TraesCS7D01G179300.1	Wheat	plastid	19.41	15.57
TraesCS7B01G083100.1	Wheat	plastid	19.41	15.49
TraesCS7B01G083200.2	Wheat	plastid	20.0	15.38
TraesCS7D01G179500.1	Wheat	plastid	19.41	15.35
OQU76071	Sorghum	plastid	18.24	15.35
TraesCS7B01G083400.1	Wheat	plastid	18.82	15.02
TraesCS7D01G179000.1	Wheat	plastid	18.82	15.02
TraesCS7D01G179100.1	Wheat	plastid	18.82	14.88
EER89431	Sorghum	plastid	18.82	14.75
Os02t0758000-01	Rice	plastid	18.82	14.55
TraesCS7D01G232600.1	Wheat	plastid	17.65	14.35
TraesCS7A01G177700.1	Wheat	cytosol, plastid	18.24	14.35
TraesCS7A01G177500.1	Wheat	cytosol, plastid	18.24	14.35
HORVU7Hr1G036470.3	Barley	cytosol, nucleus	20.0	14.05
HORVU7Hr1G036570.2	Barley	cytosol	18.24	14.03
OQU75930	Sorghum	plastid	18.24	13.9
OQU75612	Sorghum	plastid	18.24	13.9
HORVU6Hr1G077710.3	Barley	cytosol	21.76	13.55
Zm00001d044874_P001	Maize	cytosol, plastid	15.88	12.98
HORVU7Hr1G036540.3	Barley	mitochondrion, nucleus, plastid	18.82	12.4
TraesCS7B01G130900.1	Wheat	plastid	11.76	12.35
TraesCS7A01G177800.1	Wheat	nucleus	15.29	11.3
Os06t0219500-00	Rice	mitochondrion	18.82	10.36
TraesCS5B01G123900.1	Wheat	plastid	13.53	9.62
KXG19616	Sorghum	plastid	14.71	9.29

Protein Annotations

EnsemblPlants:PGSC0003DMT400012246	EnsemblPlantsGene:PGSC0003DMG400004806	EntrezGene:102599517	Gene3D:2.60.40.790	InterPro:A-crystallin/Hsp20_dom	InterPro:HSP20
InterPro:HSP20-like_chaperone	InterPro:IPR002068	InterPro:IPR008978	PANTHER:PTHR11527	PANTHER:PTHR11527:SF95	PFAM:PF00011
PFscan:PS01031	PGSC:PGSC0003DMG400004806	RefSeq:XP_006355460.1	SEG:seg	SUPFAM:SSF49764	UniParc:UPI000296888D
UniProt:M1A0Z5	MapMan:19.1.8.7	:	:	:	:

Description

LMW heat shock protein [Source:PGSC_GENE;Acc:PGSC0003DMG400004806]

Coordinates

chr8:+:52390914..52392554

Molecular Weight (calculated)

18459.1 Da

IEP (calculated)

4.739

GRAVY (calculated)

-0.318

Length

170 amino acids

Sequence
(BLAST)

001: MSMALSIRKA TGASTLFKLL SSKSQITTAA PSMTRFFSSI TTSDSNSLSN EQKNSTEPIL VTGAPQEFKM ENPFQSVGPK EVLEVDTLKD GILVRVAMPG
101: VGEDGIKVWL ENNTVYFTGK GEIEVESEES GRKYGGSLEF STDCCKAEKV EAQMKNGILR MVIKGEMGQD

Best Arabidopsis Sequence Match ( AT5G47590.1 )
(BLAST)

001: MGETKADFRD MSRIPKVREG FYATNNQFQK AGPKGFVQVK VLENDNLYVR VDLPGVPDDA VRYRVDAVRQ KVVFFSGETL NNGKEGVRQY SGTAGLGCDC
101: CEITGVDAKM KDGVLRMILT RVKVVSKAQD NNNNKCTLTV PPFTGQSGIR LEDHPCLVSG RKGALIGVTK AGGGAHFAVD MPGVSPDDVE VYADEKEIRF
201: KAEIKDVYEH DESGRTYLGS VQSPFPALIS NNTIAWDAEF GVLRIAVIPP DDMTTINNKR NPIE

Arabidopsis Description

Heat shock protein HSP20/alpha crystallin family [Source:UniProtKB/TrEMBL;Acc:Q9FGJ8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.