CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
peroxisome 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH16000	Soybean	cytosol, peroxisome	69.43	81.25
KRH57460	Soybean	nucleus	89.13	72.78
KRH28148	Soybean	peroxisome	80.66	65.77
Solyc08g078390.2.1	Tomato	nucleus, peroxisome, unclear	76.06	62.2
PGSC0003DMT400012322	Potato	peroxisome	75.87	62.05
Bra040093.1-P	Field mustard	peroxisome	74.59	60.99
CDY42938	Canola	peroxisome	74.59	60.99
CDY59471	Canola	peroxisome	74.4	60.84
GSMUA_Achr7P07440_001	Banana	peroxisome	74.59	60.81
KRH77335	Soybean	peroxisome	80.85	60.22
AT4G16760.1	Thale cress	peroxisome	73.48	60.09
AT2G35690.1	Thale cress	peroxisome	73.3	59.94
Solyc08g078400.2.1	Tomato	unclear	70.53	59.01
CDX79618	Canola	peroxisome	71.82	58.73
CDX84603	Canola	peroxisome	71.64	58.58
Bra023025.1-P	Field mustard	peroxisome	71.64	58.58
PGSC0003DMT400012318	Potato	peroxisome	70.53	57.68
Zm00001d045251_P001	Maize	peroxisome	70.72	57.57
KXG19087	Sorghum	peroxisome	70.53	57.34
EER87896	Sorghum	peroxisome	70.17	57.12
TraesCS7D01G004400.1	Wheat	peroxisome	70.17	56.95
TraesCS4A01G494700.1	Wheat	golgi, peroxisome	69.98	56.89
TraesCS7A01G003900.1	Wheat	peroxisome, unclear	69.8	56.74
Os06t0103500-01	Rice	peroxisome	69.8	56.65
Zm00001d045606_P002	Maize	peroxisome	69.61	54.31
HORVU2Hr1G031180.5	Barley	peroxisome	22.65	41.41
VIT_00s0389g00020.t01	Wine grape	nucleus, peroxisome	59.67	37.5
KRH59378	Soybean	nucleus	25.97	20.86
KRH25680	Soybean	nucleus	24.68	19.85
KRH55840	Soybean	nucleus	24.31	19.56

Protein Annotations

KEGG:00071+1.3.3.6	KEGG:00592+1.3.3.6	Gene3D:1.10.540.10	Gene3D:1.20.140.10	MapMan:11.7.1.8	Gene3D:2.40.110.10
MapMan:5.7.3.2.1	EMBL:ACUP02010385	InterPro:Acyl-CoA_ox_N	InterPro:Acyl-CoA_oxidase_C	InterPro:AcylCoA_DH/ox_N_sf	InterPro:AcylCoA_DH/oxidase_NM_dom
InterPro:AcylCo_DH-like_C	EnsemblPlantsGene:GLYMA_17G144000	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003995
GO:GO:0003997	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005777	GO:GO:0006629	GO:GO:0006635	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016627	GO:GO:0033539	GO:GO:0050660	GO:GO:0055114	UniProt:I1MV38
InterPro:IPR037069	EnsemblPlants:KRH04170	ProteinID:KRH04170	ProteinID:KRH04170.1	PFAM:PF01756	PFAM:PF14749
PANTHER:PTHR10909	PANTHER:PTHR10909:SF369	MetaCyc:PWY-5136	MetaCyc:PWY-6837	MetaCyc:PWY-6920	MetaCyc:PWY-7007
MetaCyc:PWY-7288	MetaCyc:PWY-7291	MetaCyc:PWY-7337	MetaCyc:PWY-7338	MetaCyc:PWY-7340	MetaCyc:PWY-735
MetaCyc:PWY-7574	MetaCyc:PWY-7606	MetaCyc:PWY-7726	MetaCyc:PWY-7854	MetaCyc:PWY-7858	SUPFAM:SSF47203
SUPFAM:SSF56645	UniParc:UPI000295B064	:	:	:	:

Description

hypothetical protein

Coordinates

chr17:-:11759547..11765498

Molecular Weight (calculated)

60558.8 Da

IEP (calculated)

8.335

GRAVY (calculated)

-0.199

Length

543 amino acids

Sequence
(BLAST)

001: MEDIVDHLAF ERNKTQFDVD EMKIAGSLHA FEVSDKMARL VASDPAFRKD DRVVLDRKAL FMNTLRKTAY AWKRIIELRL SEEEAAMLRS FVDQPAFTDL
101: HWGMFVPTIK GQGTEEQQQK WLPLAHKMQI IGCYAQTELG HGSNVQGLEK TATFDPKTDE FVIHSPTLTS SKWWPGGLGK VSTHAVRSLD DHLPLPGITV
201: GDIGMKFGNG AYNSMDNGVL RFDCVWIPRN QMLMRVSQVT REGKYVQSSV PRQLVYGTMV NVRQTIVSDA SIALSRAVCI ATRYSAVRRQ FGSKKGGLET
301: QVIDYKTQQA RLIPLLASAY AFRFVGEWLK WLYMDVMKRL QTSDFSTLPE AHACTAGLKS FTTSATADGI EECRKLCGGH GYLCSSGLPE LFAVYIPSCT
401: YEGDNTVLLL QVARHLIKTI SQLGSRKKPV GTTSYIGRVE QLMQYHSDFQ KAEDGLKPNA VLGAFEARAA KKVIGCAQNL SKFTNPEEGF QEFSVDLVEA
501: AVAHCQLIVV SKGARSRNNF VMHSKITYNC TVDPGESYEL LSI

Best Arabidopsis Sequence Match ( AT4G16760.1 )
(BLAST)

001: MEGIDHLADE RNKAEFDVED MKIVWAGSRH AFEVSDRIAR LVASDPVFEK SNRARLSRKE LFKSTLRKCA HAFKRIIELR LNEEEAGRLR HFIDQPAYVD
101: LHWGMFVPAI KGQGTEEQQK KWLSLANKMQ IIGCYAQTEL GHGSNVQGLE TTATFDPKTD EFVIHTPTQT ASKWWPGGLG KVSTHAVVYA RLITNGKDYG
201: IHGFIVQLRS LEDHSPLPNI TVGDIGTKMG NGAYNSMDNG FLMFDHVRIP RDQMLMRLSK VTREGEYVPS DVPKQLVYGT MVYVRQTIVA DASNALSRAV
301: CIATRYSAVR RQFGAHNGGI ETQVIDYKTQ QNRLFPLLAS AYAFRFVGEW LKWLYTDVTE RLAASDFATL PEAHACTAGL KSLTTTATAD GIEECRKLCG
401: GHGYLWCSGL PELFAVYVPA CTYEGDNVVL QLQVARFLMK TVAQLGSGKV PVGTTAYMGR AAHLLQCRSG VQKAEDWLNP DVVLEAFEAR ALRMAVTCAK
501: NLSKFENQEQ GFQELLADLV EAAIAHCQLI VVSKFIAKLE QDIGGKGVKK QLNNLCYIYA LYLLHKHLGD FLSTNCITPK QASLANDQLR SLYTQVRPNA
601: VALVDAFNYT DHYLNSVLGR YDGNVYPKLF EEALKDPLND SVVPDGYQEY LRPVLQQQLR TARL

Arabidopsis Description

ACX1Peroxisomal acyl-coenzyme A oxidase 1 [Source:UniProtKB/Swiss-Prot;Acc:O65202]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.