Factsheet for Solyc08g078400.2.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

nucleus 2
peroxisome 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	unclear
Any Predictor:	nucleus, peroxisome
BaCelLo:	nucleus
EpiLoc:	peroxisome
MultiLoc:	peroxisome
Plant-mPloc:	peroxisome
PProwler:	peroxisome
WoLF PSORT:	nucleus
YLoc:	peroxisome

unclear: 26455813

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400012318	Potato	peroxisome	93.22	91.11
Solyc08g078390.2.1	Tomato	nucleus, peroxisome, unclear	81.82	79.97
KRH16000	Soybean	cytosol, peroxisome	55.32	77.37
KRH57460	Soybean	nucleus	76.58	74.74
KRH28148	Soybean	peroxisome	76.43	74.47
CDY42938	Canola	peroxisome	74.11	72.44
Bra040093.1-P	Field mustard	peroxisome	73.96	72.29
CDY59471	Canola	peroxisome	73.96	72.29
AT4G16760.1	Thale cress	peroxisome	73.65	71.99
GSMUA_Achr7P07440_001	Banana	peroxisome	73.65	71.77
KRH04170	Soybean	nucleus	59.01	70.53
CDX79618	Canola	peroxisome	71.34	69.73
TraesCS4A01G494700.1	Wheat	golgi, peroxisome	71.65	69.61
TraesCS7A01G003900.1	Wheat	peroxisome, unclear	71.65	69.61
CDX84603	Canola	peroxisome	71.19	69.58
Bra023025.1-P	Field mustard	peroxisome	71.19	69.58
AT2G35690.1	Thale cress	peroxisome	71.19	69.58
TraesCS7D01G004400.1	Wheat	peroxisome	71.49	69.36
KXG19087	Sorghum	peroxisome	71.34	69.31
Os06t0103500-01	Rice	peroxisome	71.34	69.21
Zm00001d045251_P001	Maize	peroxisome	71.03	69.12
EER87896	Sorghum	peroxisome	70.57	68.67
KRH77335	Soybean	peroxisome	76.73	68.31
Zm00001d045606_P002	Maize	peroxisome	70.11	65.37
HORVU2Hr1G031180.5	Barley	peroxisome	22.5	49.16
VIT_00s0389g00020.t01	Wine grape	nucleus, peroxisome	63.02	47.34
Solyc04g054890.2.1	Tomato	nucleus	25.27	23.84
Solyc10g008110.2.1	Tomato	nucleus	24.35	23.13

Protein Annotations

KEGG:00071+1.3.3.6	KEGG:00592+1.3.3.6	Gene3D:1.10.540.10	Gene3D:1.20.140.10	MapMan:11.7.1.8	Gene3D:2.40.110.10
MapMan:5.7.3.2.1	InterPro:Acyl-CoA_Oxase/DH_cen-dom	InterPro:Acyl-CoA_ox_N	InterPro:Acyl-CoA_oxidase	InterPro:Acyl-CoA_oxidase_C	InterPro:AcylCoA_DH/ox_N_sf
InterPro:AcylCoA_DH/oxidase_NM_dom	InterPro:AcylCo_DH-like_C	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003995
GO:GO:0003997	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005777	GO:GO:0006629	GO:GO:0006631	GO:GO:0006635	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016627	GO:GO:0033539
GO:GO:0050660	GO:GO:0055114	GO:GO:0071949	InterPro:IPR037069	UniProt:K4CNJ9	PFAM:PF01756
PFAM:PF02770	PFAM:PF14749	PIRSF:PIRSF000168	PANTHER:PTHR10909	PANTHER:PTHR10909:SF369	SUPFAM:SSF47203
SUPFAM:SSF56645	EnsemblPlantsGene:Solyc08g078400.2	EnsemblPlants:Solyc08g078400.2.1	TMHMM:TMhelix	UniParc:UPI000276CAC3	:

Description

Acyl-coenzyme A oxidase [Source:UniProtKB/TrEMBL;Acc:K4CNJ9]

Coordinates

chr8:+:62214717..62218282

Molecular Weight (calculated)

72647.3 Da

IEP (calculated)

6.747

GRAVY (calculated)

-0.139

Length

649 amino acids

Sequence
(BLAST)

001: MEGIDYLAEE RKKAEFNVDE MKIVWAGSRR AFEVSDYISK LVADDPGFSK EERTMLSRKE LFKDTLRKSA YSWKHIIDLQ LSEEEAEKLR YFVDEPAFID
101: SHLGVFIPAI KGQGNKEQLK KWLPLAYKMQ IIGCYAQTEL GHGSNVQGLE TTATFDPQTD EFVIHSPTLT SSKWWPGGLG KVSTHAIVYA RLITDGKDHG
201: INGFIVQLRS LEDHKPLPGI TVGDIGTKFG NGAYNTMDNG VLRFDHLHIP RDQMLMRVAQ VTKDGKYVQS DVPRQLLYVS MVHVRQALVT YASGALSRAV
301: CIATRYSAVR RQFGSQNGGQ EIQVIDYKTQ QSRLFPLLAS AYAFRFVGEW LKWFCTDVTQ RLKANDFSTL PELHATTAGI KSLTTTATAD GIEECRKLCG
401: GHGYLCSSGL PELYAVSVPA CTFEGDNVVL LLQVARFLLK TLSQLSSGKK PTGTIAYMGK IEQLMQCHSD VEQAKDWLKP SAILEAFEAR AARMSVSCAQ
501: SLSKFDYPEE GFQELATDLV EAAVAHCQLI VVSKFIEKLQ QDIPGEGVKQ QLVVLCSIYA LFLLHKHQGD FLATGYITSK QGLFANEQLR ALYTQVCLIG
601: FVICVCCSFV YPKLYEAAWK DPLNESDIPD GFHEYIRPLL EQQLQTARL

Best Arabidopsis Sequence Match ( AT4G16760.1 )
(BLAST)

001: MEGIDHLADE RNKAEFDVED MKIVWAGSRH AFEVSDRIAR LVASDPVFEK SNRARLSRKE LFKSTLRKCA HAFKRIIELR LNEEEAGRLR HFIDQPAYVD
101: LHWGMFVPAI KGQGTEEQQK KWLSLANKMQ IIGCYAQTEL GHGSNVQGLE TTATFDPKTD EFVIHTPTQT ASKWWPGGLG KVSTHAVVYA RLITNGKDYG
201: IHGFIVQLRS LEDHSPLPNI TVGDIGTKMG NGAYNSMDNG FLMFDHVRIP RDQMLMRLSK VTREGEYVPS DVPKQLVYGT MVYVRQTIVA DASNALSRAV
301: CIATRYSAVR RQFGAHNGGI ETQVIDYKTQ QNRLFPLLAS AYAFRFVGEW LKWLYTDVTE RLAASDFATL PEAHACTAGL KSLTTTATAD GIEECRKLCG
401: GHGYLWCSGL PELFAVYVPA CTYEGDNVVL QLQVARFLMK TVAQLGSGKV PVGTTAYMGR AAHLLQCRSG VQKAEDWLNP DVVLEAFEAR ALRMAVTCAK
501: NLSKFENQEQ GFQELLADLV EAAIAHCQLI VVSKFIAKLE QDIGGKGVKK QLNNLCYIYA LYLLHKHLGD FLSTNCITPK QASLANDQLR SLYTQVRPNA
601: VALVDAFNYT DHYLNSVLGR YDGNVYPKLF EEALKDPLND SVVPDGYQEY LRPVLQQQLR TARL

Arabidopsis Description

ACX1Peroxisomal acyl-coenzyme A oxidase 1 [Source:UniProtKB/Swiss-Prot;Acc:O65202]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.