CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
mitochondrion 3
peroxisome 3
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra037804.1-P	Field mustard	plastid	83.88	83.38
CDY18687	Canola	plastid	83.88	83.38
VIT_00s0662g00010.t01	Wine grape	peroxisome	84.17	82.82
CDX81267	Canola	plastid	82.84	82.35
Solyc04g054890.2.1	Tomato	nucleus	83.14	81.69
AT5G65110.1	Thale cress	peroxisome	83.58	81.65
PGSC0003DMT400053145	Potato	peroxisome	83.14	81.1
Bra024355.1-P	Field mustard	cytosol, mitochondrion, peroxisome, plastid	82.69	81.01
CDY08820	Canola	peroxisome	82.69	81.01
CDY14540	Canola	peroxisome	82.4	80.84
OQU83808	Sorghum	mitochondrion, peroxisome	73.37	80.26
GSMUA_Achr2P22160_001	Banana	peroxisome	78.7	76.99
TraesCS7D01G143200.1	Wheat	peroxisome	75.15	72.78
TraesCS7A01G141800.1	Wheat	peroxisome	75.15	72.68
Zm00001d048890_P002	Maize	endoplasmic reticulum, mitochondrion, peroxisome, plastid	65.98	72.64
TraesCS7B01G044200.1	Wheat	peroxisome	75.0	72.64
TraesCS7B01G190300.1	Wheat	peroxisome	74.26	72.54
TraesCS7A01G223500.2	Wheat	peroxisome	74.56	72.52
TraesCS7D01G225100.1	Wheat	unclear	74.56	72.41
Os11t0605500-01	Rice	peroxisome	74.85	72.39
HORVU7Hr1G029110.2	Barley	mitochondrion	73.96	67.93
HORVU7Hr1G045800.4	Barley	peroxisome	72.63	67.45
Zm00001d029176_P001	Maize	plastid	35.95	64.8
TraesCS4A01G172900.1	Wheat	mitochondrion	20.71	62.5
Zm00001d003744_P001	Maize	peroxisome	52.66	61.06
Zm00001d018581_P001	Maize	cytosol, mitochondrion, peroxisome, plastid	14.05	50.8
Zm00001d052931_P001	Maize	mitochondrion, peroxisome, plasma membrane, plastid	46.75	47.73
KRH55840	Soybean	nucleus	30.77	30.81
KRH25680	Soybean	nucleus	30.77	30.81
KRH16000	Soybean	cytosol, peroxisome	20.56	29.96
KRH57460	Soybean	nucleus	26.63	27.07
KRH28148	Soybean	peroxisome	26.48	26.88
KRH04170	Soybean	nucleus	20.86	25.97
KRH77335	Soybean	peroxisome	26.63	24.69

Protein Annotations

KEGG:00071+1.3.3.6	KEGG:00592+1.3.3.6	Gene3D:1.20.140.10	EntrezGene:100799226	Gene3D:2.40.110.10	MapMan:5.7.3.2.1
InterPro:ACO	EMBL:ACUP02003317	InterPro:Acyl-CoA_Oxase/DH_cen-dom	InterPro:Acyl-CoA_oxidase	InterPro:Acyl-CoA_oxidase_C	InterPro:AcylCoA_DH/oxidase_NM_dom
InterPro:AcylCo_DH-like_C	InterPro:AcylCo_DH/oxidase_C	EnsemblPlantsGene:GLYMA_05G180100	GO:GO:0000166	GO:GO:0001676	GO:GO:0003674
GO:GO:0003824	GO:GO:0003995	GO:GO:0003997	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005777	GO:GO:0006629	GO:GO:0006631	GO:GO:0006635
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016627	GO:GO:0033539
GO:GO:0050660	GO:GO:0055114	GO:GO:0071949	UniProt:I1K4K8	EnsemblPlants:KRH59378	ProteinID:KRH59378
ProteinID:KRH59378.1	PFAM:PF00441	PFAM:PF01756	PFAM:PF02770	PIRSF:PIRSF000168	PANTHER:PTHR10909
PANTHER:PTHR10909:SF347	MetaCyc:PWY-5136	MetaCyc:PWY-6837	MetaCyc:PWY-6920	MetaCyc:PWY-7007	MetaCyc:PWY-7288
MetaCyc:PWY-7291	MetaCyc:PWY-7337	MetaCyc:PWY-7338	MetaCyc:PWY-7340	MetaCyc:PWY-735	MetaCyc:PWY-7574
MetaCyc:PWY-7606	MetaCyc:PWY-7726	MetaCyc:PWY-7854	MetaCyc:PWY-7858	SUPFAM:SSF47203	SUPFAM:SSF56645
UniParc:UPI0002339F6E	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:36825976..36832570

Molecular Weight (calculated)

75634.7 Da

IEP (calculated)

9.180

GRAVY (calculated)

-0.257

Length

676 amino acids

Sequence
(BLAST)

001: MQTPNCEAER RIQRLTLHLN PTALVAAKQL EMATCARGKL SVDTPSLSSY MRGKHVDIQE KVFDYFNANP RLQTPVEISK DEHRDLCMKQ LTGLVREAGI
101: RPLRYVVDDP AKYFAILEAV GSVDMSLGIK MGVQYSLWGG SVLNLGTKKH KDKYFDGIDN LDYPGCFAMT ELHHGSNVQG LQTVATFDII TDEFIINTPN
201: DGAIKWWIGN AAVHGKFATV FARLKLPTYD KKGLSDMGVH AFIVPIRDMK THQPLPGIEI HDCGHKVGLN GVDNGALRFR SVRIPRDNLL NRFGDVSRDG
301: KYTSSLPTVN KRFAATLGEL VGGRVGLAYS SVSVLKVAAT IAIRYSLLRQ QFGPPNQPEV SILDYQSQQH KLMPMLASTY AFHFATTNLV EKYSQMKKTH
401: DDELVADVHA LSAGLKAYVT SYTAKSLSIC REACGGHGYA AVNRFGILRN DHDIFQTFEG DNTVLLQQVA GDLLKQYKGK FKGGTFAVTW NYLRESMNTY
501: LSQPNPVTAR WEGEDHLRDP KFQLDAFRYR TSRLLQSVAV RLRKHSKSLG DFGAWNRCLN HLLTLAESHI ESVILAKFIE AVQSCPDPSS QAALKLVCDL
601: YALDRIWNDI GTYRNVDYVA PNKAKAIHKL AEYLSFQVRN IARELVDAFD LPDHVTRAPI AKRSGAYSQY TQYVGF

Best Arabidopsis Sequence Match ( AT5G65110.1 )
(BLAST)

001: MESRREKNPM TEEESDGLIA ARRIQRLSLH LSPSLTPSPS LPLVQTETCS ARSKKLDVNG EALSLYMRGK HIDIQEKIFD FFNSRPDLQT PIEISKDDHR
101: ELCMNQLIGL VREAGVRPFR YVADDPEKYF AIMEAVGSVD MSLGIKMGVQ YSLWGGSVIN LGTKKHRDKY FDGIDNLDYT GCFAMTELHH GSNVQGLQTT
201: ATFDPLKDEF VIDTPNDGAI KWWIGNAAVH GKFATVFARL ILPTHDSKGV SDMGVHAFIV PIRDMKTHQT LPGVEIQDCG HKVGLNGVDN GALRFRSVRI
301: PRDNLLNRFG DVSRDGTYTS SLPTINKRFG ATLGELVGGR VGLAYASVGV LKISATIAIR YSLLRQQFGP PKQPEVSILD YQSQQHKLMP MLASTYAYHF
401: ATVYLVEKYS EMKKTHDEQL VADVHALSAG LKSYVTSYTA KALSVCREAC GGHGYAAVNR FGSLRNDHDI FQTFEGDNTV LLQQVAADLL KRYKEKFQGG
501: TLTVTWSYLR ESMNTYLSQP NPVTARWEGE DHLRDPKFQL DAFRYRTSRL LQNVAARLQK HSKTLGGFGA WNRCLNHLLT LAESHIETVI LAKFIEAVKN
601: CPDPSAKAAL KLACDLYALD RIWKDIGTYR NVDYVAPNKA KAIHKLTEYL SFQVRNVAKE LVDAFELPDH VTRAPIAMQS DAYSQYTQVV GF

Arabidopsis Description

ACX2Acyl-coenzyme A oxidase [Source:UniProtKB/TrEMBL;Acc:A0A178UA38]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.