CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13917	Canola	endoplasmic reticulum, extracellular, mitochondrion	13.47	11.27
CDX70841	Canola	nucleus	42.69	10.3
CDX88919	Canola	cytosol	42.41	9.36
CDX92586	Canola	nucleus	5.73	5.71
CDX70840	Canola	nucleus	8.6	5.14
CDX88920	Canola	nucleus	8.6	5.1
AT5G18720.3	Thale cress	extracellular, golgi	3.15	3.22
CDX88918	Canola	cytosol	4.87	3.2
CDY13918	Canola	nucleus	5.16	3.14
CDX88917	Canola	nucleus	2.87	3.01
CDX70843	Canola	extracellular, golgi	4.58	2.96
CDX70837	Canola	mitochondrion	3.72	2.58
CDY13919	Canola	nucleus	3.15	2.33
CDX88924	Canola	plastid	4.3	2.12
CDX74108	Canola	cytosol	1.15	1.98
GSMUA_Achr11P...	Banana	cytosol	0.86	1.82
CDX92582	Canola	nucleus	4.3	1.78
CDX92583	Canola	mitochondrion, plastid	1.72	1.73
CDX76752	Canola	nucleus	2.87	1.62
CDY11521	Canola	nucleus	2.58	1.52
CDY24701	Canola	nucleus	2.29	1.36
CDY35353	Canola	cytosol	2.29	1.28
CDX99992	Canola	cytosol	3.44	1.28
CDY60894	Canola	cytosol	0.57	1.26
CDY60893	Canola	cytosol	0.57	1.26
CDY27811	Canola	nucleus	1.72	1.25
CDY19714	Canola	nucleus	3.44	1.25
CDY05255	Canola	nucleus	2.29	1.21
CDX76994	Canola	nucleus	2.01	1.2
CDX86172	Canola	nucleus	2.01	1.11
CDY27809	Canola	nucleus	3.15	1.11
CDY49460	Canola	nucleus	2.01	1.07
CDX70844	Canola	mitochondrion, plasma membrane	2.58	1.05
CDX80667	Canola	nucleus	2.01	1.05
CDX99362	Canola	nucleus	0.86	1.05
CDY19683	Canola	cytosol	2.01	1.01
CDY41919	Canola	nucleus, plastid	3.44	1.01
CDX76476	Canola	cytosol	0.29	0.98
CDY08056	Canola	nucleus	1.72	0.96
CDY27796	Canola	cytosol	1.43	0.95
CDY41935	Canola	cytosol	1.43	0.94
CDY60010	Canola	cytosol, mitochondrion, nucleus	0.57	0.91
CDY34931	Canola	cytosol	0.57	0.89
CDX74082	Canola	cytosol	0.57	0.88
CDY12569	Canola	cytosol	0.86	0.84
CDX76474	Canola	cytosol	0.57	0.83
CDY60890	Canola	cytosol	0.57	0.83
CDX74107	Canola	cytosol	0.57	0.75
CDX78941	Canola	nucleus	1.15	0.72
CDY47298	Canola	cytosol	1.15	0.68
CDX99361	Canola	cytosol	0.29	0.68
CDX74632	Canola	cytosol	1.15	0.68
CDY29872	Canola	cytosol	0.86	0.67
CDX78942	Canola	cytosol	0.57	0.65
CDX92856	Canola	nucleus	0.86	0.64
CDY41917	Canola	nucleus	1.72	0.63
CDX99360	Canola	cytosol	0.57	0.6
CDY15046	Canola	nucleus	1.15	0.58
CDX93081	Canola	nucleus	1.15	0.58
CDY60891	Canola	cytosol, mitochondrion, nucleus	0.29	0.57
CDY12382	Canola	nucleus	0.57	0.55
CDY27107	Canola	nucleus	0.57	0.55
CDY51818	Canola	nucleus	0.57	0.51
CDX76475	Canola	cytosol	0.29	0.49
CDY09330	Canola	cytosol	0.29	0.44
GSMUA_Achr11P...	Banana	cytosol	0.29	0.44
CDY40464	Canola	nucleus	0.57	0.42
CDX76473	Canola	cytosol	0.29	0.41
CDY32121	Canola	nucleus	0.29	0.22
CDY31307	Canola	cytosol	0.0	0.0
CDY08035	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDX92584	EnsemblPlantsGene:GSBRNA2T00154379001	InterPro:DUF3444	PANTHER:PTHR45089	PFAM:PF11926	ProteinID:CDX92584
ProteinID:CDX92584.1	UniParc:UPI0004EDC631	MapMan:35.2	:	:	:

Description

BnaA10g16230D

Coordinates

chrLK031872:-:1391597..1392999

Molecular Weight (calculated)

40525.0 Da

IEP (calculated)

8.792

GRAVY (calculated)

-0.318

Length

349 amino acids

Sequence
(BLAST)

001: MTLRNCGKKL ASTRAISLFP REKERLGLYS RTGISTGLQN QLLTAVTSIS LLRFCLITLT KLVYLLHSCI KQKDIFRILP HRLYRFSHRV PSFKLTGIEE
101: IMMPSISETQ PKAIYFASEG KVFQTGQFWS FYSGDDESPR YYCKIQKVSF TLVLNQEPSF KLHISRLKKA LPFPEDVIDW KEGKMPRGCG TYYPRTVLET
201: ITPSELSQQV MPQTSMDGKE YIILPKIGEV WITYRSWSAD IEVDDDLDGL GYDIVEVLDD TLDYQVVLLD RESFYEEDKK FEYKWFSPGT KYKYKELGGL
301: MPIFTIPKSE RLRFSHSVRA SRITREIHGE LKDLFKVDSR PLPYFLSGD

Best Arabidopsis Sequence Match ( AT5G18720.1 )
(BLAST)

001: MSMNLSRFCQ ITLMKLVYML HTCIKQKDLL VCSFEWEEVM KVYFVFYLRV CIGSPIGFLP LTGIEGKGVP KDAYELDKAA LPETIEEFIV PLDSESNIKS
101: KRQDIYFASK GNVFLTGQIW SFYCGDDSLP LYYGRIQKIT FTQAFMQDPV CKLHIGRLKA TRFPADVIDW ENKGTPVGCG TFYARKALEI ITPSEVSLQI
201: TPQTSIDGIE YTILPKIGEV WVIYKYWSRD MDAEDFSFAS YNIVEILDDT LEYKVQLLKH DPFYKDHKKE NTLLRAVKKN ESWEMEGSGS YIPTYTIPKR
301: ERIRFSNKVP ASRVTIEMYG ELVDLISVDS RALPSHLIAS DH

Arabidopsis Description

DNAJ heat shock amino-terminal domain protein, putative (DUF3444) [Source:UniProtKB/TrEMBL;Acc:Q3E9E2]
SUBAcon: [golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.