Subcellular Localization
min:
: max
Winner_takes_all: extracellular, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- extracellular 2
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os02t0512400-01 | |
| Os04t0393500-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G68640.1 | Os02t0512400-01 | AT3G02000.1 | 19218396 |
| AT1G68640.1 | Os04t0393500-01 | AT3G02000.1 | 19218396 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os10t0566200-00 | Rice | extracellular | 72.54 | 87.29 |
| Os06t0265400-01 | Rice | nucleus | 67.61 | 24.94 |
| HORVU7Hr1G042180.5 | Barley | nucleus | 59.86 | 22.55 |
| Os03t0318600-01 | Rice | nucleus | 52.11 | 22.22 |
| Os01t0279900-01 | Rice | nucleus | 50.7 | 21.88 |
| Os07t0687700-01 | Rice | nucleus | 50.7 | 21.56 |
| TraesCS7A01G207100.1 | Wheat | nucleus | 61.27 | 19.64 |
| GSMUA_Achr9P15550_001 | Banana | nucleus | 59.15 | 19.58 |
| TraesCS7D01G209800.1 | Wheat | nucleus | 61.27 | 19.42 |
| TraesCS7B01G114300.1 | Wheat | nucleus | 60.56 | 19.2 |
| Zm00001d037317_P003 | Maize | nucleus | 55.63 | 18.29 |
| VIT_01s0011g03230.t01 | Wine grape | nucleus | 57.04 | 17.88 |
| Bra004329.1-P | Field mustard | nucleus | 54.23 | 17.46 |
| CDY38608 | Canola | nucleus | 54.23 | 17.42 |
| CDX95999 | Canola | nucleus | 54.23 | 17.42 |
| Zm00001d037316_P008 | Maize | cytosol, nucleus, peroxisome, plastid | 41.55 | 17.4 |
| AT1G68640.1 | Thale cress | nucleus | 54.23 | 17.04 |
| OQU76203 | Sorghum | nucleus | 54.93 | 16.88 |
| Solyc05g009660.2.1 | Tomato | nucleus | 56.34 | 16.53 |
| PGSC0003DMT400033741 | Potato | nucleus | 54.93 | 16.15 |
| KRG90784 | Soybean | nucleus | 51.41 | 16.04 |
| KRH35977 | Soybean | nucleus | 50.7 | 15.79 |
| Os05t0492000-00 | Rice | nucleus | 35.92 | 15.45 |
| KRH70569 | Soybean | nucleus | 50.0 | 15.2 |
| KRH75411 | Soybean | nucleus | 50.0 | 14.61 |
| Os04t0637000-01 | Rice | nucleus | 37.32 | 13.35 |
| Os11t0152700-01 | Rice | nucleus | 40.85 | 11.98 |
| Os08t0176900-01 | Rice | nucleus | 30.99 | 11.31 |
| Os02t0194900-00 | Rice | nucleus | 29.58 | 11.26 |
| Os12t0152900-01 | Rice | nucleus | 38.03 | 11.04 |
| Os09t0489500-02 | Rice | nucleus | 40.14 | 10.9 |
| Os06t0614100-01 | Rice | nucleus | 33.8 | 10.64 |
| Os05t0443900-01 | Rice | nucleus | 35.92 | 10.54 |
| Os01t0859500-01 | Rice | nucleus | 39.44 | 10.39 |
| Os09t0280500-01 | Rice | nucleus | 33.8 | 10.28 |
| Os01t0808100-01 | Rice | nucleus | 15.49 | 6.04 |
| Os01t0859600-01 | Rice | cytosol | 14.08 | 4.8 |
Protein Annotations
| MapMan:15.5.4.7.1 | UniProt:A0A0P0VBB7 | ProteinID:BAS75570.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0043565 | InterPro:IPR025422 | EnsemblPlantsGene:Os01g0882200 | EnsemblPlants:Os01t0882200-00 | PFAM:PF14144 |
| PFscan:PS51806 | PANTHER:PTHR22952 | PANTHER:PTHR22952:SF371 | InterPro:TGA_domain | UniParc:UPI000393A266 | SEG:seg |
Description
Similar to octopine synthase binding factor3. (Os01t0882200-00)
Coordinates
chr1:-:38291672..38292452
Molecular Weight (calculated)
15536.9 Da
IEP (calculated)
4.167
GRAVY (calculated)
0.368
Length
142 amino acids
Sequence
(BLAST)
(BLAST)
001: SDVFHVLSGL WMSHAERFFM WLGGFCSSEL LKVLESHLEP LTDQLFMGIC NLQQSSQQVE DALSQGMEAL QQTLGDTLAS AAATVVVGGI GADNVTNYMG
101: QIAIAMAMLT TLENFLKLRS NINGELNCLL PWRDAMIFFC VG
101: QIAIAMAMLT TLENFLKLRS NINGELNCLL PWRDAMIFFC VG
001: MQSSFKTVPF TPDFYSQSSY FFRGDSCLEE FHQPVNGFHH EEAIDLSPNV TIASANLHYT TFDTVMDCGG GGGGGLRERL EGGEEECLDT GQLVYQKGTR
101: LVGGGVGEVN SSWCDSVSAM ADNSQHTDTS TDIDTDDKTQ LNGGHQGMLL ATNCSDQSNV KSSDQRTLRR LAQNREAARK SRLRKKAYVQ QLENSRIRLA
201: QLEEELKRAR QQGSLVERGV SADHTHLAAG NGVFSFELEY TRWKEEHQRM INDLRSGVNS QLGDNDLRVL VDAVMSHYDE IFRLKGIGTK VDVFHMLSGM
301: WKTPAERFFM WLGGFRSSEL LKILGNHVDP LTDQQLIGIC NLQQSSQQAE DALSQGMEAL QQSLLETLSS ASMGPNSSAN VADYMGHMAM AMGKLGTLEN
401: FLRQADLLRQ QTLQQLHRIL TTRQAARAFL VIHDYISRLR ALSSLWLARP RD
101: LVGGGVGEVN SSWCDSVSAM ADNSQHTDTS TDIDTDDKTQ LNGGHQGMLL ATNCSDQSNV KSSDQRTLRR LAQNREAARK SRLRKKAYVQ QLENSRIRLA
201: QLEEELKRAR QQGSLVERGV SADHTHLAAG NGVFSFELEY TRWKEEHQRM INDLRSGVNS QLGDNDLRVL VDAVMSHYDE IFRLKGIGTK VDVFHMLSGM
301: WKTPAERFFM WLGGFRSSEL LKILGNHVDP LTDQQLIGIC NLQQSSQQAE DALSQGMEAL QQSLLETLSS ASMGPNSSAN VADYMGHMAM AMGKLGTLEN
401: FLRQADLLRQ QTLQQLHRIL TTRQAARAFL VIHDYISRLR ALSSLWLARP RD
Arabidopsis Description
PANTranscription factor PERIANTHIA [Source:UniProtKB/Swiss-Prot;Acc:Q9SX27]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.