Factsheet for HORVU3Hr1G079010.5

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 1
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G003840.1
HORVU0Hr1G032230.4
HORVU1Hr1G068220.1
HORVU2Hr1G016580.5
HORVU3Hr1G019230.6
HORVU3Hr1G042790.4
HORVU3Hr1G042830.1
HORVU3Hr1G079010.5
HORVU3Hr1G106880.5
HORVU4Hr1G052330.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06960.1	HORVU3Hr1G019230.6	AT1G64280.1	10659709
AT5G06960.1	HORVU3Hr1G019230.6	AT1G64280.1	10662863
AT5G06960.1	HORVU3Hr1G019230.6	AT1G64280.1	12383081
AT5G06960.1	HORVU3Hr1G019230.6	AT1G64280.1	15634206
AT5G06960.1	HORVU3Hr1G106880.5	AT2G41370.1	21798944
AT5G06960.1	HORVU0Hr1G003840.1	AT3G02000.1	19218396
AT5G06960.1	HORVU0Hr1G032230.4	AT5G06960.1	17098811
AT5G06960.1	HORVU1Hr1G068220.1	AT5G06960.1	17098811
AT5G06960.1	HORVU2Hr1G016580.5	AT5G06960.1	17098811
AT5G06960.1	HORVU3Hr1G042790.4	AT5G06960.1	17098811
AT5G06960.1	HORVU3Hr1G042830.1	AT5G06960.1	17098811
AT5G06960.1	HORVU3Hr1G079010.5	AT5G06960.1	17098811
AT5G06960.1	HORVU4Hr1G052330.3	AT5G06960.1	17098811
AT5G06960.1	HORVU0Hr1G032230.4	AT5G06960.1	21798944
AT5G06960.1	HORVU1Hr1G068220.1	AT5G06960.1	21798944
AT5G06960.1	HORVU2Hr1G016580.5	AT5G06960.1	21798944
AT5G06960.1	HORVU3Hr1G042790.4	AT5G06960.1	21798944
AT5G06960.1	HORVU3Hr1G042830.1	AT5G06960.1	21798944
AT5G06960.1	HORVU3Hr1G079010.5	AT5G06960.1	21798944
AT5G06960.1	HORVU4Hr1G052330.3	AT5G06960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G365100.1	Wheat	nucleus	97.27	97.27
TraesCS3A01G334100.1	Wheat	nucleus	96.86	97.26
TraesCS3D01G327600.1	Wheat	nucleus	97.06	97.06
EES03778	Sorghum	nucleus	83.02	84.62
HORVU3Hr1G042830.1	Barley	cytosol, mitochondrion, nucleus, plastid	25.79	82.55
HORVU3Hr1G042790.4	Barley	nucleus	56.6	81.57
Solyc11g064950.1.1	Tomato	nucleus	55.14	81.17
PGSC0003DMT400024428	Potato	nucleus	55.14	81.17
KRH36324	Soybean	nucleus	56.39	81.02
Bra034767.1-P	Field mustard	nucleus	54.93	79.15
AT5G06950.5	Thale cress	nucleus	54.72	79.09
Zm00001d043153_P001	Maize	nucleus	69.81	78.91
CDY08443	Canola	nucleus	54.72	78.85
HORVU4Hr1G052330.3	Barley	nucleus	55.14	78.74
Bra009241.1-P	Field mustard	nucleus	50.52	77.74
CDY00762	Canola	nucleus	53.46	77.04
CDX73830	Canola	nucleus	53.46	77.04
Bra001443.1-P	Field mustard	nucleus	53.46	77.04
CDY50562	Canola	nucleus	53.88	76.95
Bra038705.1-P	Field mustard	nucleus	53.88	76.95
CDY52616	Canola	nucleus	53.67	76.88
CDX70053	Canola	nucleus	52.62	76.76
CDX98971	Canola	nucleus	52.62	76.52
Solyc01g008730.2.1	Tomato	nucleus	52.41	76.45
Zm00001d012553_P003	Maize	nucleus	74.84	75.96
Os01t0808100-01	Rice	nucleus	57.86	75.82
PGSC0003DMT400026710	Potato	mitochondrion	27.88	75.57
AT5G06960.1	Thale cress	nucleus	52.2	75.45
HORVU2Hr1G016580.5	Barley	nucleus	52.83	74.78
CDY05010	Canola	nucleus	50.1	73.31
Bra028713.1-P	Field mustard	nucleus	49.9	73.01
CDY14061	Canola	nucleus	49.9	73.01
AT3G12250.4	Thale cress	nucleus	54.09	72.68
VIT_08s0007g05170.t01	Wine grape	nucleus	67.3	71.18
KRH66777	Soybean	nucleus	42.77	70.34
VIT_13s0084g00660.t01	Wine grape	nucleus	68.97	70.15
CDY42138	Canola	nucleus	46.96	69.14
KRG95103	Soybean	nucleus	65.62	68.19
PGSC0003DMT400060926	Potato	nucleus	61.64	67.9
KRH66771	Soybean	nucleus	64.99	67.39
KRG93068	Soybean	nucleus	61.84	66.44
Solyc10g080780.1.1	Tomato	cytosol	37.32	66.17
PGSC0003DMT400060922	Potato	nucleus	37.11	66.04
Solyc10g080770.1.1	Tomato	nucleus	62.05	65.78
KRH20680	Soybean	nucleus	63.73	64.82
HORVU7Hr1G042180.5	Barley	nucleus	47.59	60.21
KRH13334	Soybean	nucleus	61.84	59.36
HORVU1Hr1G068220.1	Barley	nucleus	40.25	55.98
HORVU4Hr1G025130.10	Barley	nucleus	39.2	51.52
HORVU2Hr1G116130.4	Barley	nucleus	13.21	47.37
HORVU0Hr1G032230.4	Barley	nucleus	32.08	43.59
HORVU1Hr1G073870.2	Barley	nucleus	39.62	36.14
HORVU0Hr1G015710.1	Barley	nucleus	33.96	35.22
HORVU5Hr1G073410.1	Barley	nucleus	36.69	30.86
HORVU5Hr1G053330.5	Barley	nucleus	32.29	30.56
HORVU2Hr1G116090.2	Barley	cytosol	23.9	26.95
HORVU3Hr1G084340.10	Barley	nucleus	27.25	22.85

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	MapMan:15.5.4.7.1	MapMan:26.8.3.1.2	UniProt:A0A287LU78	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	EnsemblPlantsGene:HORVU3Hr1G079010	EnsemblPlants:HORVU3Hr1G079010.5	InterPro:IPR004827	InterPro:IPR025422	PFAM:PF00170
PFAM:PF14144	ScanProsite:PS00036	PFscan:PS50217	PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF255
SMART:SM00338	SUPFAM:SSF57959	InterPro:TGA_domain	UniParc:UPI000B46620D	InterPro:bZIP	SEG:seg

Description

No Description!

Coordinates

chrchr3H:-:581291048..581296751

Molecular Weight (calculated)

51980.2 Da

IEP (calculated)

7.030

GRAVY (calculated)

-0.486

Length

477 amino acids

Sequence
(BLAST)

001: MESRRGGGGP AAAAAAAAGD PRGPMPGFGA PQHTIPTDVN IMQPSRVADF GALAHSAGFR IEDLANFSTN NLFNLKPNTH AYTSDPLQFG NYGKSISPTD
101: LATTAAAAVT AVDPQALLQQ KAVQPNLVAL RTRNNENWGE SSMADTSPRT DTSTDPDIDI DERNQMFEQG QLAAPTASDS SDKSRDKLDH KQSLRRLAQN
201: REAARKSRLR KKAYIQNLES SRLKLTQLEQ ELQRARQQGI FISSSGDQAH SAGGNGAVAF DMEYARWLEE HNKHINELRA AANAHAGDDD LRSIVDSIMA
301: QYDEFFRLKG VAAKADVFHV LSGMWKTPAE RCFMWLGGFR SSELLKLLAG QLEPLTEQQL TGICNLQQSS QQAEDALSQG MEALQQSLAE TLASGSLGPA
401: GSSGNVASYM GQMAMAMGKL GTLENFLRQA DNLRLQTLQQ MQRILTTRQS ARALLAISDY FSRLRALSSL WLARPRE

Best Arabidopsis Sequence Match ( AT5G06950.2 )
(BLAST)

001: MADTSPRTDV STDDDTDHPD LGSEGALVNT AASDSSDRSK GKMDQKTLRR LAQNREAARK SRLRKKAYVQ QLENSRLKLT QLEQELQRAR QQGVFISGTG
101: DQAHSTGGNG ALAFDAEHSR WLEEKNKQMN ELRSALNAHA GDSELRIIVD GVMAHYEELF RIKSNAAKND VFHLLSGMWK TPAERCFLWL GGFRSSELLK
201: LLANQLEPMT ERQLMGINNL QQTSQQAEDA LSQGMESLQQ SLADTLSSGT LGSSSSGNVA SYMGQMAMAM GKLGTLEGFI RQADNLRLQT LQQMIRVLTT
301: RQSARALLAI HDYFSRLRAL SSLWLARPRE

Arabidopsis Description

TGA2BZIP transcription factor TGA2 [Source:UniProtKB/TrEMBL;Acc:B2BDR5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.