CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 3
plastid 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93068
KRH13334
KRH20680
KRH36324

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G45110.1	KRG93068	AT5G06960.1	21798944
AT5G45110.1	KRH13334	AT5G06960.1	21798944
AT5G45110.1	KRH20680	AT5G06960.1	21798944
AT5G45110.1	KRH36324	AT5G06960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11740	Soybean	plastid	96.1	96.1
VIT_10s0042g01250.t01	Wine grape	cytosol, plastid	79.15	79.56
Solyc02g069310.2.1	Tomato	cytosol, plastid	69.32	70.4
PGSC0003DMT400054660	Potato	cytosol, plastid	68.81	69.88
GSMUA_Achr5P02120_001	Banana	cytosol	63.05	63.7
GSMUA_Achr4P32060_001	Banana	cytosol, plastid	64.07	63.53
KRH73603	Soybean	cytosol, plastid	62.88	62.88
CDY26398	Canola	plastid	59.83	62.81
CDX82577	Canola	plastid	57.46	62.55
Bra025093.1-P	Field mustard	plastid	57.8	62.45
CDY39410	Canola	plastid	57.8	62.45
Bra021949.1-P	Field mustard	plastid	59.32	62.28
CDX78955	Canola	plastid	61.86	62.07
KRH14520	Soybean	cytosol, plastid	62.03	62.03
Bra013416.1-P	Field mustard	plastid	61.53	61.73
CDX99350	Canola	plastid	61.36	61.56
AT5G45110.1	Thale cress	cytosol, plastid	60.51	60.92
AT4G19660.2	Thale cress	cytosol, plastid	60.68	59.57
EES01524	Sorghum	plastid	62.2	59.1
Zm00001d012660_P002	Maize	cytosol	61.86	58.78
TraesCS3D01G302900.1	Wheat	cytosol, plastid	58.31	56.67
TraesCS3B01G337700.1	Wheat	plastid	58.31	56.49
TraesCS3A01G298800.1	Wheat	plastid	58.64	55.99
Os01t0767900-01	Rice	plastid	59.83	55.59
HORVU3Hr1G074640.4	Barley	cytosol, plastid	57.8	55.27
Os03t0667100-01	Rice	cytosol	49.83	49.92
Zm00001d013581_P001	Maize	cytosol	16.78	49.25
Zm00001d034944_P004	Maize	cytosol	37.97	49.23
CDY36698	Canola	cytosol	42.2	48.92
TraesCS4D01G017500.1	Wheat	cytosol	48.81	48.32
TraesCS4A01G294400.1	Wheat	cytosol, plastid	49.15	48.25
HORVU4Hr1G003040.1	Barley	cytosol, plastid	48.14	48.22
TraesCS4B01G018900.2	Wheat	cytosol, plastid	48.98	48.09
EER91108	Sorghum	plastid	48.64	47.99
KRH37416	Soybean	cytosol	42.54	43.13
KRG95113	Soybean	cytosol	19.49	33.05
KRH66789	Soybean	cytosol	23.56	28.54
KRH72058	Soybean	cytosol	22.03	27.31

Protein Annotations

Gene3D:1.25.40.20	EntrezGene:100217338	MapMan:11.8.2.1	Gene3D:3.30.710.10	EMBL:ACUP02005389	InterPro:Ankyrin_rpt
InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	UniProt:B8XQT5	InterPro:BTB/POZ_dom	EMBL:FJ418595	EnsemblPlantsGene:GLYMA_09G020800
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006464	GO:GO:0006950	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009605	GO:GO:0009607	GO:GO:0009719	GO:GO:0009987
GO:GO:0019005	GO:GO:0019538	GO:GO:0030162	GO:GO:0031625	GO:GO:0042742	GO:GO:0042787
GO:GO:0043161	GO:GO:2000022	InterPro:IPR000210	InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR036770
EnsemblPlants:KRH36735	ProteinID:KRH36735	ProteinID:KRH36735.1	InterPro:NPR1/NIM1-like_C	PFAM:PF00651	PFAM:PF12313
PFAM:PF12796	PFscan:PS50088	PFscan:PS50097	PFscan:PS50297	PANTHER:PTHR24413	PANTHER:PTHR24413:SF124
InterPro:SKP1/BTB/POZ_sf	SMART:SM00225	SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF54695	UniParc:UPI000189596C
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:1637269..1642892

Molecular Weight (calculated)

65980.8 Da

IEP (calculated)

6.599

GRAVY (calculated)

-0.287

Length

590 amino acids

Sequence
(BLAST)

001: MAYSAEPSSS LSFTSSSHLS NGSVSHNICP SYGSDPGPNL EAISLSKLSS NLEQLLIEPD CDYSDADLVV EGIPVSVHRC ILASRSKFFH ELFKREKGSS
101: EKEGKLKYNM NDLLPYGKVG YEAFLIFLGY VYTGKLKPSP MEVSTCVDNV CAHDACRPAI NFAVELMYAS SIFQIPELVS LFQRRLLNFI GKALVEDVIP
201: ILTVAFHCQS NQLVNQCIDR VARSDLDQIS IDQELPHELS QKVKLLRRKP QQDVENDASV VDALSLKRIT RIHKALDSDD VELVKLLLNE SDITLDEANA
301: LHYAAAYCDP KVVSEVLGLG LANVNLRNSR GYTVLHIAAM RKEPSIIVSL LTKGACASDL TFDGQSAVSI CRRLTRPKDY HAKTEQGKET NKDRICIDVL
401: EREMRRNPMA GDACMSSHTM ADDLHMKLLY LENRVAFARL FFPSEAKLAM DIAHAETTSE FAGLSASNSK GSNGNLREVD LNETPIVQNK RLLSRMEALT
501: KTVEMGRRYF PHCSEVLDKF MEDDLPDLFY LEKGTHEEQR IKRTRFMELK DDVHKAFNKD KAEFSRSGIS SSSSSSSLRD SVVHYKARKV

Best Arabidopsis Sequence Match ( AT5G45110.1 )
(BLAST)

001: MATLTEPSSS LSFTSSHFSY GSIGSNHFSS SSASNPEVVS LTKLSSNLEQ LLSNSDCDYS DAEIIVDGVP VGVHRCILAA RSKFFQDLFK KEKKISKTEK
101: PKYQLREMLP YGAVAHEAFL YFLSYIYTGR LKPFPLEVST CVDPVCSHDC CRPAIDFVVQ LMYASSVLQV PELVSSFQRR LCNFVEKTLV ENVLPILMVA
201: FNCKLTQLLD QCIERVARSD LYRFCIEKEV PPEVAEKIKQ LRLISPQDEE TSPKISEKLL ERIGKILKAL DSDDVELVKL LLTESDITLD QANGLHYSVV
301: YSDPKVVAEI LALDMGDVNY RNSRGYTVLH FAAMRREPSI IISLIDKGAN ASEFTSDGRS AVNILRRLTN PKDYHTKTAK GRESSKARLC IDILEREIRK
401: NPMVLDTPMC SISMPEDLQM RLLYLEKRVG LAQLFFPTEA KVAMDIGNVE GTSEFTGLSP PSSGLTGNLS QVDLNETPHM QTQRLLTRMV ALMKTVETGR
501: RFFPYGSEVL DKYMAEYIDD DILDDFHFEK GSTHERRLKR MRYRELKDDV QKAYSKDKES KIARSCLSAS SSPSSSSIRD DLHNTT

Arabidopsis Description

NPR3NPR3 [Source:UniProtKB/TrEMBL;Acc:A0A178UGU4]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.