Factsheet for TraesCS4D01G017500.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
plastid 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G096300.1
TraesCS1B01G127400.1
TraesCS1D01G105300.1
TraesCS2A01G097500.2
TraesCS2B01G113200.2
TraesCS2D01G096800.2
TraesCS3A01G190700.2
TraesCS3A01G334100.1
TraesCS3B01G220400.2
TraesCS3B01G365100.1
TraesCS3D01G194800.2
TraesCS3D01G327600.1
TraesCS4A01G126300.2
TraesCS4B01G178600.1
TraesCS4D01G180200.4

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G45110.1	TraesCS1A01G096300.1	AT5G06960.1	21798944
AT5G45110.1	TraesCS1B01G127400.1	AT5G06960.1	21798944
AT5G45110.1	TraesCS1D01G105300.1	AT5G06960.1	21798944
AT5G45110.1	TraesCS2A01G097500.2	AT5G06960.1	21798944
AT5G45110.1	TraesCS2B01G113200.2	AT5G06960.1	21798944
AT5G45110.1	TraesCS2D01G096800.2	AT5G06960.1	21798944
AT5G45110.1	TraesCS3A01G190700.2	AT5G06960.1	21798944
AT5G45110.1	TraesCS3A01G334100.1	AT5G06960.1	21798944
AT5G45110.1	TraesCS3B01G220400.2	AT5G06960.1	21798944
AT5G45110.1	TraesCS3B01G365100.1	AT5G06960.1	21798944
AT5G45110.1	TraesCS3D01G194800.2	AT5G06960.1	21798944
AT5G45110.1	TraesCS3D01G327600.1	AT5G06960.1	21798944
AT5G45110.1	TraesCS4A01G126300.2	AT5G06960.1	21798944
AT5G45110.1	TraesCS4B01G178600.1	AT5G06960.1	21798944
AT5G45110.1	TraesCS4D01G180200.4	AT5G06960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G018900.2	Wheat	cytosol, plastid	97.82	97.0
TraesCS4A01G294400.1	Wheat	cytosol, plastid	97.82	97.0
HORVU4Hr1G003040.1	Barley	cytosol, plastid	92.62	93.72
Zm00001d013581_P001	Maize	cytosol	26.34	78.11
Os03t0667100-01	Rice	cytosol	75.17	76.06
EER91108	Sorghum	plastid	75.0	74.75
Zm00001d034944_P004	Maize	cytosol	55.03	72.09
GSMUA_Achr5P02120_001	Banana	cytosol	50.84	51.88
GSMUA_Achr4P32060_001	Banana	cytosol, plastid	51.01	51.09
VIT_10s0042g01250.t01	Wine grape	cytosol, plastid	48.66	49.4
KRH36735	Soybean	cytosol, plastid	48.32	48.81
TraesCS3D01G302900.1	Wheat	cytosol, plastid	49.5	48.6
KRH11740	Soybean	plastid	47.65	48.14
Solyc02g069310.2.1	Tomato	cytosol, plastid	44.13	45.27
PGSC0003DMT400054660	Potato	cytosol, plastid	43.96	45.09
KRH73603	Soybean	cytosol, plastid	43.96	44.41
CDX82577	Canola	plastid	40.27	44.28
KRH14520	Soybean	cytosol, plastid	43.79	44.24
AT5G45110.1	Thale cress	cytosol, plastid	43.46	44.2
PGSC0003DMT400002412	Potato	cytosol	42.62	44.17
CDY26398	Canola	plastid	41.61	44.13
Bra025093.1-P	Field mustard	plastid	40.1	43.77
CDY39410	Canola	plastid	40.1	43.77
Bra021949.1-P	Field mustard	plastid	41.28	43.77
Solyc07g044980.2.1	Tomato	nucleus	41.95	43.63
CDX78955	Canola	plastid	42.62	43.2
Bra013416.1-P	Field mustard	plastid	42.62	43.2
CDX99350	Canola	plastid	42.11	42.69
AT4G19660.2	Thale cress	cytosol, plastid	41.78	41.43
TraesCS3D01G107500.1	Wheat	cytosol	36.41	37.41
TraesCS7D01G019000.1	Wheat	cytosol, mitochondrion	30.54	37.37
CDY36698	Canola	cytosol	29.03	33.99
TraesCS5D01G139600.1	Wheat	cytosol	19.46	23.53
TraesCS3D01G484100.1	Wheat	cytosol	18.96	22.11

Protein Annotations

Gene3D:1.25.40.20	MapMan:11.8.2.1	Gene3D:3.30.710.10	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf
InterPro:BTB/POZ_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006950	GO:GO:0008150
GO:GO:0009605	GO:GO:0009607	GO:GO:0042742	InterPro:IPR000210	InterPro:IPR002110	InterPro:IPR020683
InterPro:IPR036770	InterPro:NPR1/NIM1-like_C	InterPro:NPR_central_dom	PFAM:PF00651	PFAM:PF11900	PFAM:PF12313
PFAM:PF12796	PFscan:PS50088	PFscan:PS50097	PFscan:PS50297	PANTHER:PTHR24413	PANTHER:PTHR24413:SF114
InterPro:SKP1/BTB/POZ_sf	SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF54695	EnsemblPlantsGene:TraesCS4D01G017500	EnsemblPlants:TraesCS4D01G017500.1
TIGR:cd00204	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4D:-:7769540..7772478

Molecular Weight (calculated)

66391.2 Da

IEP (calculated)

6.184

GRAVY (calculated)

-0.280

Length

596 amino acids

Sequence
(BLAST)

001: METSTVTYSS SSPPPSSSPP QQAEQAADLD AVSLGRLSAN LERLLDPAFL SCADADVVLA DDAGVVGVHR CILAARSGFF LDHFSNRLAN PAAGEKEKEK
101: ERPRLELAEL VPGGRHIGRD ALVAVLGYLY TGRLKPPPRD SAVCVDERCP HEACRPAMDF VVESTYAASG FQISELVSLF QRRLSDFVNI ALVEDIVPIV
201: HVASTCQLHE LLSQCIQRIA GSNVDSRYLE KELPDEAFAK VKEFRRYSLH DDSDEFILDP EHAKKVRNIH KALDCDDVDL VGLLLQESAI TLDDALAIHY
301: AAAYCEPKVL ALLLKLDPAG DCVNVNLKND SGYTPLHLAC MRREPQILLS LIEKGASVVE RTHDGRDALT ICKRLTTEKD CNKKLEKCKE RSKAYLCIDI
401: LEQEIKRKSF IFEELLSAEV SVATPLLVDN FHMRLINLEN RVAFARIFFP SEAKLVMRIA QADSTEEFAG LTSANFSKLK EVDLNETPTM QNRRLRERLD
501: ALTKTVELGR KYFPHCSDVL DKFLMEESTD LHFLESGSAE DQYTRRTRFS ELKEDVRKAF SKDKAVAAIA SSTSSSSPRG DGKVSRHGHK KARLSR

Best Arabidopsis Sequence Match ( AT1G64280.1 )
(BLAST)

001: MDTTIDGFAD SYEISSTSFV ATDNTDSSIV YLAAEQVLTG PDVSALQLLS NSFESVFDSP DDFYSDAKLV LSDGREVSFH RCVLSARSSF FKSALAAAKK
101: EKDSNNTAAV KLELKEIAKD YEVGFDSVVT VLAYVYSSRV RPPPKGVSEC ADENCCHVAC RPAVDFMLEV LYLAFIFKIP ELITLYQRHL LDVVDKVVIE
201: DTLVILKLAN ICGKACMKLL DRCKEIIVKS NVDMVSLEKS LPEELVKEII DRRKELGLEV PKVKKHVSNV HKALDSDDIE LVKLLLKEDH TNLDDACALH
301: FAVAYCNVKT ATDLLKLDLA DVNHRNPRGY TVLHVAAMRK EPQLILSLLE KGASASEATL EGRTALMIAK QATMAVECNN IPEQCKHSLK GRLCVEILEQ
401: EDKREQIPRD VPPSFAVAAD ELKMTLLDLE NRVALAQRLF PTEAQAAMEI AEMKGTCEFI VTSLEPDRLT GTKRTSPGVK IAPFRILEEH QSRLKALSKT
501: VELGKRFFPR CSAVLDQIMN CEDLTQLACG EDDTAEKRLQ KKQRYMEIQE TLKKAFSEDN LELGNSSLTD STSSTSKSTG GKRSNRKLSH RRR

Arabidopsis Description

NPR1Regulatory protein NPR1 [Source:UniProtKB/Swiss-Prot;Acc:P93002]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.