Factsheet for TraesCS4A01G294400.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 3
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G096300.1
TraesCS1B01G127400.1
TraesCS1D01G105300.1
TraesCS2A01G097500.2
TraesCS2B01G113200.2
TraesCS2D01G096800.2
TraesCS3A01G190700.2
TraesCS3A01G334100.1
TraesCS3B01G220400.2
TraesCS3B01G365100.1
TraesCS3D01G194800.2
TraesCS3D01G327600.1
TraesCS4A01G126300.2
TraesCS4B01G178600.1
TraesCS4D01G180200.4

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G45110.1	TraesCS1A01G096300.1	AT5G06960.1	21798944
AT5G45110.1	TraesCS1B01G127400.1	AT5G06960.1	21798944
AT5G45110.1	TraesCS1D01G105300.1	AT5G06960.1	21798944
AT5G45110.1	TraesCS2A01G097500.2	AT5G06960.1	21798944
AT5G45110.1	TraesCS2B01G113200.2	AT5G06960.1	21798944
AT5G45110.1	TraesCS2D01G096800.2	AT5G06960.1	21798944
AT5G45110.1	TraesCS3A01G190700.2	AT5G06960.1	21798944
AT5G45110.1	TraesCS3A01G334100.1	AT5G06960.1	21798944
AT5G45110.1	TraesCS3B01G220400.2	AT5G06960.1	21798944
AT5G45110.1	TraesCS3B01G365100.1	AT5G06960.1	21798944
AT5G45110.1	TraesCS3D01G194800.2	AT5G06960.1	21798944
AT5G45110.1	TraesCS3D01G327600.1	AT5G06960.1	21798944
AT5G45110.1	TraesCS4A01G126300.2	AT5G06960.1	21798944
AT5G45110.1	TraesCS4B01G178600.1	AT5G06960.1	21798944
AT5G45110.1	TraesCS4D01G180200.4	AT5G06960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G018900.2	Wheat	cytosol, plastid	97.84	97.84
TraesCS4D01G017500.1	Wheat	cytosol	97.0	97.82
HORVU4Hr1G003040.1	Barley	cytosol, plastid	93.01	94.91
Zm00001d013581_P001	Maize	cytosol	26.12	78.11
Os03t0667100-01	Rice	cytosol	75.37	76.91
EER91108	Sorghum	plastid	74.88	75.25
Zm00001d034944_P004	Maize	cytosol	55.41	73.19
GSMUA_Achr5P02120_001	Banana	cytosol	50.58	52.05
GSMUA_Achr4P32060_001	Banana	cytosol, plastid	50.75	51.26
VIT_10s0042g01250.t01	Wine grape	cytosol, plastid	48.59	49.74
KRH36735	Soybean	cytosol, plastid	48.25	49.15
KRH11740	Soybean	plastid	47.59	48.47
TraesCS3A01G298800.1	Wheat	plastid	49.42	48.06
Solyc02g069310.2.1	Tomato	cytosol, plastid	44.43	45.96
PGSC0003DMT400054660	Potato	cytosol, plastid	44.26	45.78
PGSC0003DMT400002412	Potato	cytosol	42.76	44.7
CDY26398	Canola	plastid	41.6	44.48
KRH73603	Soybean	cytosol, plastid	43.59	44.41
CDX82577	Canola	plastid	39.93	44.28
KRH14520	Soybean	cytosol, plastid	43.43	44.24
AT5G45110.1	Thale cress	cytosol, plastid	43.09	44.2
Solyc07g044980.2.1	Tomato	nucleus	42.1	44.15
CDY39410	Canola	plastid	40.1	44.14
Bra025093.1-P	Field mustard	plastid	40.1	44.14
Bra021949.1-P	Field mustard	plastid	41.26	44.13
CDX78955	Canola	plastid	42.93	43.88
Bra013416.1-P	Field mustard	plastid	42.76	43.71
CDX99350	Canola	plastid	42.43	43.37
AT4G19660.2	Thale cress	cytosol, plastid	42.1	42.1
TraesCS3A01G105400.1	Wheat	cytosol	36.44	37.95
TraesCS4A01G470500.1	Wheat	cytosol	30.28	37.22
CDY36698	Canola	cytosol	28.95	34.18
TraesCS7A01G021800.1	Wheat	cytosol, plastid	30.62	32.92
TraesCS5A01G134700.2	Wheat	cytosol	19.63	23.94
TraesCS3A01G489000.1	Wheat	cytosol	19.13	22.37
TraesCS7A01G022800.1	Wheat	cytosol	34.11	13.69

Protein Annotations

Gene3D:1.25.40.20	MapMan:11.8.2.1	Gene3D:3.30.710.10	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf
InterPro:BTB/POZ_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006950	GO:GO:0008150
GO:GO:0009605	GO:GO:0009607	GO:GO:0042742	InterPro:IPR000210	InterPro:IPR002110	InterPro:IPR020683
InterPro:IPR036770	InterPro:NPR1/NIM1-like_C	InterPro:NPR_central_dom	PFAM:PF00651	PFAM:PF11900	PFAM:PF12313
PFAM:PF12796	PFscan:PS50088	PFscan:PS50097	PFscan:PS50297	PANTHER:PTHR24413	PANTHER:PTHR24413:SF114
InterPro:SKP1/BTB/POZ_sf	SMART:SM00225	SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF54695	EnsemblPlantsGene:TraesCS4A01G294400
EnsemblPlants:TraesCS4A01G294400.1	TIGR:cd00204	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4A:+:595817811..595821043

Molecular Weight (calculated)

66610.4 Da

IEP (calculated)

6.113

GRAVY (calculated)

-0.258

Length

601 amino acids

Sequence
(BLAST)

001: METSTVTYSS SSPPPSSSPP QQAEQAADLD AVSLGRLSAN LERLLDPAFL SCADANVVLA AGGDDAAAVV GVHRCILAAR SSFFLDHFSN KLADPAAAGE
101: KEKEKERPRL ELADLVPGGR HIGRDALVAV LGYLYTGRLK PPPRDSAVCV DERCPHEACR PAIDFVVEST YAASGFQISE LVSLFQRRLS DFVNIALVED
201: IVPIVHVAST CQLHELLSQC IQRVAGSSVD SRYLEKELPD DAFAKVKEFR RYSLHDDSDE FILDPEHAKK VRNIHKALDC DDVDLVGLLL QESAITLDDA
301: LAIHYAAAYC EPKVLALLLK LDPAGDCVNV NLKNDSGYTP LHLACMRREP QILLSLIEKG ASVVERTQDG RDALTICKRL TTEKDCNKKL EKCKERSKAY
401: LCIDILEQEI KRKSFIFEEL LSAEVSVATP LLVDNFHMRL INLENRVAFA RIFFPSEAKL VMRIAQADST EEFAGLTSAN FSKLKEVDLN ETPTMQNKRL
501: RERLDALTKT VELGRKYFPH CSDVLDKFLM EESTDLHFLE SGSAEDQYTR RTRFSELKED VRKAFSKDKA VAAIASSTSS SSPRGDGKVS RHGHKKARLS
601: R

Best Arabidopsis Sequence Match ( AT1G64280.1 )
(BLAST)

001: MDTTIDGFAD SYEISSTSFV ATDNTDSSIV YLAAEQVLTG PDVSALQLLS NSFESVFDSP DDFYSDAKLV LSDGREVSFH RCVLSARSSF FKSALAAAKK
101: EKDSNNTAAV KLELKEIAKD YEVGFDSVVT VLAYVYSSRV RPPPKGVSEC ADENCCHVAC RPAVDFMLEV LYLAFIFKIP ELITLYQRHL LDVVDKVVIE
201: DTLVILKLAN ICGKACMKLL DRCKEIIVKS NVDMVSLEKS LPEELVKEII DRRKELGLEV PKVKKHVSNV HKALDSDDIE LVKLLLKEDH TNLDDACALH
301: FAVAYCNVKT ATDLLKLDLA DVNHRNPRGY TVLHVAAMRK EPQLILSLLE KGASASEATL EGRTALMIAK QATMAVECNN IPEQCKHSLK GRLCVEILEQ
401: EDKREQIPRD VPPSFAVAAD ELKMTLLDLE NRVALAQRLF PTEAQAAMEI AEMKGTCEFI VTSLEPDRLT GTKRTSPGVK IAPFRILEEH QSRLKALSKT
501: VELGKRFFPR CSAVLDQIMN CEDLTQLACG EDDTAEKRLQ KKQRYMEIQE TLKKAFSEDN LELGNSSLTD STSSTSKSTG GKRSNRKLSH RRR

Arabidopsis Description

NPR1Regulatory protein NPR1 [Source:UniProtKB/Swiss-Prot;Acc:P93002]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.