Factsheet for VIT_13s0019g04320.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g02800.t01	Wine grape	nucleus	73.01	72.75
HORVU5Hr1G061410.29	Barley	cytosol	22.83	66.44
Os10t0480200-01	Rice	nucleus	65.64	65.71
HORVU1Hr1G041790.2	Barley	nucleus	64.45	64.52
GSMUA_Achr5P18530_001	Banana	cytosol, nucleus, plastid	63.97	64.51
TraesCS1B01G173900.1	Wheat	nucleus	64.33	64.4
TraesCS1A01G157500.1	Wheat	nucleus	64.33	64.4
VIT_10s0003g04670.t01	Wine grape	cytosol, nucleus, plastid	64.57	64.26
OQU93425	Sorghum	nucleus	64.21	64.13
TraesCS1D01G155200.3	Wheat	nucleus	63.85	64.08
EER94065	Sorghum	nucleus	63.38	63.6
Zm00001d048527_P028	Maize	nucleus	63.97	63.59
Os03t0109400-02	Rice	nucleus	63.26	63.41
Zm00001d027317_P015	Maize	nucleus	63.73	62.84
TraesCS5A01G549700.1	Wheat	nucleus	61.95	62.17
TraesCS4D01G359600.1	Wheat	nucleus	61.83	62.05
TraesCS4B01G385200.1	Wheat	nucleus	61.83	61.98
HORVU4Hr1G090030.9	Barley	nucleus	61.59	61.81
VIT_09s0002g03740.t01	Wine grape	cytosol	59.93	59.93
Zm00001d032681_P004	Maize	cytosol, nucleus, plastid	61.24	59.06
VIT_04s0008g03250.t01	Wine grape	cytosol	59.22	58.59
Zm00001d049529_P001	Maize	cytosol, plastid	10.23	45.26
VIT_18s0001g00620.t01	Wine grape	cytosol	4.76	38.84
Os03t0769800-01	Rice	plastid	4.28	14.88
Os10t0147300-02	Rice	plastid	0.95	7.34

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100261558	wikigene:100261558	MapMan:15.5.3.2	Gene3D:3.30.530.20	ProteinID:CCB56182
ProteinID:CCB56182.1	ncoils:Coil	UniProt:F6HNG3	EMBL:FN595998	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0008289	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913	InterPro:IPR023393
EntrezGene:LOC100261558	wikigene:LOC100261558	InterPro:MEKHLA	PFAM:PF00046	PFAM:PF01852	PFAM:PF08670
PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF279	SMART:SM00234	SMART:SM00389
SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START-like_dom_sf	InterPro:START_lipid-bd_dom	UniParc:UPI00019848D0	ArrayExpress:VIT_13s0019g04320
EnsemblPlantsGene:VIT_13s0019g04320	EnsemblPlants:VIT_13s0019g04320.t01	RefSeq:XP_002274194	RefSeq:XP_002274194.1	SEG:seg	:

Description

No Description!

Coordinates

chr13:+:5642849..5655110

Molecular Weight (calculated)

91770.9 Da

IEP (calculated)

6.383

GRAVY (calculated)

-0.117

Length

841 amino acids

Sequence
(BLAST)

001: MEELAATVGA QGESSGGGAG GGGGGDGKYV RYTAEQVEAL ERVYAECPKP SSTRRQQLIR ECPILSNIES KQIKVWFQNR RCREKQKKEA VQLQSVNKKL
101: NSMNKLLMEE NERLQKQVSQ LVYENGYMKQ QLQNVTATTT DTRCDSLVAT PQHSSRTGNN PIGLLSIAEE AMGEFLSKAK GTAVDWVQIP GMKPGPDSVG
201: TVAISHSCNG VAARACSLVS LEPTEIMEIL KDRQSWFRDC RKLEVFAKFP AGNGGILELI YMQVYAPTTL APARDFWTLR YTSSLEDGSL VVCERSMSGS
301: GAGPNPSTAS QFVRAKMLPS GYLIRPCEGG GSIIHIVDHL DLEAWSVPEV LQPLYKSSKL VAQKMTVAAL HHIRQIAQET SGDVTHTLGK QPAVLRAFRQ
401: KLSRGFNDAI NGFNDDGWSL MQIDGAEDLI ISVNSAKNLS TISNSTAALS LPGGILCVKA AMLLQNVSPS LMVRFLREHR SEWADFSVDA YAAASLRGDS
501: FALPGLSPSQ FSGNQTTMSL GITAENEILE IIQLEGHALS QEEASVMWRN IHLLQICNGV DDNAGEACSE LVFSPIDEMF PDDAPILSSG FRILELDAKT
601: CDRQDMLAAK RMMNLASNLE VRSSDATGCT ASSSDSRSVL IIAFQFLFES HLQGNVVTMA RQYARNVISS VQRVAMAITP SGLHGRPKST SGSPEALTLA
701: RWICQSYSFH LGDQLLKSNY HGGDSVLKQL WHHQDAILCC SLKLHPVFIF ANQAGLDMLE TTLVALQDVS LDKIFDEAGR KALCNVVPQV MQQGFALVPA
801: GIGMSTMGRH VSFEQAIAWK VLTEENTVHC LAFAFINWSF V

Best Arabidopsis Sequence Match ( AT5G60690.1 )
(BLAST)

001: MEMAVANHRE RSSDSMNRHL DSSGKYVRYT AEQVEALERV YAECPKPSSL RRQQLIRECS ILANIEPKQI KVWFQNRRCR DKQRKEASRL QSVNRKLSAM
101: NKLLMEENDR LQKQVSQLVC ENGYMKQQLT TVVNDPSCES VVTTPQHSLR DANSPAGLLS IAEETLAEFL SKATGTAVDW VQMPGMKPGP DSVGIFAISQ
201: RCNGVAARAC GLVSLEPMKI AEILKDRPSW FRDCRSLEVF TMFPAGNGGT IELVYMQTYA PTTLAPARDF WTLRYTTSLD NGSFVVCERS LSGSGAGPNA
301: ASASQFVRAE MLSSGYLIRP CDGGGSIIHI VDHLNLEAWS VPDVLRPLYE SSKVVAQKMT ISALRYIRQL AQESNGEVVY GLGRQPAVLR TFSQRLSRGF
401: NDAVNGFGDD GWSTMHCDGA EDIIVAINST KHLNNISNSL SFLGGVLCAK ASMLLQNVPP AVLIRFLREH RSEWADFNVD AYSAATLKAG SFAYPGMRPT
501: RFTGSQIIMP LGHTIEHEEM LEVVRLEGHS LAQEDAFMSR DVHLLQICTG IDENAVGACS ELIFAPINEM FPDDAPLVPS GFRVIPVDAK TGDVQDLLTA
601: NHRTLDLTSS LEVGPSPENA SGNSFSSSSS RCILTIAFQF PFENNLQENV AGMACQYVRS VISSVQRVAM AISPSGISPS LGSKLSPGSP EAVTLAQWIS
701: QSYSHHLGSE LLTIDSLGSD DSVLKLLWDH QDAILCCSLK PQPVFMFANQ AGLDMLETTL VALQDITLEK IFDESGRKAI CSDFAKLMQQ GFACLPSGIC
801: VSTMGRHVSY EQAVAWKVFA ASEENNNNLH CLAFSFVNWS FV

Arabidopsis Description

REVHomeobox-leucine zipper protein REVOLUTA [Source:UniProtKB/Swiss-Prot;Acc:Q9SE43]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.