CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d027317_P015	Maize	nucleus	98.46	97.19
Zm00001d048527_P028	Maize	nucleus	96.56	96.1
Os03t0109400-02	Rice	nucleus	91.21	91.54
TraesCS4D01G359600.1	Wheat	nucleus	86.34	86.75
TraesCS4B01G385200.1	Wheat	nucleus	86.22	86.53
HORVU4Hr1G090030.9	Barley	nucleus	86.1	86.52
TraesCS5A01G549700.1	Wheat	nucleus	84.8	85.2
EER94065	Sorghum	nucleus	83.73	84.13
HORVU5Hr1G061410.29	Barley	cytosol	28.5	83.05
GSMUA_Achr5P18530_001	Banana	cytosol, nucleus, plastid	74.7	75.42
KRH29910	Soybean	cytosol, nucleus, plastid	72.33	72.33
VIT_06s0004g02800.t01	Wine grape	nucleus	72.09	71.92
KRH25015	Soybean	cytosol, nucleus, plastid	70.78	70.87
Zm00001d049529_P001	Maize	cytosol, plastid	15.91	70.53
AT5G60690.1	Thale cress	cytosol, nucleus, plastid	69.0	69.0
Solyc11g069470.1.1	Tomato	cytosol, nucleus, plastid	68.76	68.85
Bra002458.1-P	Field mustard	cytosol, nucleus, plastid	69.24	68.59
CDY31519	Canola	cytosol, nucleus, plastid	69.24	68.59
CDY52706	Canola	cytosol, nucleus, plastid	68.76	68.36
PGSC0003DMT400020801	Potato	cytosol, nucleus, plastid	68.17	68.25
CDX99164	Canola	cytosol, nucleus, plastid	66.75	66.98
Bra038295.1-P	Field mustard	cytosol, nucleus, plastid	66.03	66.75
Bra020236.1-P	Field mustard	nucleus	66.63	66.31
CDY09191	Canola	cytosol	58.43	66.04
EER91178	Sorghum	nucleus	66.75	65.81
VIT_13s0019g04320.t01	Wine grape	nucleus	64.13	64.21
CDY31032	Canola	cytosol	57.48	63.19
CDY31031	Canola	extracellular	7.96	62.62
EES17386	Sorghum	mitochondrion	62.95	61.84
EES00115	Sorghum	cytosol, nucleus, plastid	58.55	58.41
CDY27014	Canola	cytosol, plasma membrane	5.11	57.33
CDY57624	Canola	extracellular	6.06	54.84
CDX82038	Canola	extracellular	8.19	42.59

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.2	Gene3D:3.30.530.20	EntrezGene:8059507	UniProt:A0A1Z5SCC9	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0008289	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	InterPro:IPR001356
InterPro:IPR002913	InterPro:IPR023393	InterPro:MEKHLA	EnsemblPlants:OQU93425	ProteinID:OQU93425	ProteinID:OQU93425.1
PFAM:PF00046	PFAM:PF01852	PFAM:PF08670	PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326
PANTHER:PTHR24326:SF326	SMART:SM00234	SMART:SM00389	EnsemblPlantsGene:SORBI_3001G537300	SUPFAM:SSF46689	SUPFAM:SSF55961
InterPro:START-like_dom_sf	InterPro:START_lipid-bd_dom	unigene:Sbi.13643	UniParc:UPI000B42651D	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:-:80022714..80029457

Molecular Weight (calculated)

92395.8 Da

IEP (calculated)

6.152

GRAVY (calculated)

-0.136

Length

842 amino acids

Sequence
(BLAST)

001: MAAAVAMRGG SSDSGGFDKV PGMDSGKYVR YTPEQVEVLE RLYIDCPKPS SSRRQQLLRE CPILSNIEPK QIKVWFQNRR CRDKQRKESS RLQAVNRKLT
101: AMNKLLMEEN ERLQKQVSQL VHENAHMRQQ LQNTSLANDT SCESNVTTPP NPIRDASNPS GLLAIAEETF TEFLSKATGT AIDWVQMPGM KPGPDSVGIV
201: AISHGCRGVA ARACGLVNLE PTKVIEILKD RPSWFRDCRS LEVFTMFPAG NGGTVELIYM QMYAPTTLVP ARDFWTLRYT TTMEDGSLVV CERSLSGSGG
301: GPNAASAQQF VRAEMLPSGY LVRPCEGGGS IVHIVDHLDL EAWSVPEVLR PLYESSRVVA QKMTTVALRH LRQIAQETSG EVVYALGRQP AVLRTFSQRL
401: SRGFNDAISG FNDDGWSVMG GDGIEDVVVA CNSTKKIRNN SNAGITFGAP GGIICAKASM LLQSVPPAVL VRFLREHRSE WADYNMDAYL ASSLKTSACS
501: LPGLRPMRFS GGQMIMPLAH TVENEEILEV VRLEGQPLTH DEALLSRDIH LLQFQLCTGI DEKSVGSSFQ LVFAPIDEHF PDDAPLISSG FRVIPLDMKT
601: DGVASGRTLD LASSLDVGSA APQASGDASP DDCNLRSVLT IAFQFPYEMH LQDSVATMAR QYVRGVVSAV QRVSMAISPS QSGLNAGQRM LSGFPEAATL
701: ARWVCQSYHY HLGLELLNQS DEAGEALLKM LWHHPDAVLC CSFKEKPMFT FANKAGLDML ETSLVALQDL TLDKIFDESG RKAIFSDISK LMEQGYAYLP
801: SGVCMSGMGR HVSFDQAVAW KVLGEDSNVH CLAFCFVNWS FV

Best Arabidopsis Sequence Match ( AT5G60690.1 )
(BLAST)

001: MEMAVANHRE RSSDSMNRHL DSSGKYVRYT AEQVEALERV YAECPKPSSL RRQQLIRECS ILANIEPKQI KVWFQNRRCR DKQRKEASRL QSVNRKLSAM
101: NKLLMEENDR LQKQVSQLVC ENGYMKQQLT TVVNDPSCES VVTTPQHSLR DANSPAGLLS IAEETLAEFL SKATGTAVDW VQMPGMKPGP DSVGIFAISQ
201: RCNGVAARAC GLVSLEPMKI AEILKDRPSW FRDCRSLEVF TMFPAGNGGT IELVYMQTYA PTTLAPARDF WTLRYTTSLD NGSFVVCERS LSGSGAGPNA
301: ASASQFVRAE MLSSGYLIRP CDGGGSIIHI VDHLNLEAWS VPDVLRPLYE SSKVVAQKMT ISALRYIRQL AQESNGEVVY GLGRQPAVLR TFSQRLSRGF
401: NDAVNGFGDD GWSTMHCDGA EDIIVAINST KHLNNISNSL SFLGGVLCAK ASMLLQNVPP AVLIRFLREH RSEWADFNVD AYSAATLKAG SFAYPGMRPT
501: RFTGSQIIMP LGHTIEHEEM LEVVRLEGHS LAQEDAFMSR DVHLLQICTG IDENAVGACS ELIFAPINEM FPDDAPLVPS GFRVIPVDAK TGDVQDLLTA
601: NHRTLDLTSS LEVGPSPENA SGNSFSSSSS RCILTIAFQF PFENNLQENV AGMACQYVRS VISSVQRVAM AISPSGISPS LGSKLSPGSP EAVTLAQWIS
701: QSYSHHLGSE LLTIDSLGSD DSVLKLLWDH QDAILCCSLK PQPVFMFANQ AGLDMLETTL VALQDITLEK IFDESGRKAI CSDFAKLMQQ GFACLPSGIC
801: VSTMGRHVSY EQAVAWKVFA ASEENNNNLH CLAFSFVNWS FV

Arabidopsis Description

REVHomeobox-leucine zipper protein REVOLUTA [Source:UniProtKB/Swiss-Prot;Acc:Q9SE43]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.