Factsheet for PGSC0003DMT400057688

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g079360.1.1	Tomato	nucleus	88.22	95.32
VIT_00s0203g00140.t01	Wine grape	cytosol, nucleus, plastid	41.11	59.79
KRH41951	Soybean	nucleus	53.61	52.97
KRH49930	Soybean	nucleus	52.4	51.42
CDY46377	Canola	nucleus	43.75	45.96
CDY62874	Canola	nucleus	43.51	45.59
Bra018513.1-P	Field mustard	nucleus	47.36	44.37
CDX97304	Canola	nucleus	47.36	44.37
CDX91230	Canola	nucleus	47.12	44.34
Bra029559.1-P	Field mustard	nucleus	41.83	44.05
GSMUA_Achr4P33650_001	Banana	mitochondrion	31.73	42.58
AT4G05150.1	Thale cress	nucleus	47.84	41.72
HORVU2Hr1G041600.1	Barley	mitochondrion	24.04	33.11
TraesCS2A01G207800.1	Wheat	plastid	28.37	31.81
TraesCS2D01G214600.1	Wheat	plastid	28.12	31.37
TraesCS2B01G234400.1	Wheat	plastid	27.88	30.61
Zm00001d021746_P001	Maize	plastid	27.16	29.5
EER99518	Sorghum	plastid	27.4	29.08
Zm00001d006574_P001	Maize	plastid	25.96	28.8
Os07t0556300-01	Rice	endoplasmic reticulum, vacuole	28.37	27.9
PGSC0003DMT400069641	Potato	mitochondrion	11.3	27.17
PGSC0003DMT400078796	Potato	cytosol	16.35	25.19
PGSC0003DMT400046652	Potato	plastid	11.78	24.75
PGSC0003DMT400047888	Potato	cytosol, mitochondrion, plastid	13.46	23.83
PGSC0003DMT400016330	Potato	nucleus	25.48	23.09
PGSC0003DMT400015310	Potato	nucleus	32.21	20.33
PGSC0003DMT400008036	Potato	nucleus	23.08	19.55
KXG37356	Sorghum	nucleus	16.11	19.31
PGSC0003DMT400067817	Potato	cytosol	25.24	18.85
PGSC0003DMT400097584	Potato	nucleus	16.59	18.75
PGSC0003DMT400014442	Potato	nucleus	29.33	17.81

Protein Annotations

EntrezGene:102601929	Gene3D:3.10.20.90	MapMan:35.2	ncoils:Coil	GO:GO:0003674	GO:GO:0003824
GO:GO:0004674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	GO:GO:0046777	InterPro:IPR000270
UniProt:M1C1H4	InterPro:PB1_dom	PFAM:PF00564	EnsemblPlantsGene:PGSC0003DMG400022398	PGSC:PGSC0003DMG400022398	EnsemblPlants:PGSC0003DMT400057688
PANTHER:PTHR31066	PANTHER:PTHR31066:SF4	SMART:SM00666	SUPFAM:SSF54277	UniParc:UPI0002966486	RefSeq:XP_006347158.1
SEG:seg	:	:	:	:	:

Description

ATP binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400022398]

Coordinates

chr2:+:35082333..35085757

Molecular Weight (calculated)

45119.2 Da

IEP (calculated)

5.843

GRAVY (calculated)

-0.477

Length

416 amino acids

Sequence
(BLAST)

001: MSGSIHAPPE FDSGNGDSVA STPRSEHHHH MYDDTSATQP RARFMCSFGG KIMLRPHDNQ LRYVGGDTRI VAVNRHTTFA ALLGKLSKLV GYPNINIKYQ
101: LPNEELDALI TVTTDEDLEN MMEEYDRLTQ NQKSARLRLF LFPNDSGSRA STISSILDGS SKREQWFVDA LNGGAGPGLE RGRSEVSSIV SEVPDYLFGL
201: DNSDDPPRES KFVKNKILSE PGSPAPPIVS SPYCSISSSS MTPTAAMTVM PDLPPVKTKL DKPNMTTESR ETPVASAIET GEKAVQQQQP SYPSSPLWHY
301: PAPPVQTIPV YYVPGPVQPG NIPVQLRAPY IHPFPVPPNQ LPVGYPPVSS MGQVYSGLRP VMSVDPNEFS ATARVVTEGM NYYAVRNSGV VPGYGGPVSE
401: EMQGPGGDGK SGRVSQ

Best Arabidopsis Sequence Match ( AT4G05150.1 )
(BLAST)

001: MKSNQKKQKS PNYQNPRRQR GEIEREKEAK IMASIPPPEL DNDSLASSPR SEYDSQPRVR FMCTFGGRIL PRPPDNQLCY VGGDNRMVAV HRHTTFASLL
101: SKLAKLSGKS NISVKYQLPN EDLDALISVS TDEDVENMMD EYDRVAQNQN PRASRLRLFL FTKNVAGEED NDSRASSISS LLDSSVNREQ WFLDALNLGS
201: SAAATAVSNG GSGRVFERVR SEVSSIVSEV PDYLFGLDNF DETAPPHELR DRDPRAKIQR EVSTLSDPGS PRRDVPSPYG STSSAPVMRI STPELPPPVF
301: IKPESPEPVS TPKSNPQPEQ VMQQSNLPVN SQWQYAPGPG QQVHYQGHTI HQSPVYYVPG SVPGNHMVQQ GNHMVQPGNH MVQPVQMPGQ YLQQYHHVPM
401: GYHQPQTHQM AGPGQVYGGT VRPVMMAVDG MNRTGYYGMK TPGPVQMYQH HTGMVVPGVE EQQQYRTETD SDTGRAS

Arabidopsis Description

AT4g05150/C17L7_70 [Source:UniProtKB/TrEMBL;Acc:Q940N7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.