Factsheet for VIT_00s0203g00140.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH41951	Soybean	nucleus	62.59	42.52
KRH49930	Soybean	nucleus	61.19	41.27
PGSC0003DMT400057688	Potato	nucleus	59.79	41.11
VIT_14s0068g01740.t01	Wine grape	cytosol	10.49	41.1
Solyc02g079360.1.1	Tomato	nucleus	55.24	41.04
CDY46377	Canola	nucleus	52.45	37.88
CDY62874	Canola	nucleus	52.45	37.78
Bra029559.1-P	Field mustard	nucleus	50.35	36.46
GSMUA_Achr4P33650_001	Banana	mitochondrion	38.46	35.48
CDX91230	Canola	nucleus	53.85	34.84
Bra018513.1-P	Field mustard	nucleus	53.85	34.68
CDX97304	Canola	nucleus	53.85	34.68
AT4G05150.1	Thale cress	nucleus	55.94	33.54
VIT_17s0000g07170.t01	Wine grape	cytosol	20.28	33.14
VIT_17s0000g09190.t01	Wine grape	cytosol, nucleus, plastid	18.18	32.7
VIT_02s0033g00640.t01	Wine grape	cytosol	19.58	32.0
VIT_00s0291g00050.t01	Wine grape	plastid	20.28	29.74
TraesCS2A01G207800.1	Wheat	plastid	35.31	27.22
TraesCS2D01G214600.1	Wheat	plastid	34.97	26.81
HORVU2Hr1G041600.1	Barley	mitochondrion	27.97	26.49
TraesCS2B01G234400.1	Wheat	plastid	34.97	26.39
EER99518	Sorghum	plastid	35.31	25.77
Zm00001d021746_P001	Maize	plastid	34.27	25.59
Zm00001d006574_P001	Maize	plastid	32.87	25.07
Os07t0556300-01	Rice	endoplasmic reticulum, vacuole	35.66	24.11
VIT_18s0001g08010.t01	Wine grape	nucleus	31.82	18.53
VIT_03s0097g00600.t01	Wine grape	nucleus	30.07	18.42
VIT_12s0035g01050.t01	Wine grape	extracellular, golgi	23.78	17.57
KXG37356	Sorghum	nucleus	20.28	16.71
VIT_14s0006g02490.t01	Wine grape	nucleus	29.72	16.38
VIT_01s0011g04140.t01	Wine grape	nucleus	39.86	16.36
VIT_17s0000g03180.t01	Wine grape	nucleus	35.31	15.83

Protein Annotations

ArrayExpress:VIT_00s0203g00140	EnsemblPlants:VIT_00s0203g00140.t01	EnsemblPlantsGene:VIT_00s0203g00140	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR000270	InterPro:PB1_dom	PANTHER:PTHR31066	PANTHER:PTHR31066:SF4	PFAM:PF00564
ProteinID:CCB62760.1	SEG:seg	SMART:SM00666	SUPFAM:SSF54277	UniParc:UPI0002108ED3	UniProt:F6I742
MapMan:35.2	:	:	:	:	:

Description

Octicosapeptide/Phox/Bem1p family protein [Source:TAIR;Acc:AT4G05150](projected from arabidopsis_thaliana,AT4G05150)

Coordinates

chrUn:+:12000840..12001870

Molecular Weight (calculated)

27176.8 Da

IEP (calculated)

4.962

GRAVY (calculated)

-0.278

Length

286 amino acids

Sequence
(BLAST)

001: MASHHPSELD SVASDSVASS PRSDYPTHDI QPRVRFMCSF GGKILPRPHD NQLRYVGGDT RIVAVHRATT FSGLLLKLSK LSGTTNISVK YQLPNEDLDA
101: LISVTTDEDV ENMMEEYDRL ALSGIGLKTA RLRLFLFPSD DGSRASSISS LLDGSSKREN WFFDAINGGG LERGRSEASS IVSEVPDYLF GLDNSDDIQA
201: LPRESKLKTR TALAENVSVS DPGSPAPAIT SPFCSTSSGP SVPAIPDLPP XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXHL

Best Arabidopsis Sequence Match ( AT4G05150.1 )
(BLAST)

001: MKSNQKKQKS PNYQNPRRQR GEIEREKEAK IMASIPPPEL DNDSLASSPR SEYDSQPRVR FMCTFGGRIL PRPPDNQLCY VGGDNRMVAV HRHTTFASLL
101: SKLAKLSGKS NISVKYQLPN EDLDALISVS TDEDVENMMD EYDRVAQNQN PRASRLRLFL FTKNVAGEED NDSRASSISS LLDSSVNREQ WFLDALNLGS
201: SAAATAVSNG GSGRVFERVR SEVSSIVSEV PDYLFGLDNF DETAPPHELR DRDPRAKIQR EVSTLSDPGS PRRDVPSPYG STSSAPVMRI STPELPPPVF
301: IKPESPEPVS TPKSNPQPEQ VMQQSNLPVN SQWQYAPGPG QQVHYQGHTI HQSPVYYVPG SVPGNHMVQQ GNHMVQPGNH MVQPVQMPGQ YLQQYHHVPM
401: GYHQPQTHQM AGPGQVYGGT VRPVMMAVDG MNRTGYYGMK TPGPVQMYQH HTGMVVPGVE EQQQYRTETD SDTGRAS

Arabidopsis Description

AT4g05150/C17L7_70 [Source:UniProtKB/TrEMBL;Acc:Q940N7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.