Factsheet for VIT_17s0000g07170.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
golgi 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0068g01740.t01	Wine grape	cytosol	40.0	95.89
VIT_02s0033g00640.t01	Wine grape	cytosol	91.43	91.43
VIT_18s0001g08010.t01	Wine grape	nucleus	80.57	28.72
VIT_00s0203g00140.t01	Wine grape	cytosol, nucleus, plastid	33.14	20.28
VIT_03s0097g00600.t01	Wine grape	nucleus	49.14	18.42
VIT_17s0000g09190.t01	Wine grape	cytosol, nucleus, plastid	16.57	18.24
Solyc02g091670.1.1	Tomato	cytosol	26.86	17.41
HORVU3Hr1G075060.1	Barley	cytosol, peroxisome	28.57	16.84
PGSC0003DMT400078796	Potato	cytosol	25.71	16.67
GSMUA_Achr1P20460_001	Banana	cytosol, plastid	38.86	16.43
VIT_00s0291g00050.t01	Wine grape	plastid	18.29	16.41
Zm00001d051939_P001	Maize	cytosol	39.43	12.83
EES07730	Sorghum	cytosol	41.14	12.72
Zm00001d018447_P001	Maize	extracellular	37.71	12.04
TraesCS6D01G365200.1	Wheat	cytosol	33.14	11.86
TraesCS6A01G380500.1	Wheat	cytosol	35.43	11.65
TraesCS6B01G419500.1	Wheat	cytosol	32.57	11.56
GSMUA_Achr1P05710_001	Banana	cytosol	32.0	11.5
HORVU6Hr1G089280.5	Barley	cytosol, mitochondrion, nucleus	35.43	11.25
VIT_12s0035g01050.t01	Wine grape	extracellular, golgi	23.43	10.59
VIT_17s0000g03180.t01	Wine grape	nucleus	33.14	9.09
VIT_14s0006g02490.t01	Wine grape	nucleus	26.86	9.06
VIT_01s0011g04140.t01	Wine grape	nucleus	35.43	8.9

Protein Annotations

EntrezGene:100852505	wikigene:100852505	MapMan:35.2	EMBL:AM471030	EMBL:AM472339	ProteinID:CAN60004
ProteinID:CAN60004.1	ProteinID:CAN66016	ProteinID:CAN66016.1	ProteinID:CBI15134	ProteinID:CBI15134.3	UniProt:D7SI24
EMBL:FN594950	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000270	EntrezGene:LOC100852505
wikigene:LOC100852505	InterPro:PB1_dom	PFAM:PF00564	PANTHER:PTHR31066	PANTHER:PTHR31066:SF5	SMART:SM00666
SUPFAM:SSF54277	UniParc:UPI0001BE0AFE	ArrayExpress:VIT_17s0000g07170	EnsemblPlantsGene:VIT_17s0000g07170	EnsemblPlants:VIT_17s0000g07170.t01	RefSeq:XP_003634258
RefSeq:XP_003634258.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr17:-:7980105..7980632

Molecular Weight (calculated)

19912.7 Da

IEP (calculated)

5.319

GRAVY (calculated)

-0.538

Length

175 amino acids

Sequence
(BLAST)

001: MPVAESYKDG WTRVRRRVEN RTWIGIDLEG FVRTLPWTSG EVCLKYQLPG EDLDALISVT NDEDLEHMML EYNRLCHPSN KQARLRLFLF PLTPPASTSF
101: GSNETKSERQ WFVDALNSMQ IQPLEGSSPQ AAASETNPDF LFRLDKGLAP PPPVKLLPKN YSMRSDPGSE IPYKL

Best Arabidopsis Sequence Match ( AT5G64430.1 )
(BLAST)

001: MEKFSYNSYP DSTDSSPRSR EIEFDNPPPP WDDQNQNQQQ HSYKVKFMCS YGGKIQPRPH DNQLTYVNGE TKILSVDRGI RFPVLASKLS TVCGGGDGGG
101: GEVTFKYQLP GEDLDALISV TNDDDLEHMM HEYDRLLRLS SKPARMRLFL FPASSGFGSQ SSTQSDRDRF VEALNTVPRL SESEKSVTAP PNNADFLFGS
201: EKVAAPPPPP PAEVKLPVPV ALEPPLFNDP RVIQPDHVVN PMEIQRQMQE FQRMHIRDQE QQQQQEAVYR RKSNEDGLIE TGGGYFSPPY IQNPAPPPPQ
301: QTIPQTNPQA PPMTTFWQGN HNPGVVFPTT THGLGLPEQP VYMIPSPSPS PVYHAPPPPQ PQGVIRPILT GQVNQGGYYP QVQRVASDTY REPHQSPYNV
401: AQPLQAPIGT KAAQQQQPPP PQPFTSGPPP PQYTAVPPPR QVVGLPDTSA YTQVTYTGGM GKQVYYTEAP PPQYHGVGLP VTGMSELRTG PDGKLVAMNM
501: APKVSSQSSD SAV

Arabidopsis Description

At5g64430 [Source:UniProtKB/TrEMBL;Acc:Q9FGF3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.