Factsheet for VIT_00s0291g00050.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 2
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra032936.1-P	Field mustard	plastid	56.92	62.01
CDY28543	Canola	plastid	55.9	61.93
CDY48987	Canola	plastid	56.41	61.45
CDX83621	Canola	mitochondrion	55.9	60.22
Bra025209.1-P	Field mustard	mitochondrion	54.36	58.56
CDY13638	Canola	mitochondrion	54.36	58.56
KRH29762	Soybean	plastid	34.36	56.3
VIT_17s0000g09190.t01	Wine grape	cytosol, nucleus, plastid	45.13	55.35
KRH69636	Soybean	plastid	58.97	54.25
KRH74522	Soybean	nucleus	62.56	52.81
AT1G70640.1	Thale cress	cytosol	45.13	50.57
PGSC0003DMT400047888	Potato	cytosol, mitochondrion, plastid	60.0	49.79
Solyc05g013530.2.1	Tomato	plastid	54.36	48.4
GSMUA_Achr3P19440_001	Banana	plastid	37.95	45.96
GSMUA_Achr10P...	Banana	cytosol	47.69	45.15
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	49.23	44.04
Os11t0444900-01	Rice	cytosol, plastid	46.15	41.67
GSMUA_Achr8P16400_001	Banana	plastid	43.08	41.58
TraesCS6D01G198500.1	Wheat	plastid	40.51	39.5
TraesCS6B01G245800.1	Wheat	plastid	40.0	39.39
Os11t0444700-01	Rice	cytosol	44.62	38.84
TraesCS6A01G217000.1	Wheat	plastid	40.0	38.81
EES09698	Sorghum	cytosol	44.62	36.86
GSMUA_Achr6P06660_001	Banana	plastid	44.1	35.54
Zm00001d049157_P001	Maize	plastid	41.54	35.53
VIT_14s0068g01740.t01	Wine grape	cytosol	12.82	34.25
HORVU6Hr1G055230.3	Barley	cytosol	38.97	32.62
VIT_00s0203g00140.t01	Wine grape	cytosol, nucleus, plastid	29.74	20.28
VIT_17s0000g07170.t01	Wine grape	cytosol	16.41	18.29
VIT_12s0035g01050.t01	Wine grape	extracellular, golgi	34.87	17.57
VIT_02s0033g00640.t01	Wine grape	cytosol	14.87	16.57
VIT_03s0097g00600.t01	Wine grape	nucleus	34.36	14.35
VIT_18s0001g08010.t01	Wine grape	nucleus	31.79	12.63
VIT_14s0006g02490.t01	Wine grape	nucleus	29.23	10.98
VIT_01s0011g04140.t01	Wine grape	nucleus	32.82	9.18
VIT_17s0000g03180.t01	Wine grape	nucleus	29.74	9.09

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.2	EMBL:AM449915	ProteinID:CAN80873	ProteinID:CAN80873.1	ProteinID:CCB45198
ProteinID:CCB45198.1	UniProt:F6GZ12	EMBL:FN594981	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000270	InterPro:PB1_dom	PFAM:PF00564	PANTHER:PTHR31066	PANTHER:PTHR31066:SF1	SMART:SM00666
SUPFAM:SSF54277	UniParc:UPI000198624D	ArrayExpress:VIT_00s0291g00050	EnsemblPlantsGene:VIT_00s0291g00050	EnsemblPlants:VIT_00s0291g00050.t01	unigene:Vvi.3045
unigene:Vvi.3050	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrUn:-:21824468..21827901

Molecular Weight (calculated)

21407.7 Da

IEP (calculated)

9.416

GRAVY (calculated)

-0.276

Length

195 amino acids

Sequence
(BLAST)

001: MSSLPKPSRS MVTSNQTIKF LCSYGGKILP RYPDGKLRYH GGETRVLAVD RSISFAELLV KLGELCGKSV CLRCQLPTED LDALVSVTSD EDLANLIEEY
101: DRVASPPASL KIRAFLSPPK SIKKISPPPS SASSSQLSVA SASRFTMPAA VDLCHHQISP QVPFQKSSRK VPHYGYHVHG NPSHVYLIHN GNHWQ

Best Arabidopsis Sequence Match ( AT3G26510.1 )
(BLAST)

001: MVTSPTNSTI KFLCSYGGKI LPRYPDGKLR YNGGHTRVLA VPRSVSFSEL ASKMAEMCGG VGGSITVTIR CQLPTEDLDA LVSITSDEDL VNLIEEYDLV
101: SSSSPMKIRV FLNPPKSAAG SKKSPPPLAL PSSTTTSSSS TTSSTSSSPR SPSLSKPPLP PSPPRITTVT KNPCYGCYVH RNSRNIYLVH NGNHWQ

Arabidopsis Description

Octicosapeptide/Phox/Bem1p family protein [Source:UniProtKB/TrEMBL;Acc:Q27GK5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.