Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU4Hr1G026270.1 | Barley | cytosol | 93.81 | 55.15 |
| HORVU3Hr1G008310.1 | Barley | cytosol | 8.25 | 11.19 |
| HORVU2Hr1G041600.1 | Barley | mitochondrion | 13.4 | 8.61 |
| Os02t0809100-00 | Rice | cytosol, nucleus, plastid | 10.82 | 3.95 |
| HORVU3Hr1G008420.4 | Barley | cytosol, nucleus | 16.49 | 3.78 |
| Zm00001d033564_P001 | Maize | cytosol, plastid | 4.64 | 3.75 |
| HORVU6Hr1G089280.5 | Barley | cytosol, mitochondrion, nucleus | 10.31 | 3.63 |
| HORVU6Hr1G055230.3 | Barley | cytosol | 4.12 | 3.43 |
| TraesCS4D01G029100.1 | Wheat | plastid | 4.12 | 3.25 |
| TraesCS4A01G281600.1 | Wheat | plastid | 4.12 | 3.23 |
| TraesCS4B01G031400.1 | Wheat | plastid | 4.12 | 3.16 |
| HORVU3Hr1G075060.1 | Barley | cytosol, peroxisome | 4.64 | 3.03 |
| OQU91169 | Sorghum | cytosol | 3.61 | 2.88 |
| HORVU1Hr1G065470.6 | Barley | mitochondrion | 6.19 | 2.76 |
| KXG37809 | Sorghum | cytosol | 3.09 | 2.6 |
| Zm00001d033571_P001 | Maize | cytosol | 1.03 | 1.23 |
Protein Annotations
| EnsemblPlants:HORVU3Hr1G064760.1 | EnsemblPlantsGene:HORVU3Hr1G064760 | SEG:seg | UniParc:UPI000B4604F4 | UniProt:A0A287LDA5 | MapMan:35.2 |
Description
No Description!
Coordinates
chrchr3H:+:494198593..494199879
Molecular Weight (calculated)
21069.0 Da
IEP (calculated)
11.484
GRAVY (calculated)
-0.484
Length
194 amino acids
Sequence
(BLAST)
(BLAST)
001: MYLFSRKDDE RHVHFVVQGS SDAEKEAQFI ALVNGVITPG YEPRAHSVGK SSVNDLDQLL FGISVETGPP AGRTEEAAVS IKSKPLQSIA VPPVATSGQL
101: ERTPLSSQID REKTPMLDPA CRLRVRLPPP ASLSSRRSSA SWAASLRRWI QAARVGSEGR RWACSTSAAV TLRRRSSSER RARSARASPA PPGR
101: ERTPLSSQID REKTPMLDPA CRLRVRLPPP ASLSSRRSSA SWAASLRRWI QAARVGSEGR RWACSTSAAV TLRRRSSSER RARSARASPA PPGR
001: MLDSKLRFFL QRCVVLEQAK QVHAQLVVNR YNHLEPILVH QTLHFTKEFS RNIVTYVKRI LKGFNGHDSF SWGCLVRFLS QHRKFKETVD VYIDMHNSGI
101: PPSSHAVTSV LRACGKMENM VDGKPIHAQA LKNGLCGCVY VQTGLVGLYS RLGYIELAKK AFDDIAEKNT VSWNSLLHGY LESGELDEAR RVFDKIPEKD
201: AVSWNLIISS YAKKGDMGNA CSLFSAMPLK SPASWNILIG GYVNCREMKL ARTYFDAMPQ KNGVSWITMI SGYTKLGDVQ SAEELFRLMS KKDKLVYDAM
301: IACYTQNGKP KDALKLFAQM LERNSYIQPD EITLSSVVSA NSQLGNTSFG TWVESYITEH GIKIDDLLST SLIDLYMKGG DFAKAFKMFS NLNKKDTVSY
401: SAMIMGCGIN GMATEANSLF TAMIEKKIPP NVVTFTGLLS AYSHSGLVQE GYKCFNSMKD HNLEPSADHY GIMVDMLGRA GRLEEAYELI KSMPMQPNAG
501: VWGALLLASG LHNNVEFGEI ACSHCVKLET DPTGYLSHLA MIYSSVGRWD DARTVRDSIK EKKLCKTLGC SWVEGSYH
101: PPSSHAVTSV LRACGKMENM VDGKPIHAQA LKNGLCGCVY VQTGLVGLYS RLGYIELAKK AFDDIAEKNT VSWNSLLHGY LESGELDEAR RVFDKIPEKD
201: AVSWNLIISS YAKKGDMGNA CSLFSAMPLK SPASWNILIG GYVNCREMKL ARTYFDAMPQ KNGVSWITMI SGYTKLGDVQ SAEELFRLMS KKDKLVYDAM
301: IACYTQNGKP KDALKLFAQM LERNSYIQPD EITLSSVVSA NSQLGNTSFG TWVESYITEH GIKIDDLLST SLIDLYMKGG DFAKAFKMFS NLNKKDTVSY
401: SAMIMGCGIN GMATEANSLF TAMIEKKIPP NVVTFTGLLS AYSHSGLVQE GYKCFNSMKD HNLEPSADHY GIMVDMLGRA GRLEEAYELI KSMPMQPNAG
501: VWGALLLASG LHNNVEFGEI ACSHCVKLET DPTGYLSHLA MIYSSVGRWD DARTVRDSIK EKKLCKTLGC SWVEGSYH
Arabidopsis Description
PCMP-E6Pentatricopeptide repeat-containing protein At4g22760 [Source:UniProtKB/Swiss-Prot;Acc:P0C8Q5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.