CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d033564_P001	Maize	cytosol, plastid	81.89	82.92
KXG37809	Sorghum	cytosol	52.26	54.98
TraesCS4D01G029100.1	Wheat	plastid	46.91	46.34
TraesCS4A01G281600.1	Wheat	plastid	46.5	45.56
TraesCS4B01G031400.1	Wheat	plastid	46.09	44.27
EES09698	Sorghum	cytosol	18.11	18.64
OQU78054	Sorghum	cytosol	23.87	15.85
EER99518	Sorghum	plastid	22.22	13.78
HORVU4Hr1G026270.1	Barley	cytosol	16.46	12.12
KXG37356	Sorghum	nucleus	15.23	10.66
EES07730	Sorghum	cytosol	22.63	9.72
EES00348	Sorghum	nucleus	24.28	8.9
Os02t0809100-00	Rice	cytosol, nucleus, plastid	12.76	5.84
HORVU3Hr1G064760.1	Barley	cytosol	2.88	3.61

Protein Annotations

EnsemblPlants:OQU91169	EnsemblPlantsGene:SORBI_3001G131200	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000270
InterPro:PB1_dom	PANTHER:PTHR31066	PANTHER:PTHR31066:SF1	PFAM:PF00564	ProteinID:OQU91169	ProteinID:OQU91169.1
RefSeq:XP_002464059.1	SEG:seg	SMART:SM00666	SUPFAM:SSF54277	UniParc:UPI0001A825F3	UniProt:A0A1Z5S5T2
MapMan:35.2	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:10313333..10314064

Molecular Weight (calculated)

26469.2 Da

IEP (calculated)

10.626

GRAVY (calculated)

-0.187

Length

243 amino acids

Sequence
(BLAST)

001: MAAAEAPYDG SVGRMRLMCS HGGRFLPRGP DGALRYVGGE TRVLVVPRAV TFPDLTARLS EMAGGAEVRA IRHRLADVGV QDVIVSVTSD EELAHMRDEY
101: DRLRATRPAA TFRVFVTTTA HAGSGGGVVC RRRSAAGLPP LPLDMRRARS EQALAVCAHQ QQAKQAMRRV QSTQELARAI HLQPSFHHRC NHQCCSSSQP
201: RNVCALSPMA AQPVCALPYM SKKVAPPWLI PAKATERVFA IRV

Best Arabidopsis Sequence Match ( AT3G26510.1 )
(BLAST)

001: MVTSPTNSTI KFLCSYGGKI LPRYPDGKLR YNGGHTRVLA VPRSVSFSEL ASKMAEMCGG VGGSITVTIR CQLPTEDLDA LVSITSDEDL VNLIEEYDLV
101: SSSSPMKIRV FLNPPKSAAG SKKSPPPLAL PSSTTTSSSS TTSSTSSSPR SPSLSKPPLP PSPPRITTVT KNPCYGCYVH RNSRNIYLVH NGNHWQ

Arabidopsis Description

Octicosapeptide/Phox/Bem1p family protein [Source:UniProtKB/TrEMBL;Acc:Q27GK5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.