Factsheet for TraesCS5B01G486200.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, mitochondrion

Predictor Summary:

mitochondrion 3
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G486000.1	Wheat	mitochondrion	97.63	97.63
TraesCS5A01G473300.1	Wheat	cytosol, mitochondrion, nucleus	97.63	97.05
HORVU5Hr1G112380.1	Barley	cytosol	90.21	84.92
EER93206	Sorghum	mitochondrion	64.99	67.8
Zm00001d034618_P003	Maize	extracellular, mitochondrion	63.8	67.61
Zm00001d012984_P002	Maize	mitochondrion	63.5	66.25
Os03t0818000-00	Rice	mitochondrion	66.17	59.79
GSMUA_Achr10P...	Banana	mitochondrion	36.8	41.33
KRH17098	Soybean	plastid	34.12	40.49
KRH72743	Soybean	mitochondrion	35.01	39.86
VIT_06s0004g07170.t01	Wine grape	mitochondrion	35.01	37.58
KRG92122	Soybean	plastid	14.54	35.25
Bra018336.1-P	Field mustard	nucleus	27.3	33.09
CDY10713	Canola	mitochondrion	27.3	33.09
CDY51010	Canola	nucleus	27.0	32.73
AT2G30120.5	Thale cress	plastid	28.49	32.65
Solyc09g055700.2.1	Tomato	nucleus	28.19	30.06
TraesCS2B01G249600.3	Wheat	plastid	31.45	28.57
TraesCS1B01G246000.1	Wheat	nucleus	18.4	23.4
TraesCS3B01G591900.1	Wheat	nucleus	18.1	22.85
TraesCS1B01G180300.1	Wheat	nucleus	17.8	22.64
TraesCS3B01G593200.1	Wheat	nucleus	17.8	22.47
TraesCS5B01G113500.2	Wheat	nucleus	20.47	21.23
TraesCS6B01G198100.1	Wheat	extracellular, mitochondrion, nucleus, plastid	22.26	15.82
TraesCS6B01G381000.1	Wheat	mitochondrion	21.66	15.8

Protein Annotations

EnsemblPlants:TraesCS5B01G486200.1	EnsemblPlantsGene:TraesCS5B01G486200	ncoils:Coil	PANTHER:PTHR33405	PANTHER:PTHR33405:SF6	SEG:seg
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr5B:+:657590425..657594844

Molecular Weight (calculated)

36932.0 Da

IEP (calculated)

6.758

GRAVY (calculated)

-0.707

Length

337 amino acids

Sequence
(BLAST)

001: MAGRRAPHVM SLHDSGPPLL GRAPQHPQPG DDRDEPPHGA LLHHPRGGPA QHPAVAALED RIVARDRDIQ EFLVDNQRFA ATHVALQQQL ISAQHELRAV
101: SIAGTRARME READVCNIAD QAARIEAEAR SVAGARVEIE QVHADVRVLA AARNELMDRL KGLREQLGCA QSNSAKSENV RSQIETMRRE IQKGRAAVEF
201: EKKAHADNLL QSKAMEKNMI AVASEIERLR GELLNAEKRA TAVTTAAAVT NPGYAQPYSS SEATYATMYG NPEAAYAAYG SAEATYAGTY ANSDAYSTTN
301: QAQTRTDGNQ HYMAQPVHYA QYEGQQQQQQ QHTDAQR

Best Arabidopsis Sequence Match ( AT2G30120.5 )
(BLAST)

001: MAGRDRYIPS SAVSTSSSSR LLESQLIESD RNRARSVILE DRIAIQHREI QSLLNDNQRL AVAHIGLKDQ LNVAKRELER LLETAVKVKA EGEAKVREVY
101: QNALRMEAEA RVIDGLGAEL GQVRSDVQRL GSDRQELATE LAMFDDEMAK AKPNSDRAIE VKLEIEILRG EIRKGRAALE LEKKTRASNL HHERGMEKTI
201: DHLNREIVKL EEELVDLETK AREANAAAEA APTPSPGLAA SYGNNTDDIY GGQGRQYPEA NGTHEAYRAS DCLSQDPSTP LQHPLNNTQH SSVL

Arabidopsis Description

unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14750.1); Has 275 Blast hits to 241 proteins in 42 species: Archae - 4; Bacteria - 15; Metazoa - 15; Fungi - 4; Plants - 188; Viruses - 0; Other Eukaryotes - 49 ( /.../: NCBI BLink). [Source:TAIR;Acc:AT2G30120]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.