Factsheet for PGSC0003DMT400013650

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 2
plastid 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001405
PGSC0003DMT400067114

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30540.1	PGSC0003DMT400001405	AT3G27960.1	21798944
AT2G30540.1	PGSC0003DMT400067114	AT4G32570.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g008760.1.1	Tomato	cytosol	23.73	69.31
PGSC0003DMT400029673	Potato	cytosol	20.34	56.6
KRG96386	Soybean	cytosol	18.64	54.46
KRH68125	Soybean	cytosol	18.64	54.46
Bra004424.1-P	Field mustard	cytosol	18.31	52.94
CDX80139	Canola	cytosol	18.31	52.94
CDX95739	Canola	cytosol	18.31	52.94
CDY53024	Canola	cytosol	18.31	52.94
VIT_07s0104g01390.t01	Wine grape	plasma membrane	18.31	52.94
AT2G47880.1	Thale cress	cytosol	17.97	51.96
Bra031540.1-P	Field mustard	cytosol	17.29	51.52
CDY06230	Canola	cytosol	17.29	51.52
CDY09953	Canola	cytosol	17.29	51.52
CDY10229	Canola	cytosol	17.29	51.52
CDY54881	Canola	cytosol	17.29	51.52
KRH31919	Soybean	cytosol, plasma membrane	17.63	51.49
AT3G62960.1	Thale cress	cytosol	17.63	50.98
CDX84825	Canola	cytosol	17.63	50.98
CDY23990	Canola	cytosol	17.63	50.98
AT1G06830.1	Thale cress	cytosol	16.95	50.51
KRH71536	Soybean	extracellular	17.29	50.49
CDY27469	Canola	cytosol	17.97	50.48
CDY55528	Canola	cytosol	17.97	50.48
AT2G30540.1	Thale cress	cytosol	17.29	50.0
Bra007718.1-P	Field mustard	cytosol	17.29	50.0
Bra014379.1-P	Field mustard	cytosol	17.29	50.0
CDX89162	Canola	cytosol	17.29	50.0
CDX97824	Canola	cytosol	17.29	50.0
CDY11466	Canola	cytosol	17.29	50.0
CDY52638	Canola	cytosol	17.29	50.0
CDY68061	Canola	cytosol	17.29	50.0
Bra021444.1-P	Field mustard	cytosol	17.63	49.52
HORVU3Hr1G099150.1	Barley	cytosol, extracellular	10.85	49.23
Bra003517.1-P	Field mustard	cytosol, extracellular	16.95	49.02
Bra018307.1-P	Field mustard	cytosol	16.95	49.02
Bra021641.1-P	Field mustard	cytosol	16.95	49.02
CDX76678	Canola	cytosol	16.95	49.02
CDY10745	Canola	cytosol	16.95	49.02
CDY29666	Canola	cytosol	16.95	49.02
TraesCS5B01G100900.1	Wheat	cytosol	16.27	46.6
TraesCS5A01G094700.1	Wheat	cytosol	15.93	45.63
TraesCS5D01G107200.1	Wheat	cytosol	15.93	45.63
Zm00001d040837_P001	Maize	cytosol	15.93	45.63
TraesCS5B01G049000.1	Wheat	cytosol	13.22	45.35
Zm00001d027695_P001	Maize	cytosol	15.93	45.19
HORVU5Hr1G025680.1	Barley	cytosol	15.59	44.66
Os01t0368900-01	Rice	cytosol	15.59	44.66
EES02025	Sorghum	cytosol	15.93	43.93
EES00745	Sorghum	cytosol	15.25	43.69
EES00746	Sorghum	cytosol	15.25	43.69
TraesCS3A01G461900.1	Wheat	cytosol, mitochondrion	14.92	42.31
TraesCS3A01G463000.1	Wheat	cytosol	14.92	42.31
TraesCS3B01G504700.1	Wheat	cytosol	14.92	42.31
TraesCS3D01G455600.1	Wheat	cytosol, mitochondrion	14.92	42.31
TraesCS3D01G456900.1	Wheat	cytosol	14.92	42.31
PGSC0003DMT400058374	Potato	cytosol	14.58	42.16
GSMUA_Achr8P33660_001	Banana	cytosol	14.58	41.75
HORVU5Hr1G010870.1	Barley	cytosol	14.58	41.75
Os12t0538600-00	Rice	cytosol, extracellular	14.58	41.75
TraesCS5B01G101100.1	Wheat	cytosol, extracellular	14.58	41.75
TraesCS5D01G054000.1	Wheat	cytosol	14.58	41.75
TraesCS5D01G054400.1	Wheat	cytosol	14.58	41.75
TraesCS5D01G055000.1	Wheat	cytosol	14.58	41.75
Zm00001d040836_P001	Maize	cytosol	14.58	41.75
Zm00001d042187_P001	Maize	cytosol	15.59	41.44
HORVU5Hr1G025610.1	Barley	cytosol	14.58	41.35
TraesCS3A01G462200.1	Wheat	cytosol	14.58	41.35
TraesCS3B01G506200.1	Wheat	cytosol	14.58	41.35
GSMUA_Achr11P...	Banana	cytosol, extracellular	14.24	40.78
GSMUA_Achr11P...	Banana	cytosol, extracellular	14.24	40.78
GSMUA_Achr8P09970_001	Banana	cytosol	14.24	40.78
HORVU5Hr1G010960.1	Barley	cytosol	14.24	40.78
TraesCS5A01G044100.1	Wheat	cytosol	14.24	40.78
TraesCS5A01G044400.1	Wheat	cytosol	14.24	40.78
TraesCS5A01G044900.1	Wheat	cytosol	14.24	40.78
TraesCS5A01G094900.1	Wheat	extracellular	14.24	40.78
TraesCS5B01G048300.1	Wheat	cytosol	14.24	40.78
TraesCS5B01G048600.1	Wheat	cytosol	14.24	40.78
TraesCS5B01G101600.1	Wheat	cytosol, extracellular	14.24	40.78
TraesCS5D01G054200.1	Wheat	cytosol	14.24	40.78
TraesCS5D01G054900.1	Wheat	cytosol	14.24	40.78
TraesCS5D01G107500.1	Wheat	cytosol, extracellular	14.24	40.78
TraesCS5D01G108100.1	Wheat	cytosol, extracellular	14.24	40.78
TraesCS3D01G456000.1	Wheat	cytosol, mitochondrion	14.24	40.38
TraesCS5A01G094600.1	Wheat	cytosol	14.24	40.38
TraesCS5B01G100700.1	Wheat	cytosol	14.24	40.38
Zm00001d023869_P001	Maize	cytosol	14.24	40.38
Zm00001d023870_P001	Maize	cytosol, extracellular	14.24	40.38
Zm00001d023873_P001	Maize	cytosol	14.24	40.38
EES16093	Sorghum	cytosol	14.24	40.0
GSMUA_Achr11P...	Banana	cytosol	13.9	39.81
GSMUA_Achr1P26720_001	Banana	cytosol	13.9	39.81
GSMUA_AchrUn_...	Banana	cytosol, extracellular	13.9	39.81
HORVU5Hr1G025710.1	Barley	cytosol, extracellular	13.9	39.81
TraesCS5A01G044700.1	Wheat	cytosol	13.9	39.81
TraesCS5A01G045000.1	Wheat	cytosol	13.9	39.81
TraesCS5A01G095500.1	Wheat	cytosol	13.9	39.81
TraesCS5B01G048400.1	Wheat	cytosol	13.9	39.81
TraesCS5B01G048900.1	Wheat	cytosol	13.9	39.81
TraesCS5B01G049100.1	Wheat	cytosol	13.9	39.81
TraesCS5B01G049200.1	Wheat	cytosol	13.9	39.81
TraesCS5D01G054800.1	Wheat	cytosol	13.9	39.81
Os11t0656000-00	Rice	cytosol, plastid	14.58	39.45
HORVU3Hr1G099090.1	Barley	cytosol	13.9	39.42
TraesCS3B01G505300.1	Wheat	cytosol	13.9	39.42
TraesCS3B01G506500.1	Wheat	cytosol	13.9	39.42
TraesCS5D01G106900.1	Wheat	cytosol	13.9	39.42
PGSC0003DMT400058325	Potato	cytosol	13.56	39.22
EES16092	Sorghum	cytosol	13.9	39.05
GSMUA_Achr5P00380_001	Banana	extracellular	13.56	38.84
GSMUA_Achr7P03690_001	Banana	cytosol	13.56	38.84
TraesCS5A01G044800.1	Wheat	cytosol	13.56	38.84
TraesCS5B01G101000.1	Wheat	cytosol	13.56	38.84
TraesCS5D01G055100.1	Wheat	cytosol	13.56	38.84
TraesCS5D01G107300.1	Wheat	cytosol	13.56	38.84
Os12t0538700-01	Rice	cytosol	13.56	38.46
TraesCS3A01G462900.1	Wheat	cytosol, extracellular	13.56	38.46
TraesCS3A01G463200.1	Wheat	cytosol	13.56	38.46
TraesCS3D01G457200.1	Wheat	cytosol	13.56	38.46
CDY71728	Canola	cytosol	18.31	38.03
TraesCS5A01G094800.1	Wheat	cytosol	13.22	37.86
TraesCS3A01G462800.1	Wheat	extracellular	10.51	37.8
TraesCS3B01G506000.1	Wheat	mitochondrion	10.51	37.8
Os11t0656400-00	Rice	cytosol, plastid	13.9	37.61
Os11t0656700-00	Rice	cytosol, plastid	13.9	37.61
TraesCS3B01G506400.1	Wheat	cytosol	13.22	37.5
TraesCS5A01G094500.1	Wheat	cytosol	13.22	37.5
TraesCS5B01G100600.1	Wheat	cytosol	13.22	37.5
TraesCS5D01G106800.1	Wheat	cytosol	13.22	37.5
PGSC0003DMT400029596	Potato	cytosol	12.88	37.25
PGSC0003DMT400042707	Potato	cytosol	12.88	37.25
HORVU5Hr1G033140.1	Barley	cytosol	13.22	37.14
Zm00001d023872_P001	Maize	cytosol, mitochondrion	13.22	37.14
PGSC0003DMT400079099	Potato	cytosol	12.2	37.11
GSMUA_Achr5P00370_001	Banana	cytosol	12.88	36.89
EES17138	Sorghum	cytosol	13.22	36.79
HORVU5Hr1G025690.1	Barley	cytosol	13.9	36.61
OQU79243	Sorghum	cytosol	13.22	36.45
PGSC0003DMT400027951	Potato	cytosol, plastid	12.54	36.27
PGSC0003DMT400041381	Potato	cytosol, plastid	12.54	36.27
EES16096	Sorghum	cytosol	12.88	36.19
HORVU3Hr1G099050.2	Barley	cytosol	13.22	36.11
Os01t0936000-00	Rice	cytosol	15.25	36.0
HORVU5Hr1G010950.1	Barley	cytosol	12.54	35.92
PGSC0003DMT400077393	Potato	cytosol	12.54	35.92
Bra015532.1-P	Field mustard	cytosol	17.63	35.86
PGSC0003DMT400041379	Potato	cytosol, plastid	11.53	35.79
EES16097	Sorghum	cytosol	12.88	35.51
PGSC0003DMT400013649	Potato	cytosol	12.2	35.29
PGSC0003DMT400027954	Potato	cytosol, plastid	12.2	35.29
PGSC0003DMT400041380	Potato	cytosol, plastid	12.2	35.29
Os11t0655900-01	Rice	extracellular	12.88	35.19
PGSC0003DMT400027953	Potato	cytosol, plastid	11.86	34.65
TraesCS4D01G147300.1	Wheat	cytosol	12.2	34.62
PGSC0003DMT400027946	Potato	cytosol, plastid	11.86	34.31
PGSC0003DMT400027948	Potato	cytosol, plastid	11.86	34.31
PGSC0003DMT400027950	Potato	cytosol, plastid	11.86	34.31
Os05t0149950-00	Rice	cytosol, mitochondrion	13.22	34.21
PGSC0003DMT400027952	Potato	cytosol	10.85	33.68
PGSC0003DMT400077394	Potato	cytosol	11.86	33.65
PGSC0003DMT400027947	Potato	cytosol, plastid	11.53	33.33
PGSC0003DMT400027949	Potato	cytosol, plastid	11.53	33.33
PGSC0003DMT400041382	Potato	cytosol	11.53	33.33
PGSC0003DMT400042706	Potato	cytosol	11.53	33.01
Zm00001d048720_P001	Maize	cytosol	12.2	32.43
Zm00001d048719_P001	Maize	cytosol	11.86	31.82
PGSC0003DMT400013430	Potato	cytosol	13.9	31.54
PGSC0003DMT400029525	Potato	cytosol	10.85	31.37
PGSC0003DMT400041378	Potato	cytosol, plastid	10.85	31.37
PGSC0003DMT400013435	Potato	cytosol, plastid	12.54	30.83
EES08918	Sorghum	cytosol, plastid	10.85	30.48
PGSC0003DMT400029597	Potato	cytosol	10.51	30.39
PGSC0003DMT400013427	Potato	mitochondrion, plastid	12.2	30.0
PGSC0003DMT400006076	Potato	plastid	13.56	29.85
HORVU5Hr1G025560.1	Barley	cytosol	13.22	28.68
EES08919	Sorghum	cytosol	10.17	27.52
CDX97821	Canola	mitochondrion	10.17	22.56
PGSC0003DMT400046079	Potato	cytosol	9.83	22.48
HORVU0Hr1G010190.2	Barley	cytosol	6.78	19.05

Protein Annotations

EntrezGene:102577494	MapMan:18.8.2	Gene3D:3.40.30.10	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005623	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055
GO:GO:0009987	GO:GO:0015035	GO:GO:0016020	GO:GO:0016021	GO:GO:0019725	GO:GO:0022900
GO:GO:0045454	GO:GO:0055114	InterPro:Glutaredoxin	InterPro:IPR002109	InterPro:IPR032675	InterPro:LRR_dom_sf
UniProt:M1A351	InterPro:P-loop_NTPase	PFAM:PF00462	EnsemblPlantsGene:PGSC0003DMG400005335	PGSC:PGSC0003DMG400005335	EnsemblPlants:PGSC0003DMT400013650
PFscan:PS51354	PANTHER:PTHR10168	PANTHER:PTHR10168:SF57	SUPFAM:SSF52540	SUPFAM:SSF52833	TMHMM:TMhelix
InterPro:Thioredoxin-like_sf	UniParc:UPI000295291E	:	:	:	:

Description

Truncated NBS-LRR resistance protein [Source:PGSC_GENE;Acc:PGSC0003DMG400005335]

Coordinates

chr6:-:1174214..1179998

Molecular Weight (calculated)

33457.1 Da

IEP (calculated)

7.247

GRAVY (calculated)

-0.342

Length

295 amino acids

Sequence
(BLAST)

001: MADKVQRMSS EHGVMIFSKS TCCLCYAVTI LFRDLGVDPY VHELDHDSDG KDMEKALMRM GCKTTLAYKV YNDKSISSHF DLHAVGQEYD EKKLLDKFFN
101: QVSNSDSKLS ENIDVADKLR NGKRKFHTDL LDREKRAFGK ESCPDGLLDV GKEIARKCRG FPLVADLIAG VIAGLEKKNT SACKKMVTIL FALSAYFSLI
201: YVHHRLMSLN LSHSTTRIPN LGKMSRHSYK LQWLWVVDYI EDTGLEEIAD YCKDLEELKD SGRTEVVMPD SVWTVDRDAA ASTSYRTRNC FMASA

Best Arabidopsis Sequence Match ( AT2G47880.1 )
(BLAST)

001: MDKVMRMSSE KGVVIFTKSS CCLCYAVQIL FRDLRVQPTI HEIDNDPDCR EIEKALLRLG CSTAVPAVFV GGKLVGSTNE VMSLHLSGSL VPLIKPYQSI
101: LY

Arabidopsis Description

GRXC13Glutaredoxin-C13 [Source:UniProtKB/Swiss-Prot;Acc:O82255]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.