Factsheet for VIT_10s0003g03940.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
vacuole 2
mitochondrion 4
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	vacuole
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g036570.1.1	Tomato	cytosol	47.49	67.46
PGSC0003DMT400046079	Potato	cytosol	48.04	66.67
GSMUA_Achr4P22980_001	Banana	endoplasmic reticulum, extracellular	38.55	65.09
KRH58685	Soybean	cytosol	38.55	63.3
GSMUA_Achr7P01150_001	Banana	endoplasmic reticulum, extracellular	37.43	62.04
KRH12792	Soybean	plastid	41.34	57.36
KRH37754	Soybean	plastid	39.11	52.63
TraesCS2A01G251700.1	Wheat	cytosol	40.22	52.55
TraesCS2D01G252500.1	Wheat	cytosol	40.22	52.55
TraesCS2B01G271600.1	Wheat	cytosol	40.22	52.55
VIT_05s0020g01760.t01	Wine grape	cytosol	27.93	49.02
VIT_14s0068g01570.t01	Wine grape	cytosol	32.96	47.97
VIT_05s0020g01750.t01	Wine grape	cytosol	26.82	46.6
VIT_07s0104g01400.t01	Wine grape	cytosol	25.7	45.1
VIT_07s0104g01390.t01	Wine grape	plasma membrane	25.14	44.12
Zm00001d018802_P001	Maize	cytosol	38.55	43.4
EER95872	Sorghum	cytosol	39.66	42.77
Os07t0151100-01	Rice	cytosol	40.78	38.02
VIT_01s0146g00220.t01	Wine grape	cytosol	32.96	37.82
VIT_07s0104g01420.t01	Wine grape	cytosol	21.79	36.79
HORVU2Hr1G060300.1	Barley	cytosol	31.28	32.0

Protein Annotations

EntrezGene:100263456	wikigene:100263456	MapMan:18.8.2	Gene3D:3.40.30.10	ProteinID:CBI30933	ProteinID:CBI30933.3
UniProt:D7TKB1	EMBL:FN595992	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0015035
GO:GO:0019725	GO:GO:0022900	GO:GO:0045454	GO:GO:0055114	InterPro:GlrX-like_pln_2	InterPro:Glutaredoxin
InterPro:Glutaredoxin_subgr	InterPro:IPR002109	EntrezGene:LOC100263456	wikigene:LOC100263456	PFAM:PF00462	PRINTS:PR00160
PFscan:PS51354	PANTHER:PTHR10168	PANTHER:PTHR10168:SF86	SUPFAM:SSF52833	TIGRFAMs:TIGR02189	InterPro:Thioredoxin-like_sf
UniParc:UPI0001BE3504	ArrayExpress:VIT_10s0003g03940	EnsemblPlantsGene:VIT_10s0003g03940	EnsemblPlants:VIT_10s0003g03940.t01	RefSeq:XP_002278846	RefSeq:XP_002278846.1

Description

No Description!

Coordinates

chr10:-:6712174..6713150

Molecular Weight (calculated)

19630.1 Da

IEP (calculated)

6.895

GRAVY (calculated)

0.113

Length

179 amino acids

Sequence
(BLAST)

001: MIRSPYSLYC RLVLLLQNPT NTATRYSLPS YVLKSNSWNL KLYCSLEPES MQMKESGMIE EQLGMDGEAH EKPETTYEAV RRLGSSNAVV VFSLSGCCMC
101: HVMKQLLFGL GVGPTIVELD KEKYGSEMQS VLYQLAGGQH SVPAVFVGGK FLGGIETLMS CHINGTLVPL LKAAGALWL

Best Arabidopsis Sequence Match ( AT5G14070.1 )
(BLAST)

001: MQYKTETRGS LSYNNNSKVM NNMNVFPSET LAKIESMAAE NAVVIFSVST CCMCHAIKRL FRGMGVSPAV HELDLLPYGV EIHRALLRLL GCSSGGATSP
101: GALPVVFIGG KMVGAMERVM ASHINGSLVP LLKDAGALWL

Arabidopsis Description

GRXC8Glutaredoxin-C8 [Source:UniProtKB/Swiss-Prot;Acc:Q8LF89]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.