Factsheet for TraesCS5B01G284900.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, vacuole

Predictor Summary:

nucleus 1
extracellular 4
endoplasmic reticulum 4
vacuole 5
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plasma membrane, vacuole
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G293000.1	Wheat	golgi, plasma membrane, vacuole	97.35	97.35
TraesCS5B01G285000.1	Wheat	plasma membrane	88.86	86.56
TraesCS5B01G283500.1	Wheat	extracellular, plasma membrane, vacuole	61.27	62.77
TraesCS5B01G283600.1	Wheat	plasma membrane	57.56	59.62
PGSC0003DMT400017300	Potato	plasma membrane	14.32	54.55
TraesCS3B01G462900.1	Wheat	plasma membrane	50.66	51.9
PGSC0003DMT400046253	Potato	plasma membrane	44.3	47.04
Solyc01g068410.2.1	Tomato	extracellular, plasma membrane	44.3	46.65
PGSC0003DMT400017301	Potato	golgi, plasma membrane	20.42	43.5
VIT_04s0023g00450.t01	Wine grape	golgi, plasma membrane	41.38	43.21
Solyc04g056620.1.1	Tomato	plasma membrane	35.01	38.04
TraesCS3B01G276500.1	Wheat	plasma membrane	34.75	36.69
PGSC0003DMT400027309	Potato	extracellular, plasma membrane, vacuole	31.03	36.45
TraesCS7B01G359300.1	Wheat	plasma membrane, vacuole	32.89	31.08
TraesCS3B01G361500.1	Wheat	plasma membrane	34.48	30.37
TraesCS7B01G331500.1	Wheat	cytosol, plasma membrane, vacuole	31.57	29.31
TraesCS4B01G130100.1	Wheat	plasma membrane	41.91	27.92
TraesCS7B01G359200.1	Wheat	plasma membrane	28.91	27.74
TraesCS1B01G445400.1	Wheat	golgi, plasma membrane, vacuole	40.85	25.8
TraesCS7B01G095500.1	Wheat	plasma membrane	39.79	25.6
TraesCS7B01G398100.1	Wheat	golgi, plasma membrane, vacuole	41.91	25.0
TraesCS3B01G260700.1	Wheat	plasma membrane	34.48	21.35
TraesCS6B01G337300.3	Wheat	plasma membrane	28.38	17.98

Protein Annotations

EnsemblPlants:TraesCS5B01G284900.1	EnsemblPlantsGene:TraesCS5B01G284900	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0055085	InterPro:Auxin_eff_plant	InterPro:Mem_trans	PANTHER:PTHR31752	PANTHER:PTHR31752:SF15
PFAM:PF03547	SEG:seg	TIGRFAMs:TIGR00946	TMHMM:TMhelix	MapMan:11.2.4.1.1	MapMan:24.2.5.2.1

Description

No Description!

Coordinates

chr5B:+:470435919..470439363

Molecular Weight (calculated)

40515.7 Da

IEP (calculated)

8.673

GRAVY (calculated)

0.613

Length

377 amino acids

Sequence
(BLAST)

001: MIGWGDVYKV VSAMAPLYFA LGLGYASVRW WKFFTRDQCD AVNRLVIYFA LPFFAFDFNA HAGTFAAGYR VLAADAVAKL VVVLALAGWV AYCRWRHWIR
101: APKAPPASSA WPGPSWSWCI TGYSLGTLNN GLFVGVPLLD AMYGKWARDI VVQLSVLQAV VWLPLLVVVF EARQAWLEAT SAPARDGGAR EEGDQAALGS
201: DDGDGRKTAT TGCAFWARLL RTVGVKVGGN PNVYASLLGV LWSSVANRWH LEMPDIIDGS ISIMSRTGLG IGMFNTGLFI GLQDKLVVCR PGLTALGMAM
301: RFVAAPAATA VGALLLGLRG DLLRVAILQA ALPQSVGAFI FALEYDLHAD VLSTVVIVGT LASLPVIITY YIVLGLL

Best Arabidopsis Sequence Match ( AT1G77110.1 )
(BLAST)

001: MITGNEFYTV MCAMAPLYFA MFVAYGSVKW CKIFTPAQCS GINRFVSVFA VPVLSFHFIS QNNPYKMDTM FILADTLSKI FVFVLLSLWA VFFKAGGLDW
101: LITLFSIATL PNTLVMGIPL LQAMYGDYTQ TLMVQLVVLQ CIIWYTLLLF LFELRAARLL IRAEFPGQAA GSIAKIQVDD DVISLDGMDP LRTETETDVN
201: GRIRLRIRRS VSSVPDSVMS SSLCLTPRAS NLSNAEIFSV NTPNNRFFHG GGGSGTLQFY NGSNEIMFCN GDLGGFGFTR PGLGASPRRL SGYASSDAYS
301: LQPTPRASNF NELDVNGNGT PVWMKSPAAG RIYRQSSPKM MWESGQRHAA KDINGSVPEK EISFRDALKA APQATAAGGG ASMEEGAAGK DTTPVAAIGK
401: QEMPSAIVMM RLILTVVGRK LSRNPNTYSS LLGLVWSLIS FKWNIPMPNI VDFSIKIISD AGLGMAMFSL GLFMALQPKM IPCGAKKATM GMLIRFISGP
501: LFMAGASLLV GLRGSRLHAA IVQAALPQGI VPFVFAREYN LHPDLLSTLV IFGMIVSLPV TILYYVLLGL

Arabidopsis Description

PIN6Auxin efflux carrier component [Source:UniProtKB/TrEMBL;Acc:A0A178W8W8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.