Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- peroxisome 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 3
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY31633 | Canola | plasma membrane | 99.02 | 99.2 |
| Bra005402.1-P | Field mustard | plasma membrane | 98.89 | 99.08 |
| AT2G34660.1 | Thale cress | plasma membrane | 92.82 | 93.16 |
| CDX90247 | Canola | plasma membrane | 86.49 | 86.76 |
| CDY12054 | Canola | plasma membrane | 86.37 | 86.69 |
| CDY09591 | Canola | plasma membrane | 86.13 | 86.39 |
| CDY02289 | Canola | plasma membrane | 85.7 | 86.01 |
| KRH11151 | Soybean | plasma membrane | 76.3 | 76.73 |
| KRH21096 | Soybean | endoplasmic reticulum | 76.06 | 76.48 |
| Solyc08g006880.2.1 | Tomato | nucleus | 75.26 | 75.4 |
| GSMUA_Achr8P33250_001 | Banana | endoplasmic reticulum, golgi, plastid | 57.7 | 73.67 |
| EES12878 | Sorghum | plasma membrane | 72.74 | 72.83 |
| CDY72149 | Canola | cytosol, peroxisome, plasma membrane | 27.26 | 72.55 |
| Zm00001d002275_P029 | Maize | plasma membrane | 72.38 | 72.38 |
| Os04t0620000-01 | Rice | plasma membrane | 71.82 | 71.91 |
| HORVU2Hr1G103620.1 | Barley | plasma membrane | 71.82 | 71.87 |
| TraesCS1A01G404300.1 | Wheat | plasma membrane | 68.2 | 69.14 |
| CDX98202 | Canola | plasma membrane | 61.57 | 68.75 |
| CDY09589 | Canola | plasma membrane | 60.77 | 66.31 |
| GSMUA_Achr7P03410_001 | Banana | endoplasmic reticulum, plasma membrane, plastid | 57.95 | 64.88 |
| CDY02290 | Canola | plasma membrane | 62.12 | 62.66 |
| CDX77595 | Canola | extracellular | 5.89 | 47.76 |
| CDX82557 | Canola | plasma membrane | 12.95 | 42.03 |
| CDY71198 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane | 13.01 | 41.9 |
| CDY51899 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 13.38 | 40.07 |
| CDY39771 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 23.88 | 36.36 |
| CDX82552 | Canola | plasma membrane | 26.64 | 35.26 |
| CDX71911 | Canola | plasma membrane | 24.86 | 34.91 |
| CDY06021 | Canola | plasma membrane | 24.74 | 34.62 |
| CDY23680 | Canola | plasma membrane | 28.05 | 34.08 |
| CDY63884 | Canola | plasma membrane | 25.72 | 34.04 |
| CDY64080 | Canola | plasma membrane | 26.4 | 32.8 |
| CDX98408 | Canola | plasma membrane | 26.21 | 32.52 |
| CDX76656 | Canola | plasma membrane, plastid | 29.04 | 31.98 |
| CDY43395 | Canola | plasma membrane | 28.73 | 31.95 |
| CDY43277 | Canola | plastid | 29.34 | 31.91 |
| CDY11440 | Canola | plastid | 28.79 | 31.58 |
| CDX93660 | Canola | plastid | 29.4 | 31.55 |
| CDY37305 | Canola | plasma membrane | 27.32 | 31.34 |
| CDY27531 | Canola | plasma membrane | 27.26 | 31.27 |
| CDX89842 | Canola | plasma membrane | 28.73 | 31.03 |
| CDY18207 | Canola | plasma membrane | 28.67 | 30.95 |
| CDY03309 | Canola | golgi | 27.01 | 30.66 |
| CDY06441 | Canola | plasma membrane | 27.44 | 30.51 |
| CDY01519 | Canola | plasma membrane | 26.76 | 30.47 |
| CDY44021 | Canola | plastid | 27.5 | 25.85 |
| CDY23565 | Canola | plastid | 27.5 | 25.79 |
Protein Annotations
| Gene3D:1.20.1560.10 | MapMan:24.1.3.1.2 | Gene3D:3.40.50.300 | GO:A0A078D577 | InterPro:AAA+_ATPase | InterPro:ABC1_TM_dom |
| InterPro:ABC1_TM_sf | InterPro:ABC_transporter-like | InterPro:ABC_transporter_CS | EnsemblPlants:CDX84290 | ProteinID:CDX84290 | ProteinID:CDX84290.1 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005215 | GO:GO:0005488 | GO:GO:0005524 |
| GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016787 |
| GO:GO:0016887 | GO:GO:0042626 | GO:GO:0055085 | EnsemblPlantsGene:GSBRNA2T00141386001 | InterPro:IPR003439 | InterPro:IPR011527 |
| InterPro:IPR036640 | InterPro:P-loop_NTPase | PFAM:PF00005 | PFAM:PF00664 | ScanProsite:PS00211 | PFscan:PS50893 |
| PFscan:PS50929 | PANTHER:PTHR24223 | PANTHER:PTHR24223:SF251 | SMART:SM00382 | SUPFAM:SSF52540 | SUPFAM:SSF90123 |
| TMHMM:TMhelix | UniParc:UPI0004EF4286 | SEG:seg | : | : | : |
Description
BnaC04g10520D
Coordinates
chrLK031836:-:1488193..1496899
Molecular Weight (calculated)
182983.0 Da
IEP (calculated)
6.183
GRAVY (calculated)
0.032
Length
1629 amino acids
Sequence
(BLAST)
(BLAST)
0001: MGFEEALEWY CKPAPYGVWT RQVDNAFGAY TPCATDSFVL VISHVVLLVL CLYRIWRTMK DHKVERFCMR SKLYSYLLAL LAAYGTAEPL FRLIMGVSVL
0101: DLDGDGLPPY EAFGLGVEAL TWGSVMIMIC METKIYIHEL RWYVRFAVIY ALVGDMVLLN LVLSVKEFYT SYVLYLYISE VAVQVLFGIL LFVHLPNLDP
0201: YPGYMPVGSE TVDDHDHEYE ELSEGQQICP ERHANIFDKI FFSWINPLMT LGSKRPLTET DVWHLDTWDQ TETLFTSFQQ SWDKELQKPK PWLLRALNSS
0301: LGGRFWWGGF WKIGNDCSQF VGPLLLNQLL KSMQQDEPAY MGYIYAFSIF VGVVLGVLCE AQYFQNVMRV GYRLRSALIA AVFRKSLRLT NEGRRKFQTG
0401: KITNLMTTDA ESLQQICQSL HTMWSAPFRI IVALILLYQQ LGVASLIGAL LLVLMFPLQT IIISKMQNLT KEGLQRTDKR IGLMNEVLAA MDTVKCYAWE
0501: NSFQSKVQTV RDDELSWFRK SQLLGALNMF ILNSIPVLVT IVSFGVFTLL GGDLTPARAF TSLSLFAVLR FPLFMLPNII TQVVNANVSL KRLEEVLATE
0601: ERILLPNPPI EPGQPAISIR NGFFSWDAKG DRPTLSNINL DVPLGSLVAV VGSTGEGKTS LISAILGELP ATSDAMVTLR GSVAYVPQVS WIFNATVRDN
0701: ILFGSPFDRE RYERVLDVTA LKHDLELLPG GDLTEIGERG VNISGGQKQR VSMARAVYSN SDVFIFDDPL SALDAHVGQQ VFEKCIKREL GNKTRVLVTN
0801: QLHFLSQVDR IILVHEGTVK EEGTYEELSN NGPLFQRLME NAGKVEEYSE ENGEAEAVQT AVAPLTNGTT NTLQMNIGTD DKKPKEESKR GKSVLIKQEE
0901: RETGVVSWRV LKRYQDALGG AWVVMMLLLC YVLTEVFRVT SSTWLSEWTD AGTPKSHGPI FYNLIYALLS FGQVLVTLTN SYWLIMSSLY AAKRLHDNML
1001: HSILRAPMSF FHTNPLGRII NRFAKDLGDI DRTVAVFVNM FMGQVSQLLS TVVLIGIVST LSLWAIMPLL VLFYGAYLYY QNTAREVKRM DSITRSPVYA
1101: QFGEALNGLS TIRAYKAYDR MAEINGRSMD NNIRFTLVNM SANRWLGIRL ETLGGLMIWL TASFAVMQNG KAENQQAFAS TMGLLLSYAL NITSLLTGVL
1201: RLASLAENSL NAVERVGNYI EIPSEAPLVI ESNRPPPGWP SAGSIKFEDA VLRYRPQLPP VLHGVSFFIH PTDKVGIVGR TGAGKSSLLN ALFRIVELEK
1301: GRILIDECDI GKFGLMDLRK VLGIIPQSPV LFSGTVRFNL DPFGEHNDAD LWESLERAHL KDTIRRNPLG LDAEVSEAGE NFSVGQRQLL SLSRALLRRS
1401: KILVLDEATA AVDVRTDALI QKTIREEFKS CTMLIIAHRL NTIIDCDKIL VLDSGRVQEF STPENLLSNE RSSFSKMVQS TGAANAEYLR SLVLENKRER
1501: DGDDSQQPLQ GQRKWLASSR WAAAAQFALG VSLTSSHNDL QILEIEDDGS ILKRTKDAVV TLRNVLEGKH DKEIAESLEE HNISRDGWLS SLYRMVEGLA
1601: VMSRLARNRM QQPGYNLEGN SFDWDNIEM
0101: DLDGDGLPPY EAFGLGVEAL TWGSVMIMIC METKIYIHEL RWYVRFAVIY ALVGDMVLLN LVLSVKEFYT SYVLYLYISE VAVQVLFGIL LFVHLPNLDP
0201: YPGYMPVGSE TVDDHDHEYE ELSEGQQICP ERHANIFDKI FFSWINPLMT LGSKRPLTET DVWHLDTWDQ TETLFTSFQQ SWDKELQKPK PWLLRALNSS
0301: LGGRFWWGGF WKIGNDCSQF VGPLLLNQLL KSMQQDEPAY MGYIYAFSIF VGVVLGVLCE AQYFQNVMRV GYRLRSALIA AVFRKSLRLT NEGRRKFQTG
0401: KITNLMTTDA ESLQQICQSL HTMWSAPFRI IVALILLYQQ LGVASLIGAL LLVLMFPLQT IIISKMQNLT KEGLQRTDKR IGLMNEVLAA MDTVKCYAWE
0501: NSFQSKVQTV RDDELSWFRK SQLLGALNMF ILNSIPVLVT IVSFGVFTLL GGDLTPARAF TSLSLFAVLR FPLFMLPNII TQVVNANVSL KRLEEVLATE
0601: ERILLPNPPI EPGQPAISIR NGFFSWDAKG DRPTLSNINL DVPLGSLVAV VGSTGEGKTS LISAILGELP ATSDAMVTLR GSVAYVPQVS WIFNATVRDN
0701: ILFGSPFDRE RYERVLDVTA LKHDLELLPG GDLTEIGERG VNISGGQKQR VSMARAVYSN SDVFIFDDPL SALDAHVGQQ VFEKCIKREL GNKTRVLVTN
0801: QLHFLSQVDR IILVHEGTVK EEGTYEELSN NGPLFQRLME NAGKVEEYSE ENGEAEAVQT AVAPLTNGTT NTLQMNIGTD DKKPKEESKR GKSVLIKQEE
0901: RETGVVSWRV LKRYQDALGG AWVVMMLLLC YVLTEVFRVT SSTWLSEWTD AGTPKSHGPI FYNLIYALLS FGQVLVTLTN SYWLIMSSLY AAKRLHDNML
1001: HSILRAPMSF FHTNPLGRII NRFAKDLGDI DRTVAVFVNM FMGQVSQLLS TVVLIGIVST LSLWAIMPLL VLFYGAYLYY QNTAREVKRM DSITRSPVYA
1101: QFGEALNGLS TIRAYKAYDR MAEINGRSMD NNIRFTLVNM SANRWLGIRL ETLGGLMIWL TASFAVMQNG KAENQQAFAS TMGLLLSYAL NITSLLTGVL
1201: RLASLAENSL NAVERVGNYI EIPSEAPLVI ESNRPPPGWP SAGSIKFEDA VLRYRPQLPP VLHGVSFFIH PTDKVGIVGR TGAGKSSLLN ALFRIVELEK
1301: GRILIDECDI GKFGLMDLRK VLGIIPQSPV LFSGTVRFNL DPFGEHNDAD LWESLERAHL KDTIRRNPLG LDAEVSEAGE NFSVGQRQLL SLSRALLRRS
1401: KILVLDEATA AVDVRTDALI QKTIREEFKS CTMLIIAHRL NTIIDCDKIL VLDSGRVQEF STPENLLSNE RSSFSKMVQS TGAANAEYLR SLVLENKRER
1501: DGDDSQQPLQ GQRKWLASSR WAAAAQFALG VSLTSSHNDL QILEIEDDGS ILKRTKDAVV TLRNVLEGKH DKEIAESLEE HNISRDGWLS SLYRMVEGLA
1601: VMSRLARNRM QQPGYNLEGN SFDWDNIEM
0001: MGFEFIEWYC KPVPNGVWTK QVANAFGAYT PCATDSFVLG ISQLVLLVLC LYRIWLALKD HKVERFCLRS RLYNYFLALL AAYATAEPLF RLIMGISVLD
0101: FDGPGLPPFE AFGLGVKAFA WGAVMVMILM ETKIYIRELR WYVRFAVIYA LVGDMVLLNL VLSVKEYYSS YVLYLYTSEV GAQVLFGILL FMHLPNLDTY
0201: PGYMPVRSET VDDYEYEEIS DGQQICPEKH ANIFDKIFFS WMNPLMTLGS KRPLTEKDVW YLDTWDQTET LFTSFQHSWD KELQKPQPWL LRALNNSLGG
0301: RFWWGGFWKI GNDCSQFVGP LLLNQLLKSM QEDAPAWMGY IYAFSIFVGV VFGVLCEAQY FQNVMRVGYR LRSALIAAVF RKSLRLTNEG RRKFQTGKIT
0401: NLMTTDAESL QQICQSLHTM WSAPFRIIIA LILLYQQLGV ASLIGALLLV LMFPLQTVII SKMQKLTKEG LQRTDKRIGL MNEVLAAMDT VKCYAWENSF
0501: QSKVQTVRDD ELSWFRKSQL LGALNMFILN SIPVLVTIVS FGVFTLLGGD LTPARAFTSL SLFAVLRFPL FMLPNIITQV VNANVSLKRL EEVLATEERI
0601: LLPNPPIEPG EPAISIRNGY FSWDSKGDRP TLSNINLDVP LGSLVAVVGS TGEGKTSLIS AILGELPATS DAIVTLRGSV AYVPQVSWIF NATVRDNILF
0701: GSPFDREKYE RAIDVTSLKH DLELLPGGDL TEIGERGVNI SGGQKQRVSM ARAVYSNSDV YIFDDPLSAL DAHVGQQVFE KCIKRELGQK TRVLVTNQLH
0801: FLSQVDRIVL VHEGTVKEEG TYEELSSNGP LFQRLMENAG KVEEYSEENG EAEADQTAEQ PVANGNTNGL QMDGSDDKKS KEGNKKGGKS VLIKQEERET
0901: GVVSWRVLKR YQDALGGAWV VMMLLLCYVL TEVFRVTSST WLSEWTDAGT PKSHGPLFYN LIYALLSFGQ VLVTLTNSYW LIMSSLYAAK KLHDNMLHSI
1001: LRAPMSFFHT NPLGRIINRF AKDLGDIDRT VAVFVNMFMG QVSQLLSTVV LIGIVSTLSL WAIMPLLVLF YGAYLYYQNT AREVKRMDSI SRSPVYAQFG
1101: EALNGLSTIR AYKAYDRMAD INGRSMDNNI RFTLVNMGAN RWLGIRLETL GGLMIWLTAS FAVMQNGRAE NQQAFASTMG LLLSYALNIT SLLTGVLRLA
1201: SLAENSLNAV ERVGNYIEIP PEAPPVIENN RPPPGWPSSG SIKFEDVVLR YRPQLPPVLH GVSFFIHPTD KVGIVGRTGA GKSSLLNALF RIVEVEKGRI
1301: LIDDCDVGKF GLMDLRKVLG IIPQSPVLFS GTVRFNLDPF GEHNDADLWE SLERAHLKDT IRRNPLGLDA EVSEAGENFS VGQRQLLSLS RALLRRSKIL
1401: VLDEATAAVD VRTDALIQKT IREEFKSCTM LIIAHRLNTI IDCDKILVLD SGRVQEFSSP ENLLSNEGSS FSKMVQSTGA ANAEYLRSLV LDNKRAKDDS
1501: HHLQGQRKWL ASSRWAAAAQ FALAASLTSS HNDLQSLEIE DDSSILKRTN DAVVTLRSVL EGKHDKEIAE SLEEHNISRE GWLSSLYRMV EGLAVMSRLA
1601: RNRMQQPDYN FEGNTFDWDN VEM
0101: FDGPGLPPFE AFGLGVKAFA WGAVMVMILM ETKIYIRELR WYVRFAVIYA LVGDMVLLNL VLSVKEYYSS YVLYLYTSEV GAQVLFGILL FMHLPNLDTY
0201: PGYMPVRSET VDDYEYEEIS DGQQICPEKH ANIFDKIFFS WMNPLMTLGS KRPLTEKDVW YLDTWDQTET LFTSFQHSWD KELQKPQPWL LRALNNSLGG
0301: RFWWGGFWKI GNDCSQFVGP LLLNQLLKSM QEDAPAWMGY IYAFSIFVGV VFGVLCEAQY FQNVMRVGYR LRSALIAAVF RKSLRLTNEG RRKFQTGKIT
0401: NLMTTDAESL QQICQSLHTM WSAPFRIIIA LILLYQQLGV ASLIGALLLV LMFPLQTVII SKMQKLTKEG LQRTDKRIGL MNEVLAAMDT VKCYAWENSF
0501: QSKVQTVRDD ELSWFRKSQL LGALNMFILN SIPVLVTIVS FGVFTLLGGD LTPARAFTSL SLFAVLRFPL FMLPNIITQV VNANVSLKRL EEVLATEERI
0601: LLPNPPIEPG EPAISIRNGY FSWDSKGDRP TLSNINLDVP LGSLVAVVGS TGEGKTSLIS AILGELPATS DAIVTLRGSV AYVPQVSWIF NATVRDNILF
0701: GSPFDREKYE RAIDVTSLKH DLELLPGGDL TEIGERGVNI SGGQKQRVSM ARAVYSNSDV YIFDDPLSAL DAHVGQQVFE KCIKRELGQK TRVLVTNQLH
0801: FLSQVDRIVL VHEGTVKEEG TYEELSSNGP LFQRLMENAG KVEEYSEENG EAEADQTAEQ PVANGNTNGL QMDGSDDKKS KEGNKKGGKS VLIKQEERET
0901: GVVSWRVLKR YQDALGGAWV VMMLLLCYVL TEVFRVTSST WLSEWTDAGT PKSHGPLFYN LIYALLSFGQ VLVTLTNSYW LIMSSLYAAK KLHDNMLHSI
1001: LRAPMSFFHT NPLGRIINRF AKDLGDIDRT VAVFVNMFMG QVSQLLSTVV LIGIVSTLSL WAIMPLLVLF YGAYLYYQNT AREVKRMDSI SRSPVYAQFG
1101: EALNGLSTIR AYKAYDRMAD INGRSMDNNI RFTLVNMGAN RWLGIRLETL GGLMIWLTAS FAVMQNGRAE NQQAFASTMG LLLSYALNIT SLLTGVLRLA
1201: SLAENSLNAV ERVGNYIEIP PEAPPVIENN RPPPGWPSSG SIKFEDVVLR YRPQLPPVLH GVSFFIHPTD KVGIVGRTGA GKSSLLNALF RIVEVEKGRI
1301: LIDDCDVGKF GLMDLRKVLG IIPQSPVLFS GTVRFNLDPF GEHNDADLWE SLERAHLKDT IRRNPLGLDA EVSEAGENFS VGQRQLLSLS RALLRRSKIL
1401: VLDEATAAVD VRTDALIQKT IREEFKSCTM LIIAHRLNTI IDCDKILVLD SGRVQEFSSP ENLLSNEGSS FSKMVQSTGA ANAEYLRSLV LDNKRAKDDS
1501: HHLQGQRKWL ASSRWAAAAQ FALAASLTSS HNDLQSLEIE DDSSILKRTN DAVVTLRSVL EGKHDKEIAE SLEEHNISRE GWLSSLYRMV EGLAVMSRLA
1601: RNRMQQPDYN FEGNTFDWDN VEM
Arabidopsis Description
ABCC2ABC transporter C family member 2 [Source:UniProtKB/Swiss-Prot;Acc:Q42093]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.