CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 3
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	endoplasmic reticulum, plasma membrane, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY64080	Canola	plasma membrane	96.73	96.87
AT3G60970.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	72.89	90.88
PGSC0003DMT400011214	Potato	cytosol	9.98	78.92
AT3G60160.1	Thale cress	plasma membrane	90.02	78.49
PGSC0003DMT400080270	Potato	mitochondrion	57.12	65.39
CDY71198	Canola	endoplasmic reticulum, mitochondrion, plasma membrane	23.84	61.86
CDX82557	Canola	plasma membrane	23.53	61.55
CDY51899	Canola	endoplasmic reticulum, plasma membrane, vacuole	24.52	59.19
VIT_15s0021g00220.t01	Wine grape	plasma membrane	67.4	58.61
KRH48930	Soybean	endoplasmic reticulum	64.05	55.95
PGSC0003DMT400056413	Potato	mitochondrion	58.03	54.55
KRH66359	Soybean	plasma membrane	62.15	53.61
Solyc10g024420.1.1	Tomato	golgi, nucleus, plasma membrane	60.24	53.55
CDY39771	Canola	endoplasmic reticulum, plasma membrane, vacuole	43.34	53.18
Zm00001d002503_P001	Maize	plasma membrane	59.79	50.97
TraesCS2B01G473000.1	Wheat	endoplasmic reticulum	57.58	50.43
HORVU2Hr1G105430.1	Barley	cytosol, peroxisome, plasma membrane	58.8	50.2
TraesCS2A01G451500.1	Wheat	plasma membrane	57.96	49.51
KXG26126	Sorghum	plasma membrane	55.98	49.4
CDX82552	Canola	plasma membrane	46.15	49.23
KXG27008	Sorghum	plasma membrane	59.71	49.15
TraesCS2A01G451300.1	Wheat	plastid	58.57	48.49
Os04t0588700-01	Rice	cytosol, plasma membrane	49.12	48.39
TraesCS2D01G451100.2	Wheat	cytosol	59.03	47.66
Zm00001d026041_P005	Maize	plasma membrane	48.06	47.23
CDY63884	Canola	plasma membrane	43.87	46.79
TraesCS2B01G472800.1	Wheat	cytosol, peroxisome, plasma membrane	59.03	46.66
CDY43395	Canola	plasma membrane	46.76	41.91
CDX89842	Canola	plasma membrane	48.13	41.91
CDY18207	Canola	plasma membrane	48.13	41.88
CDY03309	Canola	golgi	45.54	41.67
CDX71911	Canola	plasma membrane	36.02	40.78
CDY06021	Canola	plasma membrane	36.1	40.72
CDY23680	Canola	plasma membrane	36.94	36.17
CDY27531	Canola	plasma membrane	38.61	35.7
CDY37305	Canola	plasma membrane	38.46	35.56
CDY06441	Canola	plasma membrane	39.38	35.29
CDY44021	Canola	plastid	46.46	35.2
CDY23565	Canola	plastid	46.15	34.89
CDY43277	Canola	plastid	39.38	34.51
CDY72149	Canola	cytosol, peroxisome, plasma membrane	15.84	33.99
CDX93660	Canola	plastid	39.22	33.93
CDY11440	Canola	plastid	38.31	33.87
CDX76656	Canola	plasma membrane, plastid	38.08	33.81
CDY09589	Canola	plasma membrane	31.15	27.39
CDX98202	Canola	plasma membrane	30.31	27.28
CDY09591	Canola	plasma membrane	32.98	26.66
CDY02289	Canola	plasma membrane	32.9	26.62
CDY12054	Canola	plasma membrane	32.75	26.49
CDX90247	Canola	plasma membrane	32.6	26.35
CDY31633	Canola	plasma membrane	32.52	26.26
CDX84290	Canola	plasma membrane	32.52	26.21
CDY01519	Canola	plasma membrane	28.26	25.93
CDY02290	Canola	plasma membrane	31.23	25.39
CDX77595	Canola	extracellular	0.99	6.47

Protein Annotations

Gene3D:1.20.1560.10	MapMan:24.1.3.1.2	Gene3D:3.40.50.300	GO:A0A078EGC0	InterPro:AAA+_ATPase	InterPro:ABC1_TM_dom
InterPro:ABC1_TM_sf	InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	EnsemblPlants:CDX98408	ProteinID:CDX98408	ProteinID:CDX98408.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
GO:GO:0016887	GO:GO:0042626	GO:GO:0055085	EnsemblPlantsGene:GSBRNA2T00105993001	InterPro:IPR003439	InterPro:IPR011527
InterPro:IPR036640	InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF00664	ScanProsite:PS00211	PFscan:PS50893
PFscan:PS50929	PANTHER:PTHR24223	PANTHER:PTHR24223:SF165	SMART:SM00382	SUPFAM:SSF52540	SUPFAM:SSF90123
TMHMM:TMhelix	UniParc:UPI0004EEDD2D	SEG:seg	:	:	:

Description

BnaC06g17690D

Coordinates

chrLK031904:-:1132444..1138803

Molecular Weight (calculated)

146853.0 Da

IEP (calculated)

7.943

GRAVY (calculated)

0.107

Length

1313 amino acids

Sequence
(BLAST)

0001: MSMPFGSAAQ MGLTQWLQLN SPCMKEHISI TMQLAFLAFF VIHFAWKRLG AVRNRGGNDI EEDLKKQSFS YKLSLLCSVS IFGTHCFILL LLFQNSTVPQ
0101: CDSSVSVFSA EISQALSWLI VSVYVMKIKK WRLIEFPWML RTWWLCSFIL SLTFTAHFIT AKDEPLEFRD YADLTCLVAS LFLLTVSIRG KTGLQFLESS
0201: EVTEPLLLCS ETEQIKKKSS SFSPYGNATL FQRITFSWIN PLFSLGYKKP LEKDDVPNIY VKDSAQTCSQ AFDKNLKTTI EQEGPGRAFF YKSHLGLGAV
0301: AALVTTLMVM ACNYPLTRIQ RTYQSDIMNA KDERMKATSE ILKNMKILKL QAWDNQFLNK VKRLRKKEYD CLWKSLRLQA FTTFILWGAP SLISVVTFVT
0401: CMLIGVKLTS GAVLSALATF QMLQSPIFGL PDLLSALVQS KVSADRIASY LQQSETQKDA VEYLSKDDTE LSVEIENGAF SWEPEASRPT LDEIELRVKT
0501: GMKVAICGAV GSGKSSLLSS ILGEIQKLRG TVRVSGKQAY VPQSPWILTG TIRDNILFGS IYESEKYERT VKACALIKDF ELFSNGDMTE IGERGINMSG
0601: GQKQRIQIAR AVYQDADVYL LDDPFSAVDA HTGRQLFEEC LMGILKEKTV LYVTHQVEFL PAADLILVMQ NGRVMQAGKF QELLKQNIGF EVLTQRDSEH
0701: NISTENKKKE AKLVQDEETE KGVIGKEVYL AYLRTVKGGL LVPIIILAQS CFQMLQIASN YWMAWTAPPT AESKPKMSMD KILLVYALLA AGSSLCVLAR
0801: TILVAIGGLS TAEKFFSRML CSIFRAPMSF FDSTPTGRIL NRVSTDQSVL DLEMAIKLGW CAFSIIQIVG TIFVMSQVAW QVCVIFIPVA VACVFYQRYY
0901: TPTARELSRM SGVERAPILH HFAESLAGAT TIRAFDQRDR FISSNLTLID NHSRPWFHVA SAMEWLSFRL NLLSHFVFAF SLVLLVTLPE GVINPSIAGL
1001: GVTYGLSLNV LQATVIWNIC NAENKMISVE RILQYSKIPS EAPLVVDAHK PLDNWPNVGS IVFRDLQVRY AEHFPAVLKN ITCEFPGGKK IGVVGRTGSG
1101: KSTLIQALFR IVEPSHGTIV IDNVDITKIG LHDLRSRLGI IPQDPALFDG TVRVNLDPLA QYTDQELWEA LDKCQLGDVL RAKDEKLNAT VVENGDNWSV
1201: GQRQLVCLGR VLLKKSNILV LDEATASVDS ATDGVIQKII TQEFKDRTVV TIAHRIHTVI ESDLVLVLSD AGRIAEFDSP AKLLEREDSF FSKLIKEYSM
1301: RSKHFTGSNN LLS

Best Arabidopsis Sequence Match ( AT3G60970.1 )
(BLAST)

0001: MSVDVQRITD FIWYVNSIWM LPIQIFSAIY ILQKHLGLGA LAALVTTLMV MACNYPLTRL QRNYQSDIMN AKDDRMKATS EILKNMKILK LQAWDNQFLN
0101: KVKTLRKKEY DCLWKSLRLQ DFTTFILWGA PSLISVVTFV TCMLMGVKLT AGAVLSALAT FQMLQSPIFG LPDLLSALVQ SKVSADRIAS YLQQSETQKD
0201: AVEYCSNDHT EFSVEIENGA FSWEPESSRP TLDDIELKVK SGMKVAICGA VGSGKSSLPS SILGEIQKLK GTVRVSGKQA YVPQSPWILS GTIRDNILFG
0301: SIYESEKYER TVKACALIKD FELFSNGDLT EIGERGINMS GGQKQRIQIA RAVYQNADIY LLDDPFSAVD AHTGRELFED CLMGILKDKT VLYVTHQVEF
0401: LPAADLILVM QNGRVMQAGK FEELLKQNIG FEVLTQCDSE HNISTENKKK EAKLVQDEET EKGVIGKEVY LTYLTTVKGG LLVPFIILAQ SCFQMLQIAS
0501: NYWMAWTAPP TAESIPKLGM GRILLVYALL AAGSSLCVLA RTILVAIGGL STAETFFSRM LCSIFRAPMS YFDSTPTGRI LNRASTDQSV LDLEMAVKLG
0601: WCAFSIIQIV GTIFVMSQVA WQVCVIFIPV AVACVFYQRY YTPTERELSR MSGVERAPIL HHFAESLAGA TTIRAFDQRD RFISSNLVLI DSHSRPWFHV
0701: ASAMEWLSFR LNLLSHFVFA FSLVLLVTLP EGVINPSIAG LGVTYGLSLN VLQATVIWNI CNAENKMISV ERILQHSKIP SEAPLVIDDQ RPLDNWPNVG
0801: SIVFRDLQVR YAEHFPAVLK NITCAFPGGK KIGVVGRTGS GKSTLIQALF RIVEPSHGTI VIDNVDITKI GLHDLRSRLG IIPQDNALFD GTIRLNLDPL
0901: AQYTDREIWE ALDKCQLGDV IRAKDEKLDA TVVENGENWS VGQRQLVCLG RVLLKKSNIL VLDEATASVD SATDGVIQKI INQEFKDRTV VTIAHRIHTV
1001: IESDLVLVLS DGRIAEFDSP AKLLQREDSF FSKLIKEYSL RSNHFAGSND LLS

Arabidopsis Description

ABCC15Putative ABC transporter C family member 15 [Source:UniProtKB/Swiss-Prot;Acc:Q7FB56]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.