CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	golgi, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra032385.1-P	Field mustard	plasma membrane	99.45	99.45
CDY09591	Canola	plasma membrane	98.34	98.28
CDX90247	Canola	plasma membrane	94.39	94.33
CDY12054	Canola	plasma membrane	94.33	94.33
CDY31633	Canola	plasma membrane	85.95	85.79
CDX84290	Canola	plasma membrane	86.01	85.7
KRH11151	Soybean	plasma membrane	74.49	74.63
KRH21096	Soybean	endoplasmic reticulum	74.37	74.51
Solyc08g006880.2.1	Tomato	nucleus	74.31	74.17
EES12878	Sorghum	plasma membrane	72.58	72.4
Zm00001d002275_P029	Maize	plasma membrane	72.09	71.82
HORVU2Hr1G103620.1	Barley	plasma membrane	71.72	71.5
GSMUA_Achr8P33250_001	Banana	endoplasmic reticulum, golgi, plastid	56.19	71.47
Os04t0620000-01	Rice	plasma membrane	71.29	71.11
CDY72149	Canola	cytosol, peroxisome, plasma membrane	26.49	70.26
TraesCS1A01G404300.1	Wheat	plasma membrane	67.84	68.51
CDX98202	Canola	plasma membrane	60.69	67.51
CDY09589	Canola	plasma membrane	60.51	65.77
GSMUA_Achr7P03410_001	Banana	endoplasmic reticulum, plasma membrane, plastid	57.12	63.71
CDY02290	Canola	plasma membrane	61.92	62.23
CDX77595	Canola	extracellular	6.04	48.76
CDY71198	Canola	endoplasmic reticulum, mitochondrion, plasma membrane	12.88	41.3
CDX82557	Canola	plasma membrane	12.63	40.84
CDY51899	Canola	endoplasmic reticulum, plasma membrane, vacuole	13.19	39.34
CDY39771	Canola	endoplasmic reticulum, plasma membrane, vacuole	24.77	37.57
CDX82552	Canola	plasma membrane	26.56	35.01
CDY23680	Canola	plasma membrane	28.28	34.23
CDX71911	Canola	plasma membrane	24.4	34.14
CDY06021	Canola	plasma membrane	24.34	33.93
CDY63884	Canola	plasma membrane	25.69	33.87
CDY64080	Canola	plasma membrane	26.8	33.18
CDX98408	Canola	plasma membrane	26.62	32.9
CDX76656	Canola	plasma membrane, plastid	29.57	32.45
CDY03309	Canola	golgi	28.53	32.26
CDY43395	Canola	plasma membrane	28.9	32.01
CDY11440	Canola	plastid	29.27	31.99
CDX89842	Canola	plasma membrane	29.7	31.96
CDY18207	Canola	plasma membrane	29.7	31.94
CDY43277	Canola	plastid	29.45	31.91
CDY37305	Canola	plasma membrane	27.48	31.41
CDY27531	Canola	plasma membrane	27.36	31.27
CDX93660	Canola	plastid	29.21	31.23
CDY01519	Canola	plasma membrane	27.17	30.82
CDY06441	Canola	plasma membrane	27.3	30.24
CDY44021	Canola	plastid	27.54	25.79
CDY23565	Canola	plastid	27.42	25.62

Protein Annotations

Gene3D:1.20.1560.10	MapMan:24.1.3.1.2	Gene3D:3.40.50.300	GO:A0A078ENM2	InterPro:AAA+_ATPase	InterPro:ABC1_TM_dom
InterPro:ABC1_TM_sf	InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	EnsemblPlants:CDY02289	ProteinID:CDY02289	ProteinID:CDY02289.1
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021
GO:GO:0016787	GO:GO:0016887	GO:GO:0042626	GO:GO:0055085	EnsemblPlantsGene:GSBRNA2T00113731001	InterPro:IPR003439
InterPro:IPR011527	InterPro:IPR036640	InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF00664	ScanProsite:PS00211
PFscan:PS50893	PFscan:PS50929	PANTHER:PTHR24223	PANTHER:PTHR24223:SF251	SMART:SM00382	SUPFAM:SSF52540
SUPFAM:SSF90123	TMHMM:TMhelix	UniParc:UPI0004EDFEC4	SEG:seg	:	:

Description

BnaA09g26130D

Coordinates

chrLK031933:+:103608..112692

Molecular Weight (calculated)

182100.0 Da

IEP (calculated)

6.573

GRAVY (calculated)

0.032

Length

1623 amino acids

Sequence
(BLAST)

0001: MGFKPLDWYC KPVPNGVWSK MVDYAFGAYT PCAIDSFVLG ISHLALLILC LYRIWLTVKD HKVEKFCLRS KLYNYFLALL AAYSTAEPLF RLVMRISLLD
0101: LDAAGFPPYE GFMLGLEAFA WGSALVMTVV ETKTYIRELR WYVRFAVVYA LVGDMVLLNL VLSVKEYSGS FKLYLYISEV AVQVAFGTLL FVYFPNLDPY
0201: AGYTPVPAET SEDYEYEELP GGEQICPERH ANLFDRIFFS WLNPLMTLGS KRPLTEKDVW HLDTWDRTET LMKSFQMSWE KELEKPKPWL LRALNNSLGG
0301: RFWWGGFWKI GNDCSQFVGP LLLNELLKSM QLNEPAWIGY IYAISIFVGV VLGVLCEAQY FQNVMRVGYR LRSALIAAVF RKSLRLTNEG RKKFQTGKIT
0401: NLMTTDAESL QQICQSLHTM WSAPFRIIVS LVLLYQQLGV ASLIGALFLV LMFPIQTVII SKTQKLTKEG LQRTDKRIGL MNEVLAAMDT VKCYAWENSF
0501: QSKVQTVRDD ELSWFRKAQL LSAFNMFILN SIPVFVTVVS FGVFSLLGGD LTPARAFTAL SLFSVLRFPL FMLPNIITQA VNAKVSLTRL EEVLSTEERV
0601: LLPNPPIEPG QPAISIRNGY FSWDSKAERP TLLNINLDVP VGSLVAVVGS TGEGKTSLIS AMLGELPAIS DAIVTLRGSV AYVPQVSWIF NATVRDNILF
0701: GAPFDKEKYE RVIDVTALRH DLELLPGGDL TEIGERGVNI SGGQKQRVSM ARAVYSNSDV CILDDPLSAL DAHVGQQVFE KCIKRELADK TRVLVTNQLH
0801: FLSQVDKILL VHEGTVKEEG TYEELSHSGP LFQRLMENAG KVEEYSEENE EAGADQKSVK QVENGNSNNP QMEGTESKKS KEGNSVLVKR EERETGVVSW
0901: KVLKRYQDAL GGGWVVMMLL ICYVLTQVFR VASSTWLSEW TDAGTPKSHG PLFYNLIYAI LSFGQVFVTL VNSYWLIMAS LYAAKKMHDA MLGSILRAPM
1001: VFFQTNPLGR IINRFAKDMG DIDRTVAVFV NMFMGSIAQL LSTIILIGIV STLSLWAIMP LLVVFYGAYL YYQNTSREVK RMDSVSRSPV YAQFGEALNG
1101: LSSIRAYKAY DRMAEINGRS MDNNIRFTLV NMGANRWLGI RLEVLGGLMV WLTASLAVMQ NGKAENQQAF ASTMGLLLSY ALSITSSLTA VLRLASLAEN
1201: SLNSVERVGN YIETPSEAPL VIENNRPPPG WPSSGSIKFQ DVVLRYRPEL PPVLHEVSFF ITPMDKVGIV GRTGAGKSSL LNALFRIVEL EKGRILIDEC
1301: DIGKFGLMDL RKVLGIIPQA PVLFSGTVRF NLDPFSEHND ADLWESLERA HLKDTIRRNP LGLDAEVTEA GENFSVGQRQ LLSLARALLR RSKILVLDEA
1401: TAAVDVRTDV LIQKTIREEF KSCTMLIIAH RLNTIIDCDK VLVLDSGKVQ EFSTPENLLS NGESSFSKMV QSTGPANAEY LRGIVLENKR IREANGDDSS
1501: QPLEGQRKWQ ASSRWAAAAQ FALAVSLTSS HNDLQSLETQ DDNSILKRTK DAVVTLRSVL EGKHDKEIDE SLTQNDISRE RWWPSLYKMV EGLAVMSRLA
1601: KNRMQHSEYS LEGRSFDWDN VEM

Best Arabidopsis Sequence Match ( AT1G30400.2 )
(BLAST)

0001: MGFEPLDWYC KPVPNGVWTK TVDYAFGAYT PCAIDSFVLG ISHLVLLILC LYRLWLITKD HKVDKFCLRS KWFSYFLALL AAYATAEPLF RLVMRISVLD
0101: LDGAGFPPYE AFMLVLEAFA WGSALVMTVV ETKTYIHELR WYVRFAVIYA LVGDMVLLNL VLSVKEYYGS FKLYLYISEV AVQVAFGTLL FVYFPNLDPY
0201: PGYTPVGTEN SEDYEYEELP GGENICPERH ANLFDSIFFS WLNPLMTLGS KRPLTEKDVW HLDTWDKTET LMRSFQKSWD KELEKPKPWL LRALNNSLGG
0301: RFWWGGFWKI GNDCSQFVGP LLLNELLKSM QLNEPAWIGY IYAISIFVGV VLGVLCEAQY FQNVMRVGYR LRSALIAAVF RKSLRLTNEG RKKFQTGKIT
0401: NLMTTDAESL QQICQSLHTM WSAPFRIIVA LVLLYQQLGV ASIIGALFLV LMFPIQTVII SKTQKLTKEG LQRTDKRIGL MNEVLAAMDT VKCYAWENSF
0501: QSKVQTVRDD ELSWFRKAQL LSAFNMFILN SIPVLVTVVS FGVFSLLGGD LTPARAFTSL SLFSVLRFPL FMLPNIITQM VNANVSLNRL EEVLSTEERV
0601: LLPNPPIEPG QPAISIRNGY FSWDSKADRP TLSNINLDIP LGSLVAVVGS TGEGKTSLIS AMLGELPARS DATVTLRGSV AYVPQVSWIF NATVRDNILF
0701: GAPFDQEKYE RVIDVTALQH DLELLPGGDL TEIGERGVNI SGGQKQRVSM ARAVYSNSDV CILDDPLSAL DAHVGQQVFE KCIKRELGQT TRVLVTNQLH
0801: FLSQVDKILL VHEGTVKEEG TYEELCHSGP LFQRLMENAG KVEDYSEENG EAEVDQTSVK PVENGNANNL QKDGIETKNS KEGNSVLVKR EERETGVVSW
0901: KVLERYQNAL GGAWVVMMLV ICYVLTQVFR VSSSTWLSEW TDSGTPKTHG PLFYNIVYAL LSFGQVSVTL INSYWLIMSS LYAAKKMHDA MLGSILRAPM
1001: VFFQTNPLGR IINRFAKDMG DIDRTVAVFV NMFMGSIAQL LSTVILIGIV STLSLWAIMP LLVVFYGAYL YYQNTSREIK RMDSTTRSPV YAQFGEALNG
1101: LSSIRAYKAY DRMAEINGRS MDNNIRFTLV NMAANRWLGI RLEVLGGLMV WLTASLAVMQ NGKAANQQAY ASTMGLLLSY ALSITSSLTA VLRLASLAEN
1201: SLNSVERVGN YIEIPSEAPL VIENNRPPPG WPSSGSIKFE DVVLRYRPEL PPVLHGVSFL ISPMDKVGIV GRTGAGKSSL LNALFRIVEL EKGRILIDEC
1301: DIGRFGLMDL RKVLGIIPQA PVLFSGTVRF NLDPFSEHND ADLWESLERA HLKDTIRRNP LGLDAEVTEA GENFSVGQRQ LLSLARALLR RSKILVLDEA
1401: TAAVDVRTDV LIQKTIREEF KSCTMLIIAH RLNTIIDCDK VLVLDSGKVQ EFSSPENLLS NGESSFSKMV QSTGTANAEY LRSITLENKR TREANGDDSQ
1501: PLEGQRKWQA SSRWAAAAQF ALAVSLTSSH NDLQSLEIED DNSILKKTKD AVVTLRSVLE GKHDKEIEDS LNQSDISRER WWPSLYKMVE GLAVMSRLAR
1601: NRMQHPDYNL EGKSFDWDNV EM

Arabidopsis Description

ABCC1ABC transporter C family member 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8G9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.