Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- peroxisome 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 3
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d004930_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G34660.1 | Zm00001d004930_P001 | AT3G21640.1 | 15133126 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES12878 | Sorghum | plasma membrane | 97.18 | 97.3 |
| Os04t0620000-01 | Rice | plasma membrane | 91.59 | 91.7 |
| HORVU2Hr1G103620.1 | Barley | plasma membrane | 89.87 | 89.93 |
| TraesCS1A01G404300.1 | Wheat | plasma membrane | 85.82 | 86.99 |
| GSMUA_Achr8P33250_001 | Banana | endoplasmic reticulum, golgi, plastid | 61.08 | 77.98 |
| KRH21096 | Soybean | endoplasmic reticulum | 73.73 | 74.14 |
| KRH11151 | Soybean | plasma membrane | 73.66 | 74.07 |
| AT2G34660.1 | Thale cress | plasma membrane | 73.24 | 73.51 |
| Solyc08g006880.2.1 | Tomato | nucleus | 73.36 | 73.49 |
| VIT_10s0003g04470.t01 | Wine grape | endoplasmic reticulum, plasma membrane, vacuole | 72.38 | 72.6 |
| CDY31633 | Canola | plasma membrane | 72.25 | 72.39 |
| CDX84290 | Canola | plasma membrane | 72.38 | 72.38 |
| Bra005402.1-P | Field mustard | plasma membrane | 72.19 | 72.32 |
| CDY09591 | Canola | plasma membrane | 71.88 | 72.11 |
| CDY02289 | Canola | plasma membrane | 71.82 | 72.09 |
| Bra032385.1-P | Field mustard | plasma membrane | 71.82 | 72.09 |
| CDY72149 | Canola | cytosol, peroxisome, plasma membrane | 27.07 | 72.06 |
| CDY12054 | Canola | plasma membrane | 71.64 | 71.9 |
| Bra010773.1-P | Field mustard | plasma membrane | 69.98 | 71.7 |
| CDX90247 | Canola | plasma membrane | 71.33 | 71.55 |
| GSMUA_Achr7P03410_001 | Banana | endoplasmic reticulum, plasma membrane, plastid | 62.06 | 69.48 |
| AT1G30410.1 | Thale cress | plasma membrane | 63.54 | 69.09 |
| Bra014879.1-P | Field mustard | plasma membrane | 63.9 | 68.85 |
| CDX98202 | Canola | plasma membrane | 61.14 | 68.27 |
| AT1G30420.1 | Thale cress | plasma membrane | 61.33 | 66.82 |
| CDY09589 | Canola | plasma membrane | 59.85 | 65.3 |
| CDY02290 | Canola | plasma membrane | 61.14 | 61.67 |
| Bra032386.1-P | Field mustard | plasma membrane | 53.22 | 60.04 |
| Zm00001d048327_P001 | Maize | cytosol | 1.17 | 46.34 |
| Zm00001d020666_P004 | Maize | plasma membrane | 26.09 | 32.27 |
| Zm00001d027625_P001 | Maize | plasma membrane | 29.22 | 31.88 |
| Zm00001d025043_P004 | Maize | plasma membrane, plastid | 29.4 | 31.43 |
| Zm00001d004361_P001 | Maize | plasma membrane | 29.16 | 30.92 |
| Zm00001d002503_P001 | Maize | plasma membrane | 29.16 | 30.84 |
| Zm00001d009243_P001 | Maize | mitochondrion | 28.36 | 30.62 |
| Zm00001d008733_P001 | Maize | plasma membrane | 27.81 | 30.24 |
| Zm00001d045097_P001 | Maize | plasma membrane | 27.01 | 30.05 |
| Zm00001d048329_P003 | Maize | plasma membrane | 27.93 | 29.95 |
| Zm00001d045279_P001 | Maize | plasma membrane | 8.41 | 29.91 |
| Zm00001d031447_P003 | Maize | plastid | 26.83 | 29.21 |
| Zm00001d045269_P004 | Maize | plasma membrane | 26.52 | 29.19 |
| Zm00001d026041_P005 | Maize | plasma membrane | 23.76 | 28.97 |
Protein Annotations
| Gene3D:1.20.1560.10 | EntrezGene:103645927 | MapMan:24.1.3.1.2 | Gene3D:3.40.50.300 | UniProt:A0A1D6DZ56 | InterPro:AAA+_ATPase |
| InterPro:ABC1_TM_dom | InterPro:ABC1_TM_sf | InterPro:ABC_transporter-like | InterPro:ABC_transporter_CS | ncoils:Coil | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005215 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 |
| GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016787 | GO:GO:0016887 |
| GO:GO:0042626 | GO:GO:0055085 | InterPro:IPR003439 | InterPro:IPR011527 | InterPro:IPR036640 | ProteinID:ONM13797.1 |
| ProteinID:ONM13804.1 | ProteinID:ONM13811.1 | ProteinID:ONM13815.1 | InterPro:P-loop_NTPase | PFAM:PF00005 | PFAM:PF00664 |
| ScanProsite:PS00211 | PFscan:PS50893 | PFscan:PS50929 | PANTHER:PTHR24223 | PANTHER:PTHR24223:SF251 | SMART:SM00382 |
| SUPFAM:SSF52540 | SUPFAM:SSF90123 | TMHMM:TMhelix | UniParc:UPI000843E8F4 | EnsemblPlantsGene:Zm00001d002275 | EnsemblPlants:Zm00001d002275_P029 |
| EnsemblPlants:Zm00001d002275_T029 | SEG:seg | : | : | : | : |
Description
ABC transporter C family member 2
Coordinates
chr2:+:9303355..9316367
Molecular Weight (calculated)
183293.0 Da
IEP (calculated)
7.127
GRAVY (calculated)
0.046
Length
1629 amino acids
Sequence
(BLAST)
(BLAST)
0001: MGFDPLEWYC QPVKDGVWSH VVENAFGAYT PCGTDTLVVC ISYLALFGVC FYRIWRTTRD YTVQRYKLRS PYYNYLLGLL VVYCIAEPLY RIITGTSIMN
0101: LDGQPGLAPF EIVSLIIESV AWCCMLVMIL LETRIYINEF RWYIRFVVIY MMVGEAAMFN LVLSVRQYYS SRYTTSVAST FLMGPFLFLF GILMVVYLPS
0201: LDPYPGYTPI RNEVLVDNTD YEPLPGGEQI CPERHANIFA RIFFSWMTPL MQQGFRRPIT DKDIWKLDSW DETETLYSQF QKRWNDELQK PNPWLLRALH
0301: SSLWGRFWLG GFFKIGNDAS QFVGPLVLNL LLESMQKGDP SWSGYIYAFS IFAGVSLGVL AEAQYFQNVM RVGFRLRSTL IAAVFRKSLR LTNDSRRKFA
0401: SGRITNLIST DAESLQQVCQ QLHSLWSAPF RIVISMVLLY AQLGPAALVG ALMLVLLFPI QTVIISKMQK LTKEGLQRTD KRISLMNEVL AAMDTVKCYA
0501: WEQSFQSKVQ DIRDDELSWF RRAQLLAALN SFILNSIPVV VTVVSFGVYS LLGGDLTPAK AFTSLSLFAV LRFPLFMLPN LITQVVNCKV SLKRLEDLLL
0601: AEERLLLPNP PIDPDLPAIS IKNGYFSWES EAQRPTLSNV NLDVPVGSLV AIVGSTGEGK TSLISAMLGE IPPVSGSGTS VVIRGSVAYV PQVSWIFNAT
0701: VRDNILFGSP FQPPRYEKAI DATSLRHDLD LLPGGDLTEI GERGVNISGG QKQRVSMARA VYSDSDVYIF DDPLSALDAH VGRQVFDKCI KGELQHKTRV
0801: LVTNQLHFLP YVDKILLIHD GVIKEEGTFD ELSNSGELFK KLMENAGKME EQVEEDESKP KDVAKQTVNG DVTIADEGSQ KSQDSSSKTK PGKSVLIKQE
0901: ERETGVVSAR VLSRYKNALG GIWVVSILFF CYALTEVLRI SSSTWLSIWT DEGSLKIHGS GYYNLIYGIL SFGQVLVTLS NSYWLIISSL RAAKRLHDAM
1001: LRSILRAPMV FFHTNPLGRI INRFSKDMGD IDRNVAVFVN MFMAQISQLL STFVLIGFVS TMSLWAIMPL LILFYAAYLY YQATSREVKR LDSITRSPVY
1101: AQFSEALNGL STIRAYKAYD RMANINGRSM DNNIRFTLVN MGANRWLAIR LETLGGIMIW FTATFAVMQN QRAENQKAFA STMGLLLTYT LNITNLLTAV
1201: LRLASLAENS LNAVERVGTY IELPSEAPPV IEDHRPPPGW PSSGVIKFED VVLRYRPELP PVLHGISFVI NGSEKVGIVG RTGAGKSSML NALFRIVELE
1301: RGRILIDDCD TSKFGIWDLR KVLGIIPQAP VLFSGSVRFN LDPFNEHNDA DLWEALERAH LKDVIRRNSL GLDAEVSEAG ENFSVGQRQL LSLARALLRR
1401: AKILVLDEAT AAVDVRTDAL IQKTIREEFK SCTMLIIAHR LNTVIDCDRL LILSSGQVLE FDSPENLLSN EGSAFSKMVQ STGPSNAEYL KSLVFASGEE
1501: RSRREEIKLQ DIQRRWVASN RWAEAAQFAL ARSLTSSHSD LLALEAAEGN NILRRTKDAV ITLQSVLEGK HNTEIDESLT QYQVPADRWW SSLYKVIEGL
1601: ATMSRLGRNR LQQPSYNFEN NNSIDWDQM
0101: LDGQPGLAPF EIVSLIIESV AWCCMLVMIL LETRIYINEF RWYIRFVVIY MMVGEAAMFN LVLSVRQYYS SRYTTSVAST FLMGPFLFLF GILMVVYLPS
0201: LDPYPGYTPI RNEVLVDNTD YEPLPGGEQI CPERHANIFA RIFFSWMTPL MQQGFRRPIT DKDIWKLDSW DETETLYSQF QKRWNDELQK PNPWLLRALH
0301: SSLWGRFWLG GFFKIGNDAS QFVGPLVLNL LLESMQKGDP SWSGYIYAFS IFAGVSLGVL AEAQYFQNVM RVGFRLRSTL IAAVFRKSLR LTNDSRRKFA
0401: SGRITNLIST DAESLQQVCQ QLHSLWSAPF RIVISMVLLY AQLGPAALVG ALMLVLLFPI QTVIISKMQK LTKEGLQRTD KRISLMNEVL AAMDTVKCYA
0501: WEQSFQSKVQ DIRDDELSWF RRAQLLAALN SFILNSIPVV VTVVSFGVYS LLGGDLTPAK AFTSLSLFAV LRFPLFMLPN LITQVVNCKV SLKRLEDLLL
0601: AEERLLLPNP PIDPDLPAIS IKNGYFSWES EAQRPTLSNV NLDVPVGSLV AIVGSTGEGK TSLISAMLGE IPPVSGSGTS VVIRGSVAYV PQVSWIFNAT
0701: VRDNILFGSP FQPPRYEKAI DATSLRHDLD LLPGGDLTEI GERGVNISGG QKQRVSMARA VYSDSDVYIF DDPLSALDAH VGRQVFDKCI KGELQHKTRV
0801: LVTNQLHFLP YVDKILLIHD GVIKEEGTFD ELSNSGELFK KLMENAGKME EQVEEDESKP KDVAKQTVNG DVTIADEGSQ KSQDSSSKTK PGKSVLIKQE
0901: ERETGVVSAR VLSRYKNALG GIWVVSILFF CYALTEVLRI SSSTWLSIWT DEGSLKIHGS GYYNLIYGIL SFGQVLVTLS NSYWLIISSL RAAKRLHDAM
1001: LRSILRAPMV FFHTNPLGRI INRFSKDMGD IDRNVAVFVN MFMAQISQLL STFVLIGFVS TMSLWAIMPL LILFYAAYLY YQATSREVKR LDSITRSPVY
1101: AQFSEALNGL STIRAYKAYD RMANINGRSM DNNIRFTLVN MGANRWLAIR LETLGGIMIW FTATFAVMQN QRAENQKAFA STMGLLLTYT LNITNLLTAV
1201: LRLASLAENS LNAVERVGTY IELPSEAPPV IEDHRPPPGW PSSGVIKFED VVLRYRPELP PVLHGISFVI NGSEKVGIVG RTGAGKSSML NALFRIVELE
1301: RGRILIDDCD TSKFGIWDLR KVLGIIPQAP VLFSGSVRFN LDPFNEHNDA DLWEALERAH LKDVIRRNSL GLDAEVSEAG ENFSVGQRQL LSLARALLRR
1401: AKILVLDEAT AAVDVRTDAL IQKTIREEFK SCTMLIIAHR LNTVIDCDRL LILSSGQVLE FDSPENLLSN EGSAFSKMVQ STGPSNAEYL KSLVFASGEE
1501: RSRREEIKLQ DIQRRWVASN RWAEAAQFAL ARSLTSSHSD LLALEAAEGN NILRRTKDAV ITLQSVLEGK HNTEIDESLT QYQVPADRWW SSLYKVIEGL
1601: ATMSRLGRNR LQQPSYNFEN NNSIDWDQM
0001: MGFEPLDWYC KPVPNGVWTK TVDYAFGAYT PCAIDSFVLG ISHLVLLILC LYRLWLITKD HKVDKFCLRS KWFSYFLALL AAYATAEPLF RLVMRISVLD
0101: LDGAGFPPYE AFMLVLEAFA WGSALVMTVV ETKTYIHELR WYVRFAVIYA LVGDMVLLNL VLSVKEYYGS FKLYLYISEV AVQVAFGTLL FVYFPNLDPY
0201: PGYTPVGTEN SEDYEYEELP GGENICPERH ANLFDSIFFS WLNPLMTLGS KRPLTEKDVW HLDTWDKTET LMRSFQKSWD KELEKPKPWL LRALNNSLGG
0301: RFWWGGFWKI GNDCSQFVGP LLLNELLKSM QLNEPAWIGY IYAISIFVGV VLGVLCEAQY FQNVMRVGYR LRSALIAAVF RKSLRLTNEG RKKFQTGKIT
0401: NLMTTDAESL QQICQSLHTM WSAPFRIIVA LVLLYQQLGV ASIIGALFLV LMFPIQTVII SKTQKLTKEG LQRTDKRIGL MNEVLAAMDT VKCYAWENSF
0501: QSKVQTVRDD ELSWFRKAQL LSAFNMFILN SIPVLVTVVS FGVFSLLGGD LTPARAFTSL SLFSVLRFPL FMLPNIITQM VNANVSLNRL EEVLSTEERV
0601: LLPNPPIEPG QPAISIRNGY FSWDSKADRP TLSNINLDIP LGSLVAVVGS TGEGKTSLIS AMLGELPARS DATVTLRGSV AYVPQVSWIF NATVRDNILF
0701: GAPFDQEKYE RVIDVTALQH DLELLPGGDL TEIGERGVNI SGGQKQRVSM ARAVYSNSDV CILDDPLSAL DAHVGQQVFE KCIKRELGQT TRVLVTNQLH
0801: FLSQVDKILL VHEGTVKEEG TYEELCHSGP LFQRLMENAG KVEDYSEENG EAEVDQTSVK PVENGNANNL QKDGIETKNS KEGNSVLVKR EERETGVVSW
0901: KVLERYQNAL GGAWVVMMLV ICYVLTQVFR VSSSTWLSEW TDSGTPKTHG PLFYNIVYAL LSFGQVSVTL INSYWLIMSS LYAAKKMHDA MLGSILRAPM
1001: VFFQTNPLGR IINRFAKDMG DIDRTVAVFV NMFMGSIAQL LSTVILIGIV STLSLWAIMP LLVVFYGAYL YYQNTSREIK RMDSTTRSPV YAQFGEALNG
1101: LSSIRAYKAY DRMAEINGRS MDNNIRFTLV NMAANRWLGI RLEVLGGLMV WLTASLAVMQ NGKAANQQAY ASTMGLLLSY ALSITSSLTA VLRLASLAEN
1201: SLNSVERVGN YIEIPSEAPL VIENNRPPPG WPSSGSIKFE DVVLRYRPEL PPVLHGVSFL ISPMDKVGIV GRTGAGKSSL LNALFRIVEL EKGRILIDEC
1301: DIGRFGLMDL RKVLGIIPQA PVLFSGTVRF NLDPFSEHND ADLWESLERA HLKDTIRRNP LGLDAEVTEA GENFSVGQRQ LLSLARALLR RSKILVLDEA
1401: TAAVDVRTDV LIQKTIREEF KSCTMLIIAH RLNTIIDCDK VLVLDSGKVQ EFSSPENLLS NGESSFSKMV QSTGTANAEY LRSITLENKR TREANGDDSQ
1501: PLEGQRKWQA SSRWAAAAQF ALAVSLTSSH NDLQSLEIED DNSILKKTKD AVVTLRSVLE GKHDKEIEDS LNQSDISRER WWPSLYKMVE GLAVMSRLAR
1601: NRMQHPDYNL EGKSFDWDNV EM
0101: LDGAGFPPYE AFMLVLEAFA WGSALVMTVV ETKTYIHELR WYVRFAVIYA LVGDMVLLNL VLSVKEYYGS FKLYLYISEV AVQVAFGTLL FVYFPNLDPY
0201: PGYTPVGTEN SEDYEYEELP GGENICPERH ANLFDSIFFS WLNPLMTLGS KRPLTEKDVW HLDTWDKTET LMRSFQKSWD KELEKPKPWL LRALNNSLGG
0301: RFWWGGFWKI GNDCSQFVGP LLLNELLKSM QLNEPAWIGY IYAISIFVGV VLGVLCEAQY FQNVMRVGYR LRSALIAAVF RKSLRLTNEG RKKFQTGKIT
0401: NLMTTDAESL QQICQSLHTM WSAPFRIIVA LVLLYQQLGV ASIIGALFLV LMFPIQTVII SKTQKLTKEG LQRTDKRIGL MNEVLAAMDT VKCYAWENSF
0501: QSKVQTVRDD ELSWFRKAQL LSAFNMFILN SIPVLVTVVS FGVFSLLGGD LTPARAFTSL SLFSVLRFPL FMLPNIITQM VNANVSLNRL EEVLSTEERV
0601: LLPNPPIEPG QPAISIRNGY FSWDSKADRP TLSNINLDIP LGSLVAVVGS TGEGKTSLIS AMLGELPARS DATVTLRGSV AYVPQVSWIF NATVRDNILF
0701: GAPFDQEKYE RVIDVTALQH DLELLPGGDL TEIGERGVNI SGGQKQRVSM ARAVYSNSDV CILDDPLSAL DAHVGQQVFE KCIKRELGQT TRVLVTNQLH
0801: FLSQVDKILL VHEGTVKEEG TYEELCHSGP LFQRLMENAG KVEDYSEENG EAEVDQTSVK PVENGNANNL QKDGIETKNS KEGNSVLVKR EERETGVVSW
0901: KVLERYQNAL GGAWVVMMLV ICYVLTQVFR VSSSTWLSEW TDSGTPKTHG PLFYNIVYAL LSFGQVSVTL INSYWLIMSS LYAAKKMHDA MLGSILRAPM
1001: VFFQTNPLGR IINRFAKDMG DIDRTVAVFV NMFMGSIAQL LSTVILIGIV STLSLWAIMP LLVVFYGAYL YYQNTSREIK RMDSTTRSPV YAQFGEALNG
1101: LSSIRAYKAY DRMAEINGRS MDNNIRFTLV NMAANRWLGI RLEVLGGLMV WLTASLAVMQ NGKAANQQAY ASTMGLLLSY ALSITSSLTA VLRLASLAEN
1201: SLNSVERVGN YIEIPSEAPL VIENNRPPPG WPSSGSIKFE DVVLRYRPEL PPVLHGVSFL ISPMDKVGIV GRTGAGKSSL LNALFRIVEL EKGRILIDEC
1301: DIGRFGLMDL RKVLGIIPQA PVLFSGTVRF NLDPFSEHND ADLWESLERA HLKDTIRRNP LGLDAEVTEA GENFSVGQRQ LLSLARALLR RSKILVLDEA
1401: TAAVDVRTDV LIQKTIREEF KSCTMLIIAH RLNTIIDCDK VLVLDSGKVQ EFSSPENLLS NGESSFSKMV QSTGTANAEY LRSITLENKR TREANGDDSQ
1501: PLEGQRKWQA SSRWAAAAQF ALAVSLTSSH NDLQSLEIED DNSILKKTKD AVVTLRSVLE GKHDKEIEDS LNQSDISRER WWPSLYKMVE GLAVMSRLAR
1601: NRMQHPDYNL EGKSFDWDNV EM
Arabidopsis Description
ABCC1ABC transporter C family member 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8G9]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.