Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi, plastid
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 1
- endoplasmic reticulum 2
- extracellular 1
- vacuole 1
- plasma membrane 1
- golgi 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr6P12690_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G34660.1 | GSMUA_Achr6P12690_001 | AT3G21640.1 | 15133126 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY72149 | Canola | cytosol, peroxisome, plasma membrane | 34.72 | 72.39 |
| GSMUA_Achr7P03410_001 | Banana | endoplasmic reticulum, plasma membrane, plastid | 81.43 | 71.41 |
| EES12878 | Sorghum | plasma membrane | 78.61 | 61.65 |
| Zm00001d002275_P029 | Maize | plasma membrane | 77.98 | 61.08 |
| Os04t0620000-01 | Rice | plasma membrane | 77.74 | 60.97 |
| HORVU2Hr1G103620.1 | Barley | plasma membrane | 76.8 | 60.2 |
| KRH11151 | Soybean | plasma membrane | 74.76 | 58.89 |
| KRH21096 | Soybean | endoplasmic reticulum | 74.76 | 58.89 |
| Solyc08g006880.2.1 | Tomato | nucleus | 74.06 | 58.12 |
| VIT_10s0003g04470.t01 | Wine grape | endoplasmic reticulum, plasma membrane, vacuole | 73.59 | 57.82 |
| CDX84290 | Canola | plasma membrane | 73.67 | 57.7 |
| CDY31633 | Canola | plasma membrane | 73.51 | 57.69 |
| AT2G34660.1 | Thale cress | plasma membrane | 73.35 | 57.67 |
| Bra005402.1-P | Field mustard | plasma membrane | 73.43 | 57.63 |
| TraesCS1A01G404300.1 | Wheat | plasma membrane | 72.02 | 57.19 |
| CDY12054 | Canola | plasma membrane | 71.71 | 56.38 |
| CDY09591 | Canola | plasma membrane | 71.71 | 56.34 |
| CDY02289 | Canola | plasma membrane | 71.47 | 56.19 |
| Bra032385.1-P | Field mustard | plasma membrane | 71.47 | 56.19 |
| Bra010773.1-P | Field mustard | plasma membrane | 69.98 | 56.16 |
| CDX90247 | Canola | plasma membrane | 71.47 | 56.16 |
| AT1G30410.1 | Thale cress | plasma membrane | 62.54 | 53.27 |
| Bra014879.1-P | Field mustard | plasma membrane | 62.85 | 53.04 |
| CDX98202 | Canola | plasma membrane | 60.42 | 52.84 |
| AT1G30420.1 | Thale cress | plasma membrane | 60.97 | 52.04 |
| CDY09589 | Canola | plasma membrane | 60.42 | 51.64 |
| CDY02290 | Canola | plasma membrane | 61.83 | 48.85 |
| Bra032386.1-P | Field mustard | plasma membrane | 54.7 | 48.34 |
| GSMUA_Achr2P02280_001 | Banana | cytosol, golgi, plasma membrane | 27.27 | 30.16 |
| GSMUA_Achr10P... | Banana | plasma membrane | 27.66 | 28.93 |
| GSMUA_Achr6P31980_001 | Banana | plasma membrane | 27.43 | 27.34 |
| GSMUA_Achr10P... | Banana | plasma membrane | 25.63 | 26.8 |
| GSMUA_Achr8P12730_001 | Banana | plasma membrane | 28.53 | 26.69 |
| GSMUA_Achr10P... | Banana | plasma membrane | 26.65 | 26.52 |
| GSMUA_Achr11P... | Banana | plasma membrane | 29.23 | 25.57 |
| GSMUA_Achr11P... | Banana | golgi | 25.78 | 24.39 |
| GSMUA_Achr5P25430_001 | Banana | plasma membrane | 25.0 | 23.93 |
Protein Annotations
| Gene3D:1.20.1560.10 | MapMan:24.1.3.1.2 | Gene3D:3.40.50.300 | InterPro:AAA+_ATPase | InterPro:ABC1_TM_dom | InterPro:ABC1_TM_sf |
| InterPro:ABC_transporter-like | InterPro:ABC_transporter_CS | ncoils:Coil | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005215 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016787 | GO:GO:0016887 | GO:GO:0042626 | GO:GO:0055085 |
| EnsemblPlantsGene:GSMUA_Achr8G33250_001 | EnsemblPlants:GSMUA_Achr8P33250_001 | EnsemblPlants:GSMUA_Achr8T33250_001 | InterPro:IPR003439 | InterPro:IPR011527 | InterPro:IPR036640 |
| UniProt:M0TVS7 | InterPro:P-loop_NTPase | PFAM:PF00005 | PFAM:PF00664 | ScanProsite:PS00211 | PFscan:PS50893 |
| PFscan:PS50929 | PANTHER:PTHR24223 | PANTHER:PTHR24223:SF251 | SMART:SM00382 | SUPFAM:SSF52540 | SUPFAM:SSF90123 |
| TMHMM:TMhelix | UniParc:UPI000294DA39 | SEG:seg | : | : | : |
Description
ABC transporter C family member 2 [Source:GMGC_GENE;Acc:GSMUA_Achr8G33250_001]
Coordinates
chr8:+:34353045..34373741
Molecular Weight (calculated)
142790.0 Da
IEP (calculated)
6.894
GRAVY (calculated)
0.033
Length
1276 amino acids
Sequence
(BLAST)
(BLAST)
0001: MQKHFRHFHL AKPITADEMT LWSAPFRIII SVILLYEQLG VASLIGSFVL VLLFPIQTLV ISKMQKLSKE GLQRTDKRIS LMNEILAAMD TVKCYAWEQS
0101: FQSKVQSIRN DELSWFRSSQ LLAAFNTFIL NTIPVFVTVA SFGVYTLLGG DLTPAKAFTS LSLFAVLRFP LFMLPNLITQ VVNCNVSLQR LEDLLLAEER
0201: ILLPNPPIDP GLPAISIKNG YFSWDSQAER PTLANVNVDI PVGSLVAIVG STGEGKTSLI SAMLRELTPV AGTDTSVTIR GTVAYVPQVS WIFNATVREN
0301: ILFGYPFQPS QYEKAIEVTS LQHDLDLLPG GDLTEIGERG VNISGGQKQR VSMARAVYSD SDVYIFDDPL SALDAHVGRQ VFDKCINDQL RNKTRVLVTN
0401: QLHILPHVDK IILVHEGMVK EEGTFEELST SGIHFQKLME NAGKMEEQVD EKQGGNSEET AKSAENGDVS KTVNALLKSE EKTNRGKEGK SVLIKQEERE
0501: TGVVSLKVLA RYKNALGGMW VVLMLFSCYA LTEVLRVSSS TWLSVWTDQS SPKSHGAGFY NLIYSVLSLG QVLVTLTSSY WLIMSSLYAA KRLHDGMLHS
0601: ILRAPMVFFH TNPLGRIINR FAKDLGDIDR YVAVYVNMFL GQVSQLLSTF VLIGIVSTTS LWAIMPLLIL FYAAYLYYQS TAREVKRLDS ITRSPVYAQF
0701: SEALNGLSTI RAYKAYDRMA SINGKSMDNN VRFTLVNMSG NRWLAIRLET LGGIMIWFTA TFAVMQNQRA ENQKAFASTM GLLLTYALNI TNLLTAVLRL
0801: ASLAENSLNA VERVGTYIEL PSEAPPVIES NRPPPGWPSA GIIKFQDVVL RYRPELPPVL HGISFTIEGS EKIGIVGRTG AGKSSMLNAL FRIVELERGK
0901: IFIDDYDISK FGLWDLRKVL GIIPQSPVLF SGTVRFNLDP FNEHNDADLW EALERAHLKD VIRRNTMGLD AQHVMIVSSI LHSYSFKYLV SYIIWSCVNL
1001: SLYDYLFGLI AVDAISVAYK NTTEVSEAGE NFSVGQRQLL SLARALLRRS KILVLDEATA AVDVRTDALI QKTIREEFKS CTMLIIAHRL NTIIDCDRLL
1101: LLGAGKVLEF DTPETLLSKD DSAFSKMVQS TGTANAQYLR SLVFENMSSR EETKRQEGQR RWLASSRWVA AAQFALGVSL TSTQSDLQGL VIDDENNILR
1201: RTKDAVVTLQ SVLEGKHDNE IEEKLEEYHV PRDRWWSSLY RVVEGLAIMS KLSRNRLQQS GYAFGDRSLD WDQLEM
0101: FQSKVQSIRN DELSWFRSSQ LLAAFNTFIL NTIPVFVTVA SFGVYTLLGG DLTPAKAFTS LSLFAVLRFP LFMLPNLITQ VVNCNVSLQR LEDLLLAEER
0201: ILLPNPPIDP GLPAISIKNG YFSWDSQAER PTLANVNVDI PVGSLVAIVG STGEGKTSLI SAMLRELTPV AGTDTSVTIR GTVAYVPQVS WIFNATVREN
0301: ILFGYPFQPS QYEKAIEVTS LQHDLDLLPG GDLTEIGERG VNISGGQKQR VSMARAVYSD SDVYIFDDPL SALDAHVGRQ VFDKCINDQL RNKTRVLVTN
0401: QLHILPHVDK IILVHEGMVK EEGTFEELST SGIHFQKLME NAGKMEEQVD EKQGGNSEET AKSAENGDVS KTVNALLKSE EKTNRGKEGK SVLIKQEERE
0501: TGVVSLKVLA RYKNALGGMW VVLMLFSCYA LTEVLRVSSS TWLSVWTDQS SPKSHGAGFY NLIYSVLSLG QVLVTLTSSY WLIMSSLYAA KRLHDGMLHS
0601: ILRAPMVFFH TNPLGRIINR FAKDLGDIDR YVAVYVNMFL GQVSQLLSTF VLIGIVSTTS LWAIMPLLIL FYAAYLYYQS TAREVKRLDS ITRSPVYAQF
0701: SEALNGLSTI RAYKAYDRMA SINGKSMDNN VRFTLVNMSG NRWLAIRLET LGGIMIWFTA TFAVMQNQRA ENQKAFASTM GLLLTYALNI TNLLTAVLRL
0801: ASLAENSLNA VERVGTYIEL PSEAPPVIES NRPPPGWPSA GIIKFQDVVL RYRPELPPVL HGISFTIEGS EKIGIVGRTG AGKSSMLNAL FRIVELERGK
0901: IFIDDYDISK FGLWDLRKVL GIIPQSPVLF SGTVRFNLDP FNEHNDADLW EALERAHLKD VIRRNTMGLD AQHVMIVSSI LHSYSFKYLV SYIIWSCVNL
1001: SLYDYLFGLI AVDAISVAYK NTTEVSEAGE NFSVGQRQLL SLARALLRRS KILVLDEATA AVDVRTDALI QKTIREEFKS CTMLIIAHRL NTIIDCDRLL
1101: LLGAGKVLEF DTPETLLSKD DSAFSKMVQS TGTANAQYLR SLVFENMSSR EETKRQEGQR RWLASSRWVA AAQFALGVSL TSTQSDLQGL VIDDENNILR
1201: RTKDAVVTLQ SVLEGKHDNE IEEKLEEYHV PRDRWWSSLY RVVEGLAIMS KLSRNRLQQS GYAFGDRSLD WDQLEM
0001: MCRKQDQNIS TYLMFWWGGF WKIGNDCSQF VGPLLLNQLL KSMQEDAPAW MGYIYAFSIF VGVVFGVLCE AQYFQNVMRV GYRLRSALIA AVFRKSLRLT
0101: NEGRRKFQTG KITNLMTTDA ESLQQICQSL HTMWSAPFRI IIALILLYQQ LGVASLIGAL LLVLMFPLQT VIISKMQKLT KEGLQRTDKR IGLMNEVLAA
0201: MDTVKCYAWE NSFQSKVQTV RDDELSWFRK SQLLGALNMF ILNSIPVLVT IVSFGVFTLL GGDLTPARAF TSLSLFAVLR FPLFMLPNII TQVVNANVSL
0301: KRLEEVLATE ERILLPNPPI EPGEPAISIR NGYFSWDSKG DRPTLSNINL DVPLGSLVAV VGSTGEGKTS LISAILGELP ATSDAIVTLR GSVAYVPQVS
0401: WIFNATVRDN ILFGSPFDRE KYERAIDVTS LKHDLELLPG GDLTEIGERG VNISGGQKQR VSMARAVYSN SDVYIFDDPL SALDAHVGQQ VFEKCIKREL
0501: GQKTRVLVTN QLHFLSQVDR IVLVHEGTVK EEGTYEELSS NGPLFQRLME NAGKVEEYSE ENGEAEADQT AEQPVANGNT NGLQMDGSDD KKSKEGNKKG
0601: GKSVLIKQEE RETGVVSWRV LKRYQDALGG AWVVMMLLLC YVLTEVFRVT SSTWLSEWTD AGTPKSHGPL FYNLIYALLS FGQVLVTLTN SYWLIMSSLY
0701: AAKKLHDNML HSILRAPMSF FHTNPLGRII NRFAKDLGDI DRTVAVFVNM FMGQVSQLLS TVVLIGIVST LSLWAIMPLL VLFYGAYLYY QNTAREVKRM
0801: DSISRSPVYA QFGEALNGLS TIRAYKAYDR MADINGRSMD NNIRFTLVNM GANRWLGIRL ETLGGLMIWL TASFAVMQNG RAENQQAFAS TMGLLLSYAL
0901: NITSLLTGVL RLASLAENSL NAVERVGNYI EIPPEAPPVI ENNRPPPGWP SSGSIKFEDV VLRYRPQLPP VLHGVSFFIH PTDKVGIVGR TGAGKSSLLN
1001: ALFRIVEVEK GRILIDDCDV GKFGLMDLRK VLGIIPQSPV LFSGTVRFNL DPFGEHNDAD LWESLERAHL KDTIRRNPLG LDAEVSEAGE NFSVGQRQLL
1101: SLSRALLRRS KILVLDEATA AVDVRTDALI QKTIREEFKS CTMLIIAHRL NTIIDCDKIL VLDSGRVQEF SSPENLLSNE GSSFSKMVQS TGAANAEYLR
1201: SLVLDNKRAK DDSHHLQGQR KWLASSRWAA AAQFALAASL TSSHNDLQSL EIEDDSSILK RTNDAVVTLR SVLEGKHDKE IAESLEEHNI SREGWLSSLY
1301: RMVEGLAVMS RLARNRMQQP DYNFEGNTFD WDNVEM
0101: NEGRRKFQTG KITNLMTTDA ESLQQICQSL HTMWSAPFRI IIALILLYQQ LGVASLIGAL LLVLMFPLQT VIISKMQKLT KEGLQRTDKR IGLMNEVLAA
0201: MDTVKCYAWE NSFQSKVQTV RDDELSWFRK SQLLGALNMF ILNSIPVLVT IVSFGVFTLL GGDLTPARAF TSLSLFAVLR FPLFMLPNII TQVVNANVSL
0301: KRLEEVLATE ERILLPNPPI EPGEPAISIR NGYFSWDSKG DRPTLSNINL DVPLGSLVAV VGSTGEGKTS LISAILGELP ATSDAIVTLR GSVAYVPQVS
0401: WIFNATVRDN ILFGSPFDRE KYERAIDVTS LKHDLELLPG GDLTEIGERG VNISGGQKQR VSMARAVYSN SDVYIFDDPL SALDAHVGQQ VFEKCIKREL
0501: GQKTRVLVTN QLHFLSQVDR IVLVHEGTVK EEGTYEELSS NGPLFQRLME NAGKVEEYSE ENGEAEADQT AEQPVANGNT NGLQMDGSDD KKSKEGNKKG
0601: GKSVLIKQEE RETGVVSWRV LKRYQDALGG AWVVMMLLLC YVLTEVFRVT SSTWLSEWTD AGTPKSHGPL FYNLIYALLS FGQVLVTLTN SYWLIMSSLY
0701: AAKKLHDNML HSILRAPMSF FHTNPLGRII NRFAKDLGDI DRTVAVFVNM FMGQVSQLLS TVVLIGIVST LSLWAIMPLL VLFYGAYLYY QNTAREVKRM
0801: DSISRSPVYA QFGEALNGLS TIRAYKAYDR MADINGRSMD NNIRFTLVNM GANRWLGIRL ETLGGLMIWL TASFAVMQNG RAENQQAFAS TMGLLLSYAL
0901: NITSLLTGVL RLASLAENSL NAVERVGNYI EIPPEAPPVI ENNRPPPGWP SSGSIKFEDV VLRYRPQLPP VLHGVSFFIH PTDKVGIVGR TGAGKSSLLN
1001: ALFRIVEVEK GRILIDDCDV GKFGLMDLRK VLGIIPQSPV LFSGTVRFNL DPFGEHNDAD LWESLERAHL KDTIRRNPLG LDAEVSEAGE NFSVGQRQLL
1101: SLSRALLRRS KILVLDEATA AVDVRTDALI QKTIREEFKS CTMLIIAHRL NTIIDCDKIL VLDSGRVQEF SSPENLLSNE GSSFSKMVQS TGAANAEYLR
1201: SLVLDNKRAK DDSHHLQGQR KWLASSRWAA AAQFALAASL TSSHNDLQSL EIEDDSSILK RTNDAVVTLR SVLEGKHDKE IAESLEEHNI SREGWLSSLY
1301: RMVEGLAVMS RLARNRMQQP DYNFEGNTFD WDNVEM
Arabidopsis Description
ABCC2ABC transporter C family member 2 [Source:UniProtKB/Swiss-Prot;Acc:Q42093]
SUBAcon: [golgi]
SUBAcon: [golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.