CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	golgi, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02289	Canola	plasma membrane	98.28	98.34
CDX90247	Canola	plasma membrane	94.52	94.52
CDY12054	Canola	plasma membrane	94.4	94.45
CDX84290	Canola	plasma membrane	86.39	86.13
CDY31633	Canola	plasma membrane	86.21	86.1
KRH11151	Soybean	plasma membrane	74.57	74.75
KRH21096	Soybean	endoplasmic reticulum	74.51	74.69
Solyc08g006880.2.1	Tomato	nucleus	74.51	74.42
EES12878	Sorghum	plasma membrane	72.6	72.46
Zm00001d002275_P029	Maize	plasma membrane	72.11	71.88
GSMUA_Achr8P33250_001	Banana	endoplasmic reticulum, golgi, plastid	56.34	71.71
HORVU2Hr1G103620.1	Barley	plasma membrane	71.61	71.44
Os04t0620000-01	Rice	plasma membrane	71.24	71.11
CDY72149	Canola	cytosol, peroxisome, plasma membrane	26.6	70.59
TraesCS1A01G404300.1	Wheat	plasma membrane	67.8	68.51
CDX98202	Canola	plasma membrane	60.78	67.65
CDY09589	Canola	plasma membrane	60.47	65.77
GSMUA_Achr7P03410_001	Banana	endoplasmic reticulum, plasma membrane, plastid	57.14	63.78
CDY02290	Canola	plasma membrane	61.82	62.17
CDX77595	Canola	extracellular	5.85	47.26
CDY71198	Canola	endoplasmic reticulum, mitochondrion, plasma membrane	12.87	41.3
CDX82557	Canola	plasma membrane	12.62	40.84
CDY51899	Canola	endoplasmic reticulum, plasma membrane, vacuole	13.18	39.34
CDY39771	Canola	endoplasmic reticulum, plasma membrane, vacuole	24.82	37.66
CDX82552	Canola	plasma membrane	26.66	35.17
CDY23680	Canola	plasma membrane	28.14	34.08
CDX71911	Canola	plasma membrane	24.32	34.05
CDY63884	Canola	plasma membrane	25.8	34.04
CDY06021	Canola	plasma membrane	24.26	33.85
CDY64080	Canola	plasma membrane	26.85	33.26
CDX98408	Canola	plasma membrane	26.66	32.98
CDX76656	Canola	plasma membrane, plastid	29.43	32.32
CDY03309	Canola	golgi	28.45	32.2
CDY43395	Canola	plasma membrane	29.0	32.15
CDX89842	Canola	plasma membrane	29.74	32.03
CDY18207	Canola	plasma membrane	29.68	31.94
CDY11440	Canola	plastid	29.13	31.85
CDY43277	Canola	plastid	29.31	31.78
CDY37305	Canola	plasma membrane	27.52	31.48
CDY27531	Canola	plasma membrane	27.4	31.34
CDX93660	Canola	plastid	29.06	31.09
CDY01519	Canola	plasma membrane	27.16	30.82
CDY06441	Canola	plasma membrane	27.4	30.38
CDY44021	Canola	plastid	27.52	25.79
CDY23565	Canola	plastid	27.4	25.62

Protein Annotations

Gene3D:1.20.1560.10	MapMan:24.1.3.1.2	Gene3D:3.40.50.300	GO:A0A078F8D8	UniProt:A0A078F8D8	InterPro:AAA+_ATPase
InterPro:ABC1_TM_dom	InterPro:ABC1_TM_sf	InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	EnsemblPlants:CDY09591	ProteinID:CDY09591
ProteinID:CDY09591.1	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	GO:GO:0042626	GO:GO:0055085	EnsemblPlantsGene:GSBRNA2T00031209001
InterPro:IPR003439	InterPro:IPR011527	InterPro:IPR036640	InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF00664
ScanProsite:PS00211	PFscan:PS50893	PFscan:PS50929	PANTHER:PTHR24223	PANTHER:PTHR24223:SF251	SMART:SM00382
SUPFAM:SSF52540	SUPFAM:SSF90123	TMHMM:TMhelix	UniParc:UPI0004EC0FE8	SEG:seg	:

Description

BnaC05g23280DBnaC05g23280D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F8D8]

Coordinates

chrLK031997:-:671909..681779

Molecular Weight (calculated)

182472.0 Da

IEP (calculated)

6.618

GRAVY (calculated)

0.048

Length

1624 amino acids

Sequence
(BLAST)

0001: MGFKPLDWYC KPVPNGVWSK MVDYAFGAYT PCAIDSFVLG ISHLVLLILC VYRIWLTVKD HRVEKFCLRS KWYSYFLALL AAYSTAEPLF RLVMRISLLD
0101: LDAAGFPPYE AFMLGLEALA WGSALVMTVV ETKTYIRELR WYVRFAVIYA LLGDMVLLNL VLSVKEYYGS FKLYLYISEV AVQVAFGTLL FVYFPNLDPY
0201: AGYTPVPAET SEDYEYEELP GGEQICPERH ANLFDRIFFS WLNPLMTLGS KRPLTEKDVW HLDTWDRTET LMKCFQMSWE KELEKPKPWL LRALNNSLGG
0301: RFWWGGFWKI GNDCSQFVGP LLLNELLKSM QLNEPAWIGY IYAISIFVGV VLGVLCEAQY FQNVMRVGYR LRSALIAAVF RKSLRLTNEG RKKFQTGKIT
0401: NLMTTDAESL QQICQSLHTM WSAPFRIIVS LVLLYQQLGV ASLIGALFLV LMFPIQTVII SKTQKLTKEG LQRTDKRIGL MNEVLAAMDT VKCYAWENSF
0501: QSKVQTVRDD ELSWFRKAQL LSAFNMFILN SIPVFVTVVS FGVFSLLGGD LTPARAFTAL SLFSVLRFPL FMLPNIITQA VNAKVSLTRL EEVLSTEERV
0601: LLPNPPIEPG QPAISIRNGY FSWDSKAERP TLSNINLDVP VGSLVAVVGS TGEGKTSLIS AMLGELPAIS DAIVTLRGSV AYVPQVSWIF NATVRDNILF
0701: GAPFDKEKYE RVIDVTALRH DLELLPGGDL TEIGERGVNI SGGQKQRVSM ARAVYSNSDV CILDDPLSAL DAHVGQQVFE KCIKRELGDK TRVLVTNQLH
0801: FLSQVDKILL VHEGTVKEEG TYEELSQSGP LFQRLMENAG KVEEYSEENE EAEADQKSVK QVENGNTNII LQTNGIETKK SKEGNSVLVK REERETGVVS
0901: WKVLKRYQDA LGGGWVVMML LICYVLTQVF RVASSTWLSE WTDAGTPKSH GPLFYNLIYA ILSFGQVFVT LVNSYWLIMA SLYAAKKMHD AMLGSILRAP
1001: MVFFQTNPLG RIINRFAKDM GDIDRTVAVF VNMFMGSIAQ LLSTIILIGI VSTLSLWAIM PLLVVFYGAY LYYQNTSREV KRMDSVSRSP VYAQFGEALN
1101: GLSSIRAYKA YDRMAEINGR SMDNNIRFTL VNMGANRWLG IRLEVLGGLM VWLTASLAVM QNGKAENQQA FASTMGLLLS YALSITSSLT AVLRLASLAE
1201: NSLNSVERVG NYIETPSEAP LVIEKNRPPP GWPSSGSIKF QDVVLRYRPE LPPVLHEVSF FISPMDKVGI VGRTGAGKSS LLNALFRIVE LEKGRILIDE
1301: CDIGKFGLMD LRKVLGIIPQ APVLFSGTVR FNLDPFSEHN DADLWESLER AHLKDTIRRN PLGLDAEVTE AGENFSVGQR QLLSLARALL RRSKILVLDE
1401: ATAAVDVRTD VLIQKTIREE FKSCTMLIIA HRLNTIIDCD KVLVLDSGKV QEFSTPENLL SNGESSFSKM VQSTGPANAE YLRGLVLENK RIREANGDDS
1501: LQPLEGQRKW QASSRWAAAA QFALAVSLTS SHNDLQSLEI QDDNSILKRT KDAVVTLRSV LEGKHDKEID ESLTQNDISR ERWWPSLYKM VEGLAVMSRL
1601: AKNRMQHSEY SLEGRSFDWD NVEM

Best Arabidopsis Sequence Match ( AT1G30400.2 )
(BLAST)

0001: MGFEPLDWYC KPVPNGVWTK TVDYAFGAYT PCAIDSFVLG ISHLVLLILC LYRLWLITKD HKVDKFCLRS KWFSYFLALL AAYATAEPLF RLVMRISVLD
0101: LDGAGFPPYE AFMLVLEAFA WGSALVMTVV ETKTYIHELR WYVRFAVIYA LVGDMVLLNL VLSVKEYYGS FKLYLYISEV AVQVAFGTLL FVYFPNLDPY
0201: PGYTPVGTEN SEDYEYEELP GGENICPERH ANLFDSIFFS WLNPLMTLGS KRPLTEKDVW HLDTWDKTET LMRSFQKSWD KELEKPKPWL LRALNNSLGG
0301: RFWWGGFWKI GNDCSQFVGP LLLNELLKSM QLNEPAWIGY IYAISIFVGV VLGVLCEAQY FQNVMRVGYR LRSALIAAVF RKSLRLTNEG RKKFQTGKIT
0401: NLMTTDAESL QQICQSLHTM WSAPFRIIVA LVLLYQQLGV ASIIGALFLV LMFPIQTVII SKTQKLTKEG LQRTDKRIGL MNEVLAAMDT VKCYAWENSF
0501: QSKVQTVRDD ELSWFRKAQL LSAFNMFILN SIPVLVTVVS FGVFSLLGGD LTPARAFTSL SLFSVLRFPL FMLPNIITQM VNANVSLNRL EEVLSTEERV
0601: LLPNPPIEPG QPAISIRNGY FSWDSKADRP TLSNINLDIP LGSLVAVVGS TGEGKTSLIS AMLGELPARS DATVTLRGSV AYVPQVSWIF NATVRDNILF
0701: GAPFDQEKYE RVIDVTALQH DLELLPGGDL TEIGERGVNI SGGQKQRVSM ARAVYSNSDV CILDDPLSAL DAHVGQQVFE KCIKRELGQT TRVLVTNQLH
0801: FLSQVDKILL VHEGTVKEEG TYEELCHSGP LFQRLMENAG KVEDYSEENG EAEVDQTSVK PVENGNANNL QKDGIETKNS KEGNSVLVKR EERETGVVSW
0901: KVLERYQNAL GGAWVVMMLV ICYVLTQVFR VSSSTWLSEW TDSGTPKTHG PLFYNIVYAL LSFGQVSVTL INSYWLIMSS LYAAKKMHDA MLGSILRAPM
1001: VFFQTNPLGR IINRFAKDMG DIDRTVAVFV NMFMGSIAQL LSTVILIGIV STLSLWAIMP LLVVFYGAYL YYQNTSREIK RMDSTTRSPV YAQFGEALNG
1101: LSSIRAYKAY DRMAEINGRS MDNNIRFTLV NMAANRWLGI RLEVLGGLMV WLTASLAVMQ NGKAANQQAY ASTMGLLLSY ALSITSSLTA VLRLASLAEN
1201: SLNSVERVGN YIEIPSEAPL VIENNRPPPG WPSSGSIKFE DVVLRYRPEL PPVLHGVSFL ISPMDKVGIV GRTGAGKSSL LNALFRIVEL EKGRILIDEC
1301: DIGRFGLMDL RKVLGIIPQA PVLFSGTVRF NLDPFSEHND ADLWESLERA HLKDTIRRNP LGLDAEVTEA GENFSVGQRQ LLSLARALLR RSKILVLDEA
1401: TAAVDVRTDV LIQKTIREEF KSCTMLIIAH RLNTIIDCDK VLVLDSGKVQ EFSSPENLLS NGESSFSKMV QSTGTANAEY LRSITLENKR TREANGDDSQ
1501: PLEGQRKWQA SSRWAAAAQF ALAVSLTSSH NDLQSLEIED DNSILKKTKD AVVTLRSVLE GKHDKEIEDS LNQSDISRER WWPSLYKMVE GLAVMSRLAR
1601: NRMQHPDYNL EGKSFDWDNV EM

Arabidopsis Description

ABCC1ABC transporter C family member 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8G9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.