Factsheet for GSMUA_Achr5P05550_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plastid, mitochondrion

Predictor Summary:

nucleus 1
endoplasmic reticulum 1
mitochondrion 3
cytosol 1
vacuole 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr6P08880_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G64350.1	GSMUA_Achr6P08880_001	AT3G54170.1	9807817

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0017g01060.t01	Wine grape	cytosol, mitochondrion, plastid	62.81	67.86
EES07562	Sorghum	cytosol, mitochondrion, plastid	61.16	66.07
KRH21780	Soybean	cytosol, mitochondrion, plastid	58.68	63.39
Zm00001d018134_P001	Maize	mitochondrion	57.85	62.5
Os02t0760300-01	Rice	extracellular	57.85	62.5
AT5G64350.1	Thale cress	cytosol, mitochondrion, plastid	55.37	59.82
Solyc01g105710.2.1	Tomato	extracellular	54.55	58.93
PGSC0003DMT400083778	Potato	cytosol	54.55	58.93
Bra037775.1-P	Field mustard	cytosol, mitochondrion, plastid	53.72	58.04
Bra024287.1-P	Field mustard	cytosol, mitochondrion, plastid	52.07	56.25
KRH10589	Soybean	cytosol	58.68	50.71
CDY02979	Canola	mitochondrion	37.19	38.14
TraesCS6D01G293400.1	Wheat	cytosol	60.33	37.44
TraesCS6A01G314100.1	Wheat	plastid	59.5	37.31
TraesCS6B01G344100.1	Wheat	plastid	59.5	36.92
HORVU6Hr1G077340.1	Barley	mitochondrion	58.68	29.46
GSMUA_AchrUn_...	Banana	nucleus	23.97	15.43
GSMUA_Achr10P...	Banana	cytosol	33.06	7.12
GSMUA_Achr7P22780_001	Banana	cytosol	32.23	7.1
GSMUA_Achr6P27770_001	Banana	cytosol	33.06	6.92
GSMUA_AchrUn_...	Banana	cytosol	32.23	6.71
GSMUA_Achr8P04930_001	Banana	cytosol	29.75	5.67
GSMUA_Achr6P12690_001	Banana	cytosol	16.53	5.35
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, nucleus	22.31	4.33

Protein Annotations

MapMan:18.12.2	Gene3D:3.10.50.40	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016853	GO:GO:0019538
EnsemblPlantsGene:GSMUA_Achr5G05550_001	EnsemblPlants:GSMUA_Achr5P05550_001	EnsemblPlants:GSMUA_Achr5T05550_001	InterPro:IPR001179	UniProt:M0SVY4	PFAM:PF00254
InterPro:PPIase_FKBP	InterPro:PPIase_FKBP_dom	PFscan:PS50059	PANTHER:PTHR10516	PANTHER:PTHR10516:SF214	SUPFAM:SSF54534
UniParc:UPI000294A4AA	:	:	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr5G05550_001]

Coordinates

chr5:-:4123106..4127480

Molecular Weight (calculated)

13258.1 Da

IEP (calculated)

8.792

GRAVY (calculated)

-0.196

Length

121 amino acids

Sequence
(BLAST)

001: MGVEKQLLKA GHGPKPVRGQ SVTVHCTGFG KDGDLSKKFW STKDPGQQPF TFKVGLGSVI KGWDEGVMDM QVGEVARLQN DARSQVGDLI HHFISCPFNV
101: PQIMLMELMA FQLGVSVQTR S

Best Arabidopsis Sequence Match ( AT5G64350.1 )
(BLAST)

001: MGVEKQVIRP GNGPKPAPGQ TVTVHCTGFG KDGDLSQKFW STKDEGQKPF SFQIGKGAVI KGWDEGVIGM QIGEVARLRC SSDYAYGAGG FPAWGIQPNS
101: VLDFEIEVLS VQ

Arabidopsis Description

FKBP12Peptidyl-prolyl cis-trans isomerase FKBP12 [Source:UniProtKB/Swiss-Prot;Acc:Q8LGG0]
SUBAcon: [cytosol,plastid,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.