CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 3
peroxisome 2
plasma membrane 1
vacuole 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH42713	Soybean	cytosol	95.79	95.79
GSMUA_Achr6P27770_001	Banana	cytosol	77.54	76.47
KRH46622	Soybean	cytosol, nucleus	72.46	75.92
KRG99620	Soybean	cytosol	72.11	75.55
KRH66151	Soybean	nucleus	75.79	74.23
KRH07424	Soybean	cytosol	74.56	74.04
KRH66687	Soybean	cytosol	49.65	52.41
KRG95045	Soybean	cytosol	12.63	52.17
KRG88759	Soybean	cytosol	48.6	47.59
KRH05556	Soybean	cytosol	47.54	46.48
KRH21780	Soybean	cytosol, mitochondrion, plastid	8.77	44.64
KRH10589	Soybean	cytosol	8.77	35.71
KRG97894	Soybean	cytosol	11.05	33.51
KRH30990	Soybean	cytosol	11.05	33.51
KRH23877	Soybean	cytosol, endoplasmic reticulum, nucleus	18.95	29.19
KRH39924	Soybean	endoplasmic reticulum	18.6	28.65
KRH62430	Soybean	cytosol	30.35	27.81
KRH75755	Soybean	cytosol, endoplasmic reticulum	30.18	27.65

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100810243	MapMan:18.12.2	Gene3D:3.10.50.40	Gene3D:3.30.1670.20	EMBL:ACUP02003292
ncoils:Coil	EnsemblPlantsGene:GLYMA_05G149900	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005528	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016853
GO:GO:0019538	GO:GO:0061077	UniProt:I1K3Q2	InterPro:IPR001179	InterPro:IPR011990	InterPro:IPR013026
InterPro:IPR019734	EnsemblPlants:KRH58815	ProteinID:KRH58815	ProteinID:KRH58815.1	PFAM:PF00254	PFAM:PF13432
InterPro:PPIase_FKBP	InterPro:PPIase_FKBP_dom	PFscan:PS50005	PFscan:PS50059	PFscan:PS50293	PANTHER:PTHR10516
PANTHER:PTHR10516:SF338	SMART:SM00028	SUPFAM:SSF48452	SUPFAM:SSF54534	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf
InterPro:TPR_repeat	UniParc:UPI00023396D7	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:34389242..34393621

Molecular Weight (calculated)

64117.5 Da

IEP (calculated)

5.036

GRAVY (calculated)

-0.633

Length

570 amino acids

Sequence
(BLAST)

001: MGEDFEFPSA GNMEMPEEEE FESPILKVGE EKEIGKMGLK KKLLKEGEGW DTPDSGDQVE VHYTGTLLDG TKFDSSRDRG TPFKFKLGQG QVIKGWDEGI
101: KTMKKGENAL FTIPPELAYG ESGSPPTIPP NATLQFDVEL LSWTSVKDIC KDGGILKNII TEGEKWDNPK DLDEVFVKFE ARLEDGTVIS KSDGVEFTVE
201: EGYFCPALAK AVKTMKKGEK VLLNVKPQYA FGESGRPALG DEGAVPPNAY LQLDLELVSW KTVSDITKDR KVLKKTLKEG EGYERPNDGA VVQVKLIGKL
301: QDGTVFVKKG YVDEQPFEFK IDEEQVIDGL DQAVKNMKKG EIALLIIQPE YAFGPSGSSQ ELANVPPNST VYYEVELLSF VKEKESWDLN TQEKIEAAGK
401: KKEEGNAFFK VGKYERASKR YEKAIKFVEY DSSFSDEEKQ QTKALKITCN LNNAACKLKL KDYKQAEKMC TKVLELDSRN VKALYRRAQA YLHLVDLDLA
501: EMDIKKALEI EPNNRDVKME YKILKQKVRE HNKKDAQFYG SIFAKMNKLE QARTATAKQE PVPMTIDSKA

Best Arabidopsis Sequence Match ( AT3G54010.1 )
(BLAST)

001: MAVGDQTEQN YLPKKKKSET EDDKRRKKIV PGSLLKAVVR PGGGDSSPVD GDQVIYHCTV RTLDGVVVES TRSESGGRGV PIRDVLGNSK MILGLLEGIP
101: TMHKGEIAMF KMKPEMHYAE IDCPVSAPEN FPKDDELHFE IELLDFSKAK IASDDLGVIK KILNEGEGWE SPREPYEVKA RISAKSGDGH VIFSHTEEPY
201: FFTFGKSEVP KGLEIGIGTM ARKEKAVIYV RKQYLTESPL LHIDQDLEEV HFEVELVHFI QVRDMLGDGR LIKRRIRDGR GEFPMDCPLQ DSRLSVHYKG
301: MLLNEEKTVF YDSKIDNNDQ PLEFSSGEGL VPEGFEMCTR LMLPGEIALV TCPPDYAYDK FPRPPGVSEG AHVQWEIELL GFETPRDWTG LNFQSIMDEA
401: DKIRSTGNRL FKEGKFELAK AKYEKVLREF NHVNPQDEDE GKIFGDTRNM LHLNVAACLL KMGEWRKSIE TCNKVLEAKP GHVKGLYRRG MAYIAGGEYD
501: DARNDFNMMI KVDKSSEADA TAALLKLKQK EQEAESKARK QFKGLFDKRP GEITEVGSEI REESKTIEEV DETKDNDDDE TLEEEGATTV STERKRKWSE
601: KAWPFLKNVM LQIGIQLGVV LIGILIFQFV SAKFT

Arabidopsis Description

PAS1Peptidyl-prolyl cis-trans isomerase PASTICCINO1 [Source:UniProtKB/Swiss-Prot;Acc:Q7DMA9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.