Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU4Hr1G086310.1 | Barley | cytosol | 8.5 | 31.71 |
| HORVU4Hr1G084370.1 | Barley | cytosol | 5.23 | 27.59 |
| HORVU5Hr1G076190.1 | Barley | cytosol, peroxisome | 13.83 | 24.47 |
| Os11t0679000-00 | Rice | cytosol | 14.92 | 23.62 |
| HORVU5Hr1G001270.2 | Barley | cytosol | 9.04 | 23.12 |
| HORVU7Hr1G001030.5 | Barley | cytosol | 13.18 | 23.05 |
| HORVU1Hr1G092690.1 | Barley | cytosol | 13.94 | 22.9 |
| HORVU1Hr1G038870.1 | Barley | plastid | 15.47 | 22.22 |
| HORVU6Hr1G057680.2 | Barley | cytosol, mitochondrion, nucleus | 16.78 | 21.63 |
| HORVU4Hr1G001800.2 | Barley | cytosol | 10.78 | 21.48 |
| HORVU2Hr1G088110.4 | Barley | cytosol, mitochondrion | 16.01 | 21.0 |
| HORVU5Hr1G070100.1 | Barley | cytosol | 11.98 | 20.95 |
| HORVU5Hr1G001450.1 | Barley | cytosol | 11.98 | 20.95 |
| HORVU0Hr1G036570.1 | Barley | mitochondrion | 8.71 | 20.94 |
| HORVU0Hr1G005150.3 | Barley | cytosol, vacuole | 16.45 | 20.57 |
| HORVU4Hr1G084340.1 | Barley | mitochondrion | 15.47 | 20.08 |
| HORVU6Hr1G088580.4 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole | 15.9 | 19.68 |
| HORVU4Hr1G084330.1 | Barley | cytosol | 15.8 | 19.18 |
| HORVU7Hr1G098290.1 | Barley | cytosol, peroxisome, plasma membrane | 13.29 | 16.94 |
| HORVU4Hr1G084380.2 | Barley | cytosol | 8.06 | 13.14 |
| HORVU0Hr1G022100.1 | Barley | cytosol | 6.75 | 8.62 |
| GSMUA_Achr4P06340_001 | Banana | mitochondrion | 0.76 | 3.65 |
Protein Annotations
| EnsemblPlants:HORVU2Hr1G118990.1 | EnsemblPlantsGene:HORVU2Hr1G118990 | Gene3D:3.40.50.410 | InterPro:IPR002035 | InterPro:IPR036465 | InterPro:VWF_A |
| InterPro:vWFA_dom_sf | ncoils:Coil | PANTHER:PTHR10579 | PANTHER:PTHR10579:SF57 | PFAM:PF00092 | PFscan:PS50234 |
| SEG:seg | SMART:SM00327 | SUPFAM:SSF53300 | UniParc:UPI000294862E | UniProt:M0UHA2 | MapMan:35.2 |
Description
No Description!
Coordinates
chrchr2H:-:743758303..743761790
Molecular Weight (calculated)
101219.0 Da
IEP (calculated)
7.309
GRAVY (calculated)
-0.292
Length
918 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGPGQKPAL QATATAAHKH QVEQVTVSTI PTVKEVAQAG TKDLEVLVRV QAPTKATERV PIDLVAVLEM SDSMNWLPDS NDVAKDGKQS RLDLLKVAVK
101: FVVSKLRGSD RLATVAFNGV VVKQFTTELK EIPDDRRKAE LDFVDNITAD SSNCLFGPAL EKAVEILDNR TNKSRPGFIM FFSDRGESEV NAKATWAPEK
201: YRSKIIWYKV SKDTTNKTTS EVHGMLRKYP VHTFGFGKFH WPKAMHAIST LSGGTYSFLN EDHDKITQAF GFCLGGLQTV VAADIKINLT VQPDNPEVRI
301: TDIHSGGYEN YFPQDGRSGI ITIPVLYAGE VKEFIVHIKV APSGGTKQLL LTANGKCATW GLDGRVDAQI QFHDLNIERP QPVGKNQQQQ QDGKVIEQVL
401: RFKVLKMLSD FLQAMKSKGV NMEKDKETPV NSLVGLWNRV KTENPSIVQR YDVSVQAMLA NLRKGDGGAF LCAWQSSNGM QRVTTMGSPG KVVDEYMTPA
501: IQKMGEEAQK LLVEILAPPP PSEGCACLEF DMLIEQQIAY WSTVKLNRGQ LRTVQQPVEV ELGHNNPRSC YCCATRIHDV TAWYDGEERS VTPQLLVGAS
601: GVRRTATKGT PAITTVAVEL PTDGIRPAVE ITGQVPAEKK GRNACYTRGL GGHTHHISAN SDALLCDYCQ KAGHPRDECA LLYMPKPVMT MYGVCSRGLM
701: FFETKRSPFV NDAKQAGMVR VKNGTLSAAQ VVAQLHRLVP VDFHWDVLDL GEGNFRVDFP NKAELTRLIV FGEFKDPHSP CLLQFAEWTN TEVVPYSLQD
801: VWVSFHGVPS KAYDDFFALW DVGSLIGKTK ALGMPFSPQL NVLRSLVGVI NVDAIPRSTR WFYDEQGFEL RIVVEDGAHW PNGPNDANDN NSDHVNGESN
901: NKQTAARSSG AVAGSQLA
101: FVVSKLRGSD RLATVAFNGV VVKQFTTELK EIPDDRRKAE LDFVDNITAD SSNCLFGPAL EKAVEILDNR TNKSRPGFIM FFSDRGESEV NAKATWAPEK
201: YRSKIIWYKV SKDTTNKTTS EVHGMLRKYP VHTFGFGKFH WPKAMHAIST LSGGTYSFLN EDHDKITQAF GFCLGGLQTV VAADIKINLT VQPDNPEVRI
301: TDIHSGGYEN YFPQDGRSGI ITIPVLYAGE VKEFIVHIKV APSGGTKQLL LTANGKCATW GLDGRVDAQI QFHDLNIERP QPVGKNQQQQ QDGKVIEQVL
401: RFKVLKMLSD FLQAMKSKGV NMEKDKETPV NSLVGLWNRV KTENPSIVQR YDVSVQAMLA NLRKGDGGAF LCAWQSSNGM QRVTTMGSPG KVVDEYMTPA
501: IQKMGEEAQK LLVEILAPPP PSEGCACLEF DMLIEQQIAY WSTVKLNRGQ LRTVQQPVEV ELGHNNPRSC YCCATRIHDV TAWYDGEERS VTPQLLVGAS
601: GVRRTATKGT PAITTVAVEL PTDGIRPAVE ITGQVPAEKK GRNACYTRGL GGHTHHISAN SDALLCDYCQ KAGHPRDECA LLYMPKPVMT MYGVCSRGLM
701: FFETKRSPFV NDAKQAGMVR VKNGTLSAAQ VVAQLHRLVP VDFHWDVLDL GEGNFRVDFP NKAELTRLIV FGEFKDPHSP CLLQFAEWTN TEVVPYSLQD
801: VWVSFHGVPS KAYDDFFALW DVGSLIGKTK ALGMPFSPQL NVLRSLVGVI NVDAIPRSTR WFYDEQGFEL RIVVEDGAHW PNGPNDANDN NSDHVNGESN
901: NKQTAARSSG AVAGSQLA
001: MVSKWKKMKL ALSLNLCNYL PRTLEEEPPS LALNSAETLS DAALLSPLNW PMTPTPSSYR RRLSRSSSKS SKTCSICLNK MKEGCGHAIF TAECSHMFHF
101: HCIASNVKHG NQVCPVCRAK WKEIPIQKPS LDLPYYPFDR CNNDAAISLF RCLPPSQRAI TQGHPEPATF DDDERLEEQI VFDGETEVLK KENRDYVRMM
201: DMKVYPEVSA VPQSKSCENF DVLVHLKAVT GDQISQYRRA PIDLVTVLDI SGSMGGTKLA LLKRAMGFVI QNLGSSDRLS VIAFSSTARR LFPLTRMSDA
301: GRQLALQAVN SLVANGGTNI VDGLRKGAKV MEDRLERNSV ASIILLSDGR DTYTTNHPDP SYKVMLPQIS VHSFGFGSDH DASVMHSVSE VSGGTFSFIE
401: SESVIQDALA QCIGGLLSVA VQELRVEIEG VSPNVRLSSI KAGSYSSLVT GDGHSGLVDL GDLYADEERD FLVSINIPVE EDGHTPLLKL RCLYINPLTK
501: EITTLESHVL QIRRPEYVAE EKVVPIEVVR QRNRFLAAEA MAQARTLAEH GDLEAAVKAI ENFRLVLAET VAAKSCDRFC VALDSELKEM QGRMRSSHMY
601: EASGRAYILS GLSSHSWQRA TARGNSRDSS SFVQAYQTPS MAEMLRRSQA MFLVSPSHHR LIQPLLSFAS QPKPR
101: HCIASNVKHG NQVCPVCRAK WKEIPIQKPS LDLPYYPFDR CNNDAAISLF RCLPPSQRAI TQGHPEPATF DDDERLEEQI VFDGETEVLK KENRDYVRMM
201: DMKVYPEVSA VPQSKSCENF DVLVHLKAVT GDQISQYRRA PIDLVTVLDI SGSMGGTKLA LLKRAMGFVI QNLGSSDRLS VIAFSSTARR LFPLTRMSDA
301: GRQLALQAVN SLVANGGTNI VDGLRKGAKV MEDRLERNSV ASIILLSDGR DTYTTNHPDP SYKVMLPQIS VHSFGFGSDH DASVMHSVSE VSGGTFSFIE
401: SESVIQDALA QCIGGLLSVA VQELRVEIEG VSPNVRLSSI KAGSYSSLVT GDGHSGLVDL GDLYADEERD FLVSINIPVE EDGHTPLLKL RCLYINPLTK
501: EITTLESHVL QIRRPEYVAE EKVVPIEVVR QRNRFLAAEA MAQARTLAEH GDLEAAVKAI ENFRLVLAET VAAKSCDRFC VALDSELKEM QGRMRSSHMY
601: EASGRAYILS GLSSHSWQRA TARGNSRDSS SFVQAYQTPS MAEMLRRSQA MFLVSPSHHR LIQPLLSFAS QPKPR
Arabidopsis Description
Zinc finger (C3HC4-type RING finger) family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LN98]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.