Factsheet for TraesCS7A01G010300.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, nucleus

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, unclear
Any Predictor:	cytosol, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

unclear: 25769308
nucleus: 26579155

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 26579155 doi

T Bonnot, E Bancel, C Chambon, J Boudet, G Branlard, P Martre

Metabolism Exploration Platform Proteomic Component, Institut National de la Recherche Agronomique Saint-Genès Champanelle, France., UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Institut National de la Recherche Agronomique Clermont-Ferrand, France ; UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Blaise Pascal University Aubière, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G484700.1	Wheat	cytosol, unclear	95.42	95.42
HORVU7Hr1G001030.5	Barley	cytosol	85.5	85.33
TraesCS5A01G011700.1	Wheat	cytosol	60.88	60.65
TraesCS5A01G011500.1	Wheat	cytosol	57.63	60.4
Zm00001d024886_P002	Maize	cytosol	46.95	47.67
Zm00001d024014_P001	Maize	cytosol	45.42	47.32
KXG20893	Sorghum	cytosol, plastid	46.76	40.1
TraesCS5A01G284900.1	Wheat	cytosol, mitochondrion, plastid	15.08	27.43
TraesCS7A01G426800.1	Wheat	cytosol, peroxisome, plasma membrane	37.02	26.76
TraesCS6A01G006500.1	Wheat	cytosol, endoplasmic reticulum, peroxisome	35.88	26.59
TraesCS5A01G513100.1	Wheat	cytosol, plastid	23.86	25.3
TraesCS5A01G359200.1	Wheat	cytosol, peroxisome, plastid	25.19	25.19
TraesCS7A01G423300.1	Wheat	cytosol	27.1	23.99
TraesCS3A01G393700.1	Wheat	cytosol	23.47	23.34
TraesCS2A01G358400.2	Wheat	cytosol, nucleus, peroxisome	26.53	21.29
TraesCS6A01G227300.1	Wheat	mitochondrion	28.24	20.82
TraesCS5A01G512800.2	Wheat	mitochondrion	27.29	20.23
TraesCS1A01G421500.1	Wheat	plastid	24.24	20.19
TraesCS2A01G364100.2	Wheat	cytosol, mitochondrion	26.72	20.11
TraesCS5A01G513000.1	Wheat	cytosol	27.48	19.46
TraesCS6A01G375500.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	25.57	18.23
TraesCS1A01G146700.1	Wheat	mitochondrion	20.61	16.64
TraesCS5A01G011800.1	Wheat	plastid	21.95	13.55
TraesCS2A01G045100.1	Wheat	peroxisome	19.27	13.29
TraesCS5A01G178300.1	Wheat	mitochondrion	12.4	12.33

Protein Annotations

EnsemblPlants:TraesCS7A01G010300.1	EnsemblPlantsGene:TraesCS7A01G010300	Gene3D:3.40.50.410	InterPro:IPR002035	InterPro:IPR036465	InterPro:VWF_A
InterPro:Vwaint_dom	InterPro:vWFA_dom_sf	ncoils:Coil	PANTHER:PTHR10579	PANTHER:PTHR10579:SF64	PFAM:PF00092
PFAM:PF14624	PFscan:PS50234	SEG:seg	SMART:SM00327	SUPFAM:SSF53300	MapMan:35.2

Description

No Description!

Coordinates

chr7A:-:4686017..4687823

Molecular Weight (calculated)

55367.4 Da

IEP (calculated)

4.526

GRAVY (calculated)

-0.224

Length

524 amino acids

Sequence
(BLAST)

001: MAFNDDEKPP ASNVGSTKGL VTISTPTYSK DAAALTADAV TAVVELNATS STAVREGLDL VAVLDVSGSM QGDKLQSMKR AMQFVIMKLT PVDRLSVISF
101: ASSANRHCPL RSVTQQAQTD LKSIVDGLVA NGGTNIKAGL DTALAVIAGR ATTKARTPNI FLMSDGQQSD GDARQVDPGN VAVYTFGFGK DADHALLSDV
201: AKKSPGGTFN SVPDGGNVSA PFSQLLGGLL TIVAQDVQLT LTPKAEDPSA PDLDTMTVAP GTDYTQTTDG NTGVITIKFG TLFSGETRKV AINLKLLEST
301: LTTAYDGLVA EAQHSYTVQG SPQGQTPQDI VIPRSPDAPA DPPTSGKAQA VLAEMARRQH AGAIGEARQM ADGKNLEEAR YKLADAQNAL EDIVLNDGEK
401: LVGMLRAELQ QLLDLMETQE LYEAEGRPYA LASETSHGRQ RYAARGGDMD AVRLFATPRM DTYLEQAKKF EEDPTAPLPS ADDDAKEEMA ANPLAAISAP
501: IAFYIKVAIQ ALQEIEKLVA PPTK

Best Arabidopsis Sequence Match ( AT5G60710.1 )
(BLAST)

001: MGSKWRKAKV ALGLNLCLYV PKTLEDSSPP RRSDDAVSLS PVIVQRPSTP TPSSSGLRLP RSMSKSSSKK TCAICLTAMK AGQGHAIFTA ECSHSFHFQC
101: ITTNVKHGNQ ICPVCRAKWN EIPIQSPNAK PKSGVKPIGR PRDDAWMSIP PRRSSPIQYT SRPDCLRVSS IFNTEPAVFN DDEALEHQDR SAESGLDKPG
201: VTGTLEVKTY PEISEVVRSV SFKDFAVLIN LKAPTSSKSS SNPSSSSRAP VDLVTVLDVS GSMAGTKLAL LKRAMGFVIQ NLGPFDRLSV ISFSSTARRN
301: FPLRLMTETG KQEALQAVNS LVSNGGTNIA EGLKKGARVL IDRRFKNPVS SIVLLSDGQD TYTMTSPNGS RGTDYKALLP KEINGNRIPV HAFGFGADHD
401: ASLMHSIAEN SGGTFSFIES ETVIQDAFAQ CIGGLLSVVV QELCVTIECM HHLLRIGSVK AGSYRFDNGP NSRTGSIAVG DLYAEEERNF LVNLDIPIVD
501: GVSDVMSLLK VQCVYKDPVT KETVNLNNSG EVKILRPIVM TERRPVVSVE VDRQRIRLRA AEAISEARVL AERGDLTEAV SVLETCRGLL TESVSGRAGD
601: QLCVTLCAEL KEMQERMASR QVYEASGRAY VLAGLSSHSW QRATARGDMS DSTTTSYQTQ SMVDMVNLSQ TMTFGMPIAS SNSSPSGQRK LRQALSFPAK
701: PRPR

Arabidopsis Description

Retroelement pol polyprotein-like [Source:UniProtKB/TrEMBL;Acc:Q9FF49]
SUBAcon: [mitochondrion,plastid,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.