Factsheet for TraesCS1A01G146700.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 5
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d032750_P001	Maize	plastid	43.61	45.06
EER91513	Sorghum	mitochondrion	48.07	44.32
Zm00001d014084_P001	Maize	mitochondrion	46.38	42.82
TraesCS5A01G512800.2	Wheat	mitochondrion	43.61	40.03
TraesCS2A01G364100.2	Wheat	cytosol, mitochondrion	38.37	35.78
TraesCS6A01G227300.1	Wheat	mitochondrion	37.9	34.6
TraesCS2A01G358400.2	Wheat	cytosol, nucleus, peroxisome	33.74	33.54
TraesCS6A01G375500.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	37.29	32.93
TraesCS7A01G423300.1	Wheat	cytosol	29.58	32.43
TraesCS3A01G393700.1	Wheat	cytosol	26.04	32.07
TraesCS5A01G284900.1	Wheat	cytosol, mitochondrion, plastid	14.02	31.6
TraesCS5A01G359200.1	Wheat	cytosol, peroxisome, plastid	24.96	30.92
TraesCS5A01G513100.1	Wheat	cytosol, plastid	23.27	30.57
TraesCS5A01G513000.1	Wheat	cytosol	33.74	29.59
TraesCS1A01G421500.1	Wheat	plastid	26.35	27.19
Os10t0464500-00	Rice	extracellular, plasma membrane	15.72	20.99
TraesCS4A01G484700.1	Wheat	cytosol, unclear	16.8	20.8
TraesCS7A01G010300.1	Wheat	nucleus, unclear	16.64	20.61
TraesCS5A01G011700.1	Wheat	cytosol	16.64	20.53
TraesCS5A01G011500.1	Wheat	cytosol	15.56	20.2
TraesCS5A01G178300.1	Wheat	mitochondrion	16.33	20.11
TraesCS2A01G045100.1	Wheat	peroxisome	22.19	18.95
TraesCS6A01G006500.1	Wheat	cytosol, endoplasmic reticulum, peroxisome	17.1	15.7
TraesCS7A01G426800.1	Wheat	cytosol, peroxisome, plasma membrane	15.41	13.79
TraesCS5A01G011800.1	Wheat	plastid	16.02	12.25

Protein Annotations

Gene3D:3.30.40.10	Gene3D:3.40.50.410	MapMan:35.1	InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083
InterPro:IPR036465	PFAM:PF13768	PFAM:PF14624	PFAM:PF17123	PFscan:PS50089	PFscan:PS50234
PANTHER:PTHR10579	PANTHER:PTHR10579:SF98	SMART:SM00184	SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850
EnsemblPlantsGene:TraesCS1A01G146700	EnsemblPlants:TraesCS1A01G146700.1	InterPro:VWF_A	InterPro:Vwaint_dom	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
TIGR:cd16448	SEG:seg	InterPro:vWFA_dom_sf	:	:	:

Description

No Description!

Coordinates

chr1A:-:253014156..253017193

Molecular Weight (calculated)

69106.7 Da

IEP (calculated)

6.912

GRAVY (calculated)

0.018

Length

649 amino acids

Sequence
(BLAST)

001: MAVAWEHAWR ALAARLCIPS RAQCAGGTTG ALLEDDESPD ALSPVPVCKQ AVSRSGSRSS TELCAICLGG MRPGHGHALF TAECSHKFHF RCISSNVQHG
101: NRACPICRAV WKHLPLPAKA DATPLDWPDD QLPVSCAPDL SVFESKTTSG KREEDAVGAS GVEVVSFAEF PYIQRSVTSE KFDILIHLKA PRPPAPSASS
201: HTGAAIDILA VLDLSGSMAG NKLALLTRVL SFVIKSLGPN DRLSVIAFRH SAWSLFPFRK MTAAGRRHSF QALADGLPVA GGVSNVAEAL RKAAWVTGDR
301: QVRNPACSVL LLSDGLGGRE AATWQCGRPS LVYDALVPRS ICPGSGHHVR VHAFGLGAYQ DSAVMRGIAE MSGGTFSSID TVGEIPDVVG RYIGGLRSVV
401: AQETRLSFHC AEQGVLLTCV ASGGYASTVD GHKGGEFVDV GDLYAGEERN ILVTVHVPTT HGKDSALLVP SCTYRVAVTM ETVCIEGDTV IVHRPRHPVS
501: PSPLSVEVER ERHRISAMEG MAMAWNAVEL GDFVHAAMIL EGRRVELESW ALLSVDAPTL ALVAELREFQ DRLGTRQRYK RSGRAYILAA LNAHPWQCVT
601: ASGGDSGLLL PEAVEELTRS TPVAPSSILT LPVGQDDQGS PGGTMTLTC

Best Arabidopsis Sequence Match ( AT1G08050.1 )
(BLAST)

001: MENPNNLRES KSHLNLNECL TLPKTLDPSS PSPSDASRSS VDPNRPDSSS SRPGSTPSSS GLRFSKGRCA ICLYEIRKED GKAIFTAECS HSFHFDCITS
101: NVKHGNRICP LCRTQWKQVP LCDVDSVPTF VAQRGFEDDE PLPQGDTQIH SDGHRSDHQA LEIKLFPEVS ALAKPVSRAD FAVLVHLKAE GVSDDARRAR
201: APLDLITVLD VSGSMDGVKM ELMKNAMSFV IQNLGETDRL SVISFSSMAR RLFPLRLMSE TGKQAAMQAV NSLVADGGTN IAEGLKIGAR VIEGRRWKNP
301: VSGMMLLSDG QDNFTFSHAG VRLRTDYESL LPSSCRIPIH TFGFGSDHDA ELMHTISEVS SGTFSFIETE TVIQDAFAQC IGGLLSVVIL EQVVEIECIH
401: EQGLKISSIK AGSYRSRIAP DARTATIDVG DMYAEEERDF LVLLEIPCCD NGSGESESLS LLKVRCVYKD PVTKEIVHVE SGELSIQRPM KLTGKEVVSI
501: EVDRQLNRFL VSQAMSEARV LADGGDLSGA VGILRNRERE LSETPSAQSS DRLCQSLSSE LSALQERMTS RRMYRTSGRA YAFSSMSSHS AQRATARGDS
601: TQGFSPVQAY QTSPMARMVT RSQLLVLESP TKPSPGRGEQ S

Arabidopsis Description

T6D22.13 [Source:UniProtKB/TrEMBL;Acc:Q9LN03]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.