Factsheet for HORVU5Hr1G068120.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU3Hr1G073850.1
HORVU3Hr1G073910.1
HORVU4Hr1G045160.2
HORVU4Hr1G067630.12
HORVU5Hr1G037500.1
HORVU6Hr1G058780.1
HORVU6Hr1G067760.8
HORVU7Hr1G097780.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02720.1	HORVU4Hr1G045160.2	AT1G08650.1	21798944
AT4G02720.1	HORVU5Hr1G037500.1	AT1G08650.1	21798944
AT4G02720.1	HORVU6Hr1G058780.1	AT1G08650.1	21798944
AT4G02720.1	HORVU6Hr1G067760.8	AT1G08650.1	21798944
AT4G02720.1	HORVU4Hr1G067630.12	AT4G17220.1	21798944
AT4G02720.1	HORVU7Hr1G097780.1	AT5G49400.1	21798944
AT4G02720.1	HORVU3Hr1G073850.1	AT5G61010.1	21798944
AT4G02720.1	HORVU3Hr1G073910.1	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os09t0455400-01	Rice	cytosol, mitochondrion, nucleus	14.38	92.0
TraesCS5B01G235300.1	Wheat	plastid	86.88	79.73
TraesCS5A01G237400.1	Wheat	plastid	86.25	78.86
TraesCS5D01G244100.1	Wheat	mitochondrion, nucleus, plastid	86.25	77.38
HORVU5Hr1G068130.1	Barley	nucleus, plastid	89.58	77.06
CDX76672	Canola	nucleus	10.42	72.46
CDY11458	Canola	nucleus	10.42	72.46
CDY42264	Canola	nucleus	10.42	72.46
Zm00001d020706_P001	Maize	mitochondrion, nucleus, plastid	60.42	58.12
CDX91311	Canola	cytosol	12.5	57.69
KXG35759	Sorghum	nucleus	61.88	57.67
CDY10535	Canola	nucleus	38.96	53.12
CDY21909	Canola	nucleus	38.75	52.39
CDY22074	Canola	nucleus	38.33	52.12
Bra007711.1-P	Field mustard	nucleus	32.08	51.16
Bra036246.1-P	Field mustard	nucleus	38.96	50.82
GSMUA_Achr9P15340_001	Banana	nucleus	47.29	47.89
AT4G02720.1	Thale cress	nucleus	40.62	46.21
KRH32028	Soybean	nucleus	46.67	46.0
CDY70496	Canola	nucleus	34.58	45.48
CDY58145	Canola	nucleus	33.96	45.15
KRH71411	Soybean	nucleus	46.67	44.98
Bra032050.1-P	Field mustard	nucleus	34.17	43.04
VIT_07s0151g00910.t01	Wine grape	nucleus	40.62	41.58
CDY53463	Canola	nucleus	32.71	41.42
PGSC0003DMT400097185	Potato	nucleus	41.67	37.24
Solyc11g071660.1.1	Tomato	nucleus	41.25	37.01

Protein Annotations

EnsemblPlants:HORVU5Hr1G068120.2	EnsemblPlantsGene:HORVU5Hr1G068120	GO:GO:0003674	GO:GO:0003682	GO:GO:0005488	GO:GO:0006139
GO:GO:0007154	GO:GO:0007165	GO:GO:0007219	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0045892	InterPro:NKAP	ncoils:Coil	PANTHER:PTHR13087	PANTHER:PTHR13087:SF0
PFAM:PF06047	SEG:seg	UniParc:UPI000B47322F	UniProt:A0A287RMI9	MapMan:17.1.1.1.3	:

Description

No Description!

Coordinates

chrchr5H:-:516365063..516366614

Molecular Weight (calculated)

50386.7 Da

IEP (calculated)

8.722

GRAVY (calculated)

-1.372

Length

480 amino acids

Sequence
(BLAST)

001: WGGRPSPLGS AEVLGGPWTP SXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXHNERG RDMDRVRDVE PPARRGGGGG GEWSASDDDD EDLKGLTYFE
101: YRRVKRQKLR KSLKKCIWKV TPSPPRRDDE ADEYQYSEEE EEKKESPKKD SSDKSDEEKN KDSSESESDA SGSLSDSSES DYSRKKKKGR KGRRSSSKRS
201: RRAHRRHRKS DMESESDSKD EDSEGSYDSE DSRDKKRSKR SWRHKKSKRR GRSSKRKKSK SLDVPSDASS EEVEVVGSSP ISTDSKKTGK SSRKKSSSQS
301: DSEDSIPSDA IIDEKEIEET DEPEIDPEAI KFKEMLEAQK KAALENEMPV GPMPLPRADG HISYGGALRP GEGDAIAQYV QQGKRIPRRG EVGLSADEIQ
401: KFEDLGYVMS GSRHQRMNAI RIRKENQVYS AEDKRALAMF NYEEKSKREH KVMADLQRLV SRTIGQETGP SHDPFATTDD

Best Arabidopsis Sequence Match ( AT4G02720.1 )
(BLAST)

001: MTMNSLPRRF GKNHGYLDRD YRNGRRSGSD SDEELKGLSH EEYRRQKRLK MRKSAKFCFW ENTPSPPRDQ NEDSDENADE IQDKNGGERD DNSKGKERKG
101: KSDSESESDG LRSRKRKSKS SRSKRRRKRS YDSDSESEGS ESDSEEEDRR RRRKSSSKRK KSRSSRSFRK KRSHRRKTKY SDSDESSDED SKAEISASSS
201: GEEEDTKSKS KRRKKSSDSS SKRSKGEKTK SGSDSDGTEE DSKMQVDETV KNTELELDEE ELKKFKEMIE LKKKSSAVDE EEEEGDVGPM PLPKAEGHIS
301: YGGALRPGEG DAIAQYVQQG KRIPRRGEVG LNAEEIQKFE DLGYVMSGSR HQRMNAIRIR KENQVYSAED KRALAMFNYE EKAKREAKVM SDLQRLVQRH
401: MGEEVGPNHD PFGAGKTEED DD

Arabidopsis Description

AT4g02720/T10P11_1 [Source:UniProtKB/TrEMBL;Acc:Q8S9I4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.