Factsheet for GSMUA_Achr9P15340_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
cytosol 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr2P12320_001
GSMUA_Achr3P24290_001
GSMUA_Achr4P21890_001
GSMUA_Achr4P23470_001
GSMUA_Achr4P28690_001
GSMUA_Achr5P03930_001
GSMUA_Achr5P03940_001
GSMUA_Achr7P00520_001
GSMUA_Achr7P26720_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02720.1	GSMUA_Achr2P12320_001	AT1G08650.1	21798944
AT4G02720.1	GSMUA_Achr4P21890_001	AT1G08650.1	21798944
AT4G02720.1	GSMUA_Achr4P28690_001	AT1G08650.1	21798944
AT4G02720.1	GSMUA_Achr5P03930_001	AT1G08650.1	21798944
AT4G02720.1	GSMUA_Achr5P03940_001	AT1G08650.1	21798944
AT4G02720.1	GSMUA_AchrUn_...	AT1G08650.1	21798944
AT4G02720.1	GSMUA_Achr7P26720_001	AT4G17220.1	21798944
AT4G02720.1	GSMUA_Achr11P...	AT5G49400.1	21798944
AT4G02720.1	GSMUA_Achr3P24290_001	AT5G49400.1	21798944
AT4G02720.1	GSMUA_Achr4P23470_001	AT5G61010.1	21798944
AT4G02720.1	GSMUA_Achr7P00520_001	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os09t0455400-01	Rice	cytosol, mitochondrion, nucleus	14.35	90.67
CDX76672	Canola	nucleus	11.18	76.81
CDY11458	Canola	nucleus	11.18	76.81
CDY42264	Canola	nucleus	11.18	76.81
CDX91311	Canola	cytosol	13.71	62.5
CDY22074	Canola	nucleus	40.08	53.82
CDY21909	Canola	nucleus	39.24	52.39
Zm00001d020706_P001	Maize	mitochondrion, nucleus, plastid	54.64	51.9
Bra036246.1-P	Field mustard	nucleus	40.3	51.9
CDY10535	Canola	nucleus	38.19	51.42
KXG35759	Sorghum	nucleus	54.64	50.29
TraesCS5B01G235300.1	Wheat	plastid	54.01	48.95
CDY70496	Canola	nucleus	37.55	48.77
TraesCS5A01G237400.1	Wheat	plastid	54.01	48.76
Bra007711.1-P	Field mustard	nucleus	30.8	48.51
VIT_07s0151g00910.t01	Wine grape	nucleus	47.89	48.4
TraesCS5D01G244100.1	Wheat	mitochondrion, nucleus, plastid	53.59	47.48
KRH32028	Soybean	nucleus	48.73	47.43
HORVU5Hr1G068120.2	Barley	nucleus	47.89	47.29
KRH71411	Soybean	nucleus	49.58	47.19
AT4G02720.1	Thale cress	nucleus	40.72	45.73
HORVU5Hr1G068130.1	Barley	nucleus, plastid	53.8	45.7
Bra032050.1-P	Field mustard	nucleus	35.44	44.09
CDY58145	Canola	nucleus	32.7	42.94
CDY53463	Canola	nucleus	33.97	42.48
PGSC0003DMT400097185	Potato	nucleus	45.15	39.85
Solyc11g071660.1.1	Tomato	nucleus	44.51	39.44

Protein Annotations

MapMan:17.1.1.1.3	ncoils:Coil	GO:GO:0003674	GO:GO:0003682	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005731	GO:GO:0006139
GO:GO:0006259	GO:GO:0007154	GO:GO:0007165	GO:GO:0007219	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0044030	GO:GO:0045892	GO:GO:2000232	EnsemblPlantsGene:GSMUA_Achr9G15340_001
EnsemblPlants:GSMUA_Achr9P15340_001	EnsemblPlants:GSMUA_Achr9T15340_001	UniProt:M0U0J2	InterPro:NKAP	PFAM:PF06047	PANTHER:PTHR13087
PANTHER:PTHR13087:SF0	UniParc:UPI0002959051	SEG:seg	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr9G15340_001]

Coordinates

chr9:+:10053274..10058100

Molecular Weight (calculated)

53932.7 Da

IEP (calculated)

10.149

GRAVY (calculated)

-1.621

Length

474 amino acids

Sequence
(BLAST)

001: MSRTHARLAS AVERPPRSRV SPSPLSDNDR RRSRSRTPPP RSRSPDYRRG GHRWSPYRDG PIRNGKPPGR GDDDDDDDDE ELKGLSYFEY RRLKRQQLRK
101: KLKNCIWRVT PSPPRSEREQ LEPLDESDGA IVASPEEEEE AEGKGRRDRS RNSEADGSDR SPSDSAPDDS ESESRSPPSS RRRRRERRSK RGRSSRKKRY
201: SDSDDGKGSS YEDDSSEEAP ERSSDQSEDE EDRKRRRRKS GTRQTKSKKS ERSNRRKRTK SRATSSDDSE DESDSSPIPR GKALRKSKKR SKKSDTPSDS
301: EADDGPADAK KPEVDPEALK FKEMIESQKK LALDNEPFVG PAPLPRAEGH ISYGGALRPG EGDAIAQYVQ QGKRIPRRGE VGLSAEEIQK FEDLGYVMSG
401: SRHQRMNAIR IRKENQVYSA EDKRALAMFN YEEKAKREHK VMADLQRLVH RHIGQDVGPT HDPFAPKTSD AADD

Best Arabidopsis Sequence Match ( AT4G02720.1 )
(BLAST)

001: MTMNSLPRRF GKNHGYLDRD YRNGRRSGSD SDEELKGLSH EEYRRQKRLK MRKSAKFCFW ENTPSPPRDQ NEDSDENADE IQDKNGGERD DNSKGKERKG
101: KSDSESESDG LRSRKRKSKS SRSKRRRKRS YDSDSESEGS ESDSEEEDRR RRRKSSSKRK KSRSSRSFRK KRSHRRKTKY SDSDESSDED SKAEISASSS
201: GEEEDTKSKS KRRKKSSDSS SKRSKGEKTK SGSDSDGTEE DSKMQVDETV KNTELELDEE ELKKFKEMIE LKKKSSAVDE EEEEGDVGPM PLPKAEGHIS
301: YGGALRPGEG DAIAQYVQQG KRIPRRGEVG LNAEEIQKFE DLGYVMSGSR HQRMNAIRIR KENQVYSAED KRALAMFNYE EKAKREAKVM SDLQRLVQRH
401: MGEEVGPNHD PFGAGKTEED DD

Arabidopsis Description

AT4g02720/T10P11_1 [Source:UniProtKB/TrEMBL;Acc:Q8S9I4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.