Factsheet for VIT_07s0151g00910.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0194g00260.t01
VIT_05s0049g00950.t01
VIT_05s0077g01180.t01
VIT_14s0036g00420.t01
VIT_17s0000g07350.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02720.1	VIT_05s0049g00950.t01	AT1G08650.1	21798944
AT4G02720.1	VIT_14s0036g00420.t01	AT1G08650.1	21798944
AT4G02720.1	VIT_00s0194g00260.t01	AT4G17220.1	21798944
AT4G02720.1	VIT_05s0077g01180.t01	AT5G49400.1	21798944
AT4G02720.1	VIT_17s0000g07350.t01	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os09t0455400-01	Rice	cytosol, mitochondrion, nucleus	14.5	90.67
CDY42264	Canola	nucleus	11.3	76.81
CDX76672	Canola	nucleus	11.09	75.36
CDY11458	Canola	nucleus	11.09	75.36
CDX91311	Canola	cytosol	13.22	59.62
KRH32028	Soybean	nucleus	56.08	54.0
KRH71411	Soybean	nucleus	55.86	52.61
CDY22074	Canola	nucleus	39.23	52.12
CDY10535	Canola	nucleus	38.59	51.42
Bra036246.1-P	Field mustard	nucleus	39.87	50.82
CDY21909	Canola	nucleus	38.38	50.7
GSMUA_Achr9P15340_001	Banana	nucleus	48.4	47.89
Bra007711.1-P	Field mustard	nucleus	30.28	47.18
AT4G02720.1	Thale cress	nucleus	40.94	45.5
Zm00001d020706_P001	Maize	mitochondrion, nucleus, plastid	47.33	44.49
CDY70496	Canola	nucleus	34.33	44.11
PGSC0003DMT400097185	Potato	nucleus	50.11	43.76
Solyc11g071660.1.1	Tomato	nucleus	49.89	43.74
KXG35759	Sorghum	nucleus	47.55	43.3
CDY58145	Canola	nucleus	33.05	42.94
TraesCS5A01G237400.1	Wheat	plastid	46.91	41.9
TraesCS5B01G235300.1	Wheat	plastid	46.27	41.49
TraesCS5D01G244100.1	Wheat	mitochondrion, nucleus, plastid	46.91	41.12
HORVU5Hr1G068120.2	Barley	nucleus	41.58	40.62
Bra032050.1-P	Field mustard	nucleus	32.84	40.42
CDY53463	Canola	nucleus	32.41	40.11
HORVU5Hr1G068130.1	Barley	nucleus, plastid	45.84	38.53

Protein Annotations

MapMan:17.1.1.1.3	ProteinID:CBI28704	ProteinID:CBI28704.3	ncoils:Coil	UniProt:D7TDY1	EMBL:FN595764
GO:GO:0003674	GO:GO:0003682	GO:GO:0005488	GO:GO:0006139	GO:GO:0007154	GO:GO:0007165
GO:GO:0007219	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045892
InterPro:NKAP	PFAM:PF06047	PANTHER:PTHR13087	PANTHER:PTHR13087:SF0	UniParc:UPI0001BE331A	ArrayExpress:VIT_07s0151g00910
EnsemblPlantsGene:VIT_07s0151g00910	EnsemblPlants:VIT_07s0151g00910.t01	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr7:+:1125311..1127262

Molecular Weight (calculated)

53685.3 Da

IEP (calculated)

7.816

GRAVY (calculated)

-1.519

Length

469 amino acids

Sequence
(BLAST)

001: MGRPSSTVEI PDKRHRIENG GHSPDSDSPR DHRRRRSPDY GRYDPDSERR HRRRSDSPDY PNPRRSPRSD ARRVGSGDRK NRSATFLDRD YKNGRYSESE
101: SDEELKGLSF EEYRRLKRQK LRRMLRNCIW NVTPSPPRNA NEEEFEPEPE EFTEKYVVEE DKRENNDLKK EIKGSAKSEL ERSERSESES ESESDSESED
201: SRSRRKRKGS RSRRRTGKSS YSDSESDGDD SEKDDASENE SDSEVSGSDE SDRPRSQKQG QALSTKSKRS KKKSRSETYS ESSYSDKSSD SEVDAKSKMK
301: AEDVMINEVN AEALIFKEMI ESQKKPALDN EPTVGPMPLP RAEGHISYGG ALRPGEGDAI AQYVQQGKRI PRRGEVGLSA EEIQKFEGLG YVMSGSRHQR
401: MNAIRIRKEN QVYSAEDKRA LAMFNYEEKA KREHKVMADL QRLVQRHIGQ DVGPTHDPFA VKGAEGTDT

Best Arabidopsis Sequence Match ( AT4G02720.1 )
(BLAST)

001: MTMNSLPRRF GKNHGYLDRD YRNGRRSGSD SDEELKGLSH EEYRRQKRLK MRKSAKFCFW ENTPSPPRDQ NEDSDENADE IQDKNGGERD DNSKGKERKG
101: KSDSESESDG LRSRKRKSKS SRSKRRRKRS YDSDSESEGS ESDSEEEDRR RRRKSSSKRK KSRSSRSFRK KRSHRRKTKY SDSDESSDED SKAEISASSS
201: GEEEDTKSKS KRRKKSSDSS SKRSKGEKTK SGSDSDGTEE DSKMQVDETV KNTELELDEE ELKKFKEMIE LKKKSSAVDE EEEEGDVGPM PLPKAEGHIS
301: YGGALRPGEG DAIAQYVQQG KRIPRRGEVG LNAEEIQKFE DLGYVMSGSR HQRMNAIRIR KENQVYSAED KRALAMFNYE EKAKREAKVM SDLQRLVQRH
401: MGEEVGPNHD PFGAGKTEED DD

Arabidopsis Description

AT4g02720/T10P11_1 [Source:UniProtKB/TrEMBL;Acc:Q8S9I4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.