Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY39728 | Canola | nucleus | 75.12 | 78.52 |
| CDY44461 | Canola | nucleus | 75.6 | 78.11 |
| Bra025484.1-P | Field mustard | nucleus | 74.48 | 77.98 |
| AT1G64180.1 | Thale cress | nucleus | 58.75 | 61.72 |
| KRH77618 | Soybean | nucleus | 50.24 | 47.0 |
| KRH27868 | Soybean | nucleus | 48.48 | 45.14 |
| VIT_02s0025g00840.t01 | Wine grape | nucleus | 48.96 | 44.79 |
| PGSC0003DMT400032084 | Potato | nucleus | 44.94 | 41.3 |
| Solyc08g081830.2.1 | Tomato | nucleus, plastid | 44.62 | 41.0 |
| AT2G46250.1 | Thale cress | nucleus | 24.4 | 32.48 |
| GSMUA_Achr10P... | Banana | nucleus | 34.83 | 32.2 |
| GSMUA_Achr10P... | Banana | nucleus | 33.07 | 31.26 |
| Os02t0260500-00 | Rice | nucleus | 24.88 | 31.19 |
| Zm00001d053356_P002 | Maize | nucleus | 27.29 | 26.81 |
| OQU76466 | Sorghum | nucleus | 30.34 | 26.51 |
| KXG29970 | Sorghum | nucleus | 29.7 | 26.43 |
| Zm00001d037050_P001 | Maize | nucleus | 26.97 | 25.38 |
| TraesCS7A01G344200.1 | Wheat | nucleus | 29.37 | 24.4 |
| TraesCS7D01G335400.1 | Wheat | nucleus | 29.05 | 24.33 |
| TraesCS7B01G238900.1 | Wheat | nucleus | 28.57 | 23.73 |
| HORVU7Hr1G080670.9 | Barley | nucleus, plastid | 28.89 | 21.4 |
| Os06t0507900-01 | Rice | cytosol, nucleus | 10.75 | 20.36 |
| AT3G11590.1 | Thale cress | plastid | 19.9 | 19.94 |
| AT5G22310.1 | Thale cress | nucleus | 14.93 | 19.33 |
| AT1G50660.1 | Thale cress | nucleus | 17.5 | 15.03 |
| AT3G20350.1 | Thale cress | plastid | 15.57 | 14.41 |
Protein Annotations
| MapMan:35.1 | EntrezGene:834164 | ProteinID:AED94700.1 | EMBL:AK229571 | ArrayExpress:AT5G41620 | EnsemblPlantsGene:AT5G41620 |
| RefSeq:AT5G41620 | TAIR:AT5G41620 | RefSeq:AT5G41620-TAIR-G | EnsemblPlants:AT5G41620.1 | TAIR:AT5G41620.1 | ProteinID:BAB11468.1 |
| EMBL:BT015350 | EMBL:BT015892 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005886 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0016020 | RefSeq:NP_198977.3 |
| PO:PO:0000037 | PO:PO:0000293 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009031 |
| PO:PO:0009046 | PO:PO:0009052 | PO:PO:0020100 | PO:PO:0025022 | PANTHER:PTHR31071 | PANTHER:PTHR31071:SF9 |
| UniProt:Q66GQ2 | UniParc:UPI00000A86FB | SEG:seg | : | : | : |
Description
Uncharacterized protein At5g41620 [Source:UniProtKB/Swiss-Prot;Acc:Q66GQ2]
Coordinates
chr5:+:16646157..16649026
Molecular Weight (calculated)
70834.2 Da
IEP (calculated)
9.186
GRAVY (calculated)
-0.969
Length
623 amino acids
Sequence
(BLAST)
(BLAST)
001: MESKVRGEEE RQKVERLVEK LKVHNNNNNR SSTPAHISFV PNSIVVSSRK LAAAFWEFHQ YHYKDEEDCS YSYLSSASAK MHRGPNGFAG ASSRRQRHGK
101: AVAVKENGLD LSQFLRDPSP DHQPDSAGSL RRQIGQMLIK HHQSIDRNNH ALQPVSPASY GSSLEVTTYN KAVTPSSSLE FRGRPSREPH YNLKTSTELL
201: KVLNRIWSLE EQHVSNISLI KALKTEVAHS RVRIKELLRY QQADRHELDS VVKQLAEEKL LSKNKEVERM SSAVQSVRKA LEDERKLRKR SESLHRKMAR
301: ELSEVKSSLS NCVKELERGS KSNKMMELLC DEFAKGIKSY EEEIHGLKKK NLDKDWAGRG GGDQLVLHIA ESWLDERMQM RLEGGDTLNG KNRSVLDKLE
401: VEIETFLQEK RNEIPRNRRN SLESVPFNTL SAPPRDVDCE EDSGGSDSNC FELKKPAESY GDETKKPNQH NKDGSIDEKP KSPSSFQVNF EDQMAWALSS
501: NGKKKTTRAI EDEEEEEDVK PENSNNNKKP ENECATTNKN DVMGEMIRTH RRLLSETREI DEASCNFPSS RRQASPVRQW ISRTVAPDLL GPSEIAIAHG
601: VKDNTLKTKL ANSSKSRLRL FKG
101: AVAVKENGLD LSQFLRDPSP DHQPDSAGSL RRQIGQMLIK HHQSIDRNNH ALQPVSPASY GSSLEVTTYN KAVTPSSSLE FRGRPSREPH YNLKTSTELL
201: KVLNRIWSLE EQHVSNISLI KALKTEVAHS RVRIKELLRY QQADRHELDS VVKQLAEEKL LSKNKEVERM SSAVQSVRKA LEDERKLRKR SESLHRKMAR
301: ELSEVKSSLS NCVKELERGS KSNKMMELLC DEFAKGIKSY EEEIHGLKKK NLDKDWAGRG GGDQLVLHIA ESWLDERMQM RLEGGDTLNG KNRSVLDKLE
401: VEIETFLQEK RNEIPRNRRN SLESVPFNTL SAPPRDVDCE EDSGGSDSNC FELKKPAESY GDETKKPNQH NKDGSIDEKP KSPSSFQVNF EDQMAWALSS
501: NGKKKTTRAI EDEEEEEDVK PENSNNNKKP ENECATTNKN DVMGEMIRTH RRLLSETREI DEASCNFPSS RRQASPVRQW ISRTVAPDLL GPSEIAIAHG
601: VKDNTLKTKL ANSSKSRLRL FKG
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.